Wall clock time and date at job start Wed Apr 1 2020 04:19:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.38256 * 119.99730 * 2 1 4 4 C 1.38214 * 120.00164 * 179.97438 * 3 2 1 5 5 C 1.38261 * 119.99661 * 0.02562 * 4 3 2 6 6 C 1.38212 * 120.00042 * 359.97438 * 5 4 3 7 7 C 1.38211 * 120.00152 * 179.72671 * 2 1 3 8 8 C 1.50698 * 119.99834 * 359.97438 * 7 2 1 9 9 C 1.50698 * 109.47251 * 85.00549 * 8 7 2 10 10 O 1.21279 * 119.99783 * 359.97438 * 9 8 7 11 11 N 1.34780 * 120.00308 * 180.02562 * 9 8 7 12 12 C 1.46490 * 120.00068 * 179.97438 * 11 9 8 13 13 H 1.09000 * 109.47346 * 34.99949 * 12 11 9 14 14 C 1.53000 * 109.47284 * 274.99961 * 12 11 9 15 15 C 1.52999 * 109.47128 * 154.99901 * 12 11 9 16 16 C 1.53005 * 109.47011 * 295.00025 * 15 12 11 17 17 N 1.46903 * 109.47103 * 180.02562 * 16 15 12 18 18 C 1.46897 * 110.99847 * 180.02562 * 17 16 15 19 19 C 1.50698 * 109.47043 * 179.97438 * 18 17 16 20 20 O 1.21296 * 120.00215 * 359.97438 * 19 18 17 21 21 N 1.34775 * 120.00065 * 179.97438 * 19 18 17 22 22 C 1.37103 * 119.99902 * 179.97438 * 21 19 18 23 23 H 1.08003 * 120.00292 * 0.02562 * 22 21 19 24 24 C 1.38947 * 119.99716 * 180.02562 * 22 21 19 25 25 N 1.31410 * 120.00208 * 359.97438 * 24 22 21 26 26 Si 1.86802 * 119.99749 * 180.02562 * 24 22 21 27 27 H 1.48501 * 109.47436 * 90.00103 * 26 24 22 28 28 H 1.48504 * 109.47127 * 209.99798 * 26 24 22 29 29 H 1.48502 * 109.47235 * 329.99460 * 26 24 22 30 30 H 1.08999 * 109.47015 * 90.00126 * 1 2 3 31 31 H 1.09000 * 109.46646 * 209.99278 * 1 2 3 32 32 H 1.09000 * 109.47248 * 329.99996 * 1 2 3 33 33 H 1.07999 * 120.00073 * 0.02562 * 3 2 1 34 34 H 1.07991 * 120.00008 * 180.02562 * 4 3 2 35 35 H 1.08002 * 119.99635 * 179.97438 * 5 4 3 36 36 H 1.08000 * 119.99941 * 179.97438 * 6 5 4 37 37 H 1.09004 * 109.46683 * 204.99819 * 8 7 2 38 38 H 1.09000 * 109.47263 * 324.99722 * 8 7 2 39 39 H 0.96999 * 119.99704 * 359.97438 * 11 9 8 40 40 H 1.08997 * 109.47365 * 180.02562 * 14 12 11 41 41 H 1.09010 * 109.46943 * 299.99701 * 14 12 11 42 42 H 1.08997 * 109.47739 * 60.00061 * 14 12 11 43 43 H 1.08998 * 109.47467 * 54.99839 * 15 12 11 44 44 H 1.09001 * 109.47222 * 175.00073 * 15 12 11 45 45 H 1.09002 * 109.46945 * 299.99438 * 16 15 12 46 46 H 1.08992 * 109.47163 * 59.99758 * 16 15 12 47 47 H 1.00903 * 110.99420 * 303.95412 * 17 16 15 48 48 H 1.08998 * 109.47005 * 299.99539 * 18 17 16 49 49 H 1.08998 * 109.47434 * 59.99952 * 18 17 16 50 50 H 0.96998 * 120.00099 * 0.02562 * 21 19 18 51 51 H 0.97001 * 119.99869 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1983 1.1974 0.0000 4 6 3.5804 1.1975 0.0005 5 6 4.2718 0.0001 0.0005 6 6 3.5807 -1.1969 0.0005 7 6 2.1981 -1.1969 0.0057 8 6 1.4447 -2.5020 0.0125 9 6 1.0858 -2.8822 -1.4008 10 8 1.4096 -2.1639 -2.3228 11 7 0.4041 -4.0200 -1.6402 12 6 0.0548 -4.3894 -3.0141 13 1 0.8523 -4.0769 -3.6883 14 6 -1.2501 -3.6969 -3.4123 15 6 -0.1245 -5.9061 -3.1046 16 6 1.2133 -6.5952 -2.8279 17 7 1.0413 -8.0515 -2.9153 18 6 2.3081 -8.7478 -2.6541 19 6 2.0927 -10.2361 -2.7518 20 8 0.9920 -10.6738 -3.0128 21 7 3.1231 -11.0809 -2.5491 22 6 2.9269 -12.4349 -2.6374 23 1 1.9468 -12.8246 -2.8698 24 6 3.9891 -13.3059 -2.4279 25 7 5.1817 -12.8318 -2.1456 26 14 3.7220 -15.1507 -2.5490 27 1 3.9576 -15.5944 -3.9464 28 1 4.6684 -15.8485 -1.6419 29 1 2.3277 -15.4760 -2.1547 30 1 -0.3633 0.0000 -1.0277 31 1 -0.3632 -0.8901 0.5137 32 1 -0.3634 0.8900 0.5138 33 1 1.6583 2.1327 0.0004 34 1 4.1203 2.1327 0.0010 35 1 5.3518 0.0002 0.0005 36 1 4.1208 -2.1321 0.0001 37 1 2.0698 -3.2801 0.4505 38 1 0.5342 -2.3928 0.6018 39 1 0.1448 -4.5943 -0.9028 40 1 -1.5102 -3.9721 -4.4344 41 1 -2.0477 -4.0094 -2.7382 42 1 -1.1225 -2.6164 -3.3479 43 1 -0.8592 -6.2298 -2.3674 44 1 -0.4704 -6.1722 -4.1034 45 1 1.9480 -6.2716 -3.5652 46 1 1.5593 -6.3292 -1.8291 47 1 0.3184 -8.3685 -2.2868 48 1 3.0509 -8.4388 -3.3896 49 1 2.6611 -8.4970 -1.6538 50 1 4.0032 -10.7310 -2.3400 51 1 5.9233 -13.4398 -1.9997 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001568706829.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:19:41 Heat of formation + Delta-G solvation = -64.751038 kcal Electronic energy + Delta-G solvation = -29179.272476 eV Core-core repulsion = 25077.617880 eV Total energy + Delta-G solvation = -4101.654596 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -40.54175 -39.26749 -38.31748 -36.92122 -34.98927 -33.83422 -33.67898 -32.59270 -31.68734 -31.21278 -29.32350 -28.20157 -26.89581 -26.22784 -24.15463 -22.81723 -22.24735 -21.73071 -20.92640 -20.43900 -19.23765 -17.90118 -17.38617 -16.88100 -16.41727 -16.27171 -16.06076 -15.52922 -15.17294 -14.89414 -14.70796 -14.47422 -14.26782 -13.98286 -13.79914 -13.69311 -13.58841 -13.39245 -13.23267 -13.09231 -12.91719 -12.66129 -12.32912 -12.25872 -12.20916 -12.11899 -11.69521 -11.52679 -11.33518 -11.25455 -11.20350 -11.13834 -11.05442 -10.95695 -10.40206 -10.22700 -10.08720 -9.51895 -9.31962 -9.03928 -8.83424 -8.47410 -8.07518 -7.96907 -6.42615 -3.83568 1.06975 1.15658 2.43204 2.93125 3.17318 3.25935 3.31616 3.55621 3.89634 4.03336 4.24864 4.29039 4.48863 4.62275 4.67249 4.68713 4.78160 4.84966 4.87518 4.97443 5.01532 5.07840 5.17187 5.22817 5.26777 5.30644 5.35051 5.36675 5.41442 5.49571 5.50635 5.53166 5.72944 5.76075 5.79333 5.87699 5.90413 5.94328 5.99506 6.06422 6.20684 6.25950 6.26351 6.32223 6.36262 6.75777 7.19245 7.26076 7.54297 7.64418 8.01819 8.05384 8.60251 9.16878 9.53322 10.04700 10.75109 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.015541 B = 0.001646 C = 0.001521 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1801.267013 B =17003.039946 C =18408.342971 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.069 4.069 3 C -0.122 4.122 4 C -0.117 4.117 5 C -0.125 4.125 6 C -0.102 4.102 7 C -0.066 4.066 8 C -0.108 4.108 9 C 0.516 3.484 10 O -0.529 6.529 11 N -0.727 5.727 12 C 0.143 3.857 13 H 0.089 0.911 14 C -0.161 4.161 15 C -0.125 4.125 16 C 0.060 3.940 17 N -0.669 5.669 18 C 0.051 3.949 19 C 0.440 3.560 20 O -0.584 6.584 21 N -0.564 5.564 22 C -0.300 4.300 23 H 0.103 0.897 24 C 0.022 3.978 25 N -0.902 5.902 26 Si 0.931 3.069 27 H -0.278 1.278 28 H -0.284 1.284 29 H -0.270 1.270 30 H 0.072 0.928 31 H 0.065 0.935 32 H 0.065 0.935 33 H 0.120 0.880 34 H 0.120 0.880 35 H 0.121 0.879 36 H 0.121 0.879 37 H 0.102 0.898 38 H 0.104 0.896 39 H 0.399 0.601 40 H 0.067 0.933 41 H 0.056 0.944 42 H 0.058 0.942 43 H 0.068 0.932 44 H 0.090 0.910 45 H 0.070 0.930 46 H 0.025 0.975 47 H 0.348 0.652 48 H 0.085 0.915 49 H 0.042 0.958 50 H 0.392 0.608 51 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.718 27.905 7.216 29.595 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.069 4.069 3 C -0.140 4.140 4 C -0.135 4.135 5 C -0.143 4.143 6 C -0.120 4.120 7 C -0.067 4.067 8 C -0.148 4.148 9 C 0.302 3.698 10 O -0.405 6.405 11 N -0.379 5.379 12 C 0.038 3.962 13 H 0.107 0.893 14 C -0.219 4.219 15 C -0.163 4.163 16 C -0.070 4.070 17 N -0.302 5.302 18 C -0.082 4.082 19 C 0.226 3.774 20 O -0.468 6.468 21 N -0.200 5.200 22 C -0.430 4.430 23 H 0.121 0.879 24 C -0.180 4.180 25 N -0.543 5.543 26 Si 0.758 3.242 27 H -0.204 1.204 28 H -0.209 1.209 29 H -0.194 1.194 30 H 0.091 0.909 31 H 0.084 0.916 32 H 0.084 0.916 33 H 0.138 0.862 34 H 0.138 0.862 35 H 0.139 0.861 36 H 0.139 0.861 37 H 0.120 0.880 38 H 0.122 0.878 39 H 0.233 0.767 40 H 0.086 0.914 41 H 0.075 0.925 42 H 0.077 0.923 43 H 0.087 0.913 44 H 0.109 0.891 45 H 0.089 0.911 46 H 0.043 0.957 47 H 0.167 0.833 48 H 0.103 0.897 49 H 0.060 0.940 50 H 0.225 0.775 51 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -6.969 27.990 5.711 29.405 hybrid contribution 0.647 -0.918 1.373 1.774 sum -6.322 27.072 7.084 28.689 Atomic orbital electron populations 1.20859 0.91484 1.02489 1.02595 1.19676 0.95847 0.92618 0.98800 1.20970 0.94310 0.97283 1.01449 1.21118 0.94302 0.98034 1.00057 1.21088 0.99860 0.92459 1.00933 1.20999 0.93390 0.98337 0.99316 1.19087 0.93427 0.93038 1.01138 1.20737 1.02191 0.96629 0.95200 1.20476 0.77426 0.80861 0.91047 1.90730 1.53052 1.50906 1.45798 1.46170 1.58031 1.24212 1.09507 1.20973 0.97794 0.94162 0.83223 0.89270 1.22149 0.96886 1.01060 1.01852 1.21881 0.97873 0.92326 1.04216 1.21960 0.97180 0.88284 0.99538 1.60068 1.07716 1.02723 1.59645 1.21662 0.92508 0.94143 0.99848 1.19815 0.85828 0.87219 0.84558 1.90520 1.24682 1.78109 1.53482 1.41870 1.10190 1.06385 1.61586 1.19711 0.97436 0.80785 1.45023 0.87904 1.25269 0.94746 1.00765 0.97184 1.69613 1.00433 1.36139 1.48122 0.85849 0.78292 0.81950 0.78137 1.20371 1.20941 1.19427 0.90893 0.91586 0.91577 0.86211 0.86207 0.86092 0.86132 0.87958 0.87773 0.76654 0.91413 0.92473 0.92259 0.91339 0.89144 0.91135 0.95651 0.83301 0.89656 0.94000 0.77462 0.91864 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.83 9.61 36.01 0.35 -0.48 16 2 C -0.07 -0.63 5.88 -104.62 -0.62 -1.24 16 3 C -0.12 -1.05 9.70 -39.58 -0.38 -1.43 16 4 C -0.12 -0.98 10.05 -39.58 -0.40 -1.38 16 5 C -0.13 -1.10 10.05 -39.58 -0.40 -1.49 16 6 C -0.10 -0.96 9.68 -39.58 -0.38 -1.34 16 7 C -0.07 -0.62 4.37 -104.62 -0.46 -1.07 16 8 C -0.11 -0.78 5.33 -29.04 -0.15 -0.93 16 9 C 0.52 4.97 7.79 -10.98 -0.09 4.89 16 10 O -0.53 -7.28 15.70 5.56 0.09 -7.20 16 11 N -0.73 -5.68 4.53 -53.81 -0.24 -5.92 16 12 C 0.14 1.27 2.57 -67.94 -0.17 1.10 16 13 H 0.09 0.98 7.58 -51.93 -0.39 0.58 16 14 C -0.16 -1.31 9.48 37.16 0.35 -0.96 16 15 C -0.12 -1.16 5.01 -26.73 -0.13 -1.29 16 16 C 0.06 0.70 5.57 -3.82 -0.02 0.67 16 17 N -0.67 -10.47 6.13 -115.06 -0.71 -11.18 16 18 C 0.05 0.90 6.17 -4.98 -0.03 0.87 16 19 C 0.44 10.40 7.82 -10.99 -0.09 10.31 16 20 O -0.58 -15.83 15.78 5.54 0.09 -15.74 16 21 N -0.56 -14.32 5.29 -10.96 -0.06 -14.38 16 22 C -0.30 -8.38 9.68 -14.93 -0.14 -8.53 16 23 H 0.10 3.01 7.16 -52.48 -0.38 2.63 16 24 C 0.02 0.59 5.50 -17.47 -0.10 0.49 16 25 N -0.90 -24.54 13.05 55.50 0.72 -23.81 16 26 Si 0.93 21.02 29.55 -169.99 -5.02 16.00 16 27 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 28 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 29 H -0.27 -6.07 7.11 56.52 0.40 -5.67 16 30 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 31 H 0.07 0.38 6.02 -51.93 -0.31 0.07 16 32 H 0.07 0.37 8.09 -51.93 -0.42 -0.05 16 33 H 0.12 0.79 8.06 -52.49 -0.42 0.37 16 34 H 0.12 0.74 8.06 -52.49 -0.42 0.31 16 35 H 0.12 0.83 8.06 -52.49 -0.42 0.40 16 36 H 0.12 0.98 8.06 -52.49 -0.42 0.55 16 37 H 0.10 0.57 8.05 -51.93 -0.42 0.16 16 38 H 0.10 0.53 6.16 -51.93 -0.32 0.21 16 39 H 0.40 2.24 8.60 -40.82 -0.35 1.89 16 40 H 0.07 0.52 8.14 -51.93 -0.42 0.09 16 41 H 0.06 0.41 8.14 -51.92 -0.42 -0.01 16 42 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 43 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 44 H 0.09 0.91 8.14 -51.93 -0.42 0.48 16 45 H 0.07 0.87 8.14 -51.93 -0.42 0.44 16 46 H 0.03 0.27 7.75 -51.93 -0.40 -0.13 16 47 H 0.35 5.50 8.43 -39.29 -0.33 5.17 16 48 H 0.09 1.42 8.14 -51.93 -0.42 0.99 16 49 H 0.04 0.66 8.14 -51.93 -0.42 0.24 16 50 H 0.39 9.52 7.90 -40.82 -0.32 9.20 16 51 H 0.27 6.98 8.31 -40.82 -0.34 6.64 16 LS Contribution 425.16 15.07 6.41 6.41 Total: -1.00 -34.43 425.16 -9.87 -44.29 By element: Atomic # 1 Polarization: 21.63 SS G_CDS: -8.28 Total: 13.35 kcal Atomic # 6 Polarization: 1.04 SS G_CDS: -2.86 Total: -1.82 kcal Atomic # 7 Polarization: -55.01 SS G_CDS: -0.28 Total: -55.29 kcal Atomic # 8 Polarization: -23.11 SS G_CDS: 0.17 Total: -22.94 kcal Atomic # 14 Polarization: 21.02 SS G_CDS: -5.02 Total: 16.00 kcal Total LS contribution 6.41 Total: 6.41 kcal Total: -34.43 -9.87 -44.29 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001568706829.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.458 kcal (2) G-P(sol) polarization free energy of solvation -34.427 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.884 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.867 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.293 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.751 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds