Wall clock time and date at job start Wed Apr 1 2020 04:19:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.38256 * 119.99730 * 2 1 4 4 C 1.38214 * 120.00164 * 179.97438 * 3 2 1 5 5 C 1.38261 * 119.99661 * 0.02562 * 4 3 2 6 6 C 1.38212 * 120.00042 * 359.97438 * 5 4 3 7 7 C 1.38211 * 120.00152 * 179.72671 * 2 1 3 8 8 C 1.50698 * 119.99834 * 359.97438 * 7 2 1 9 9 C 1.50698 * 109.47251 * 85.00549 * 8 7 2 10 10 O 1.21279 * 119.99783 * 359.97438 * 9 8 7 11 11 N 1.34780 * 120.00308 * 180.02562 * 9 8 7 12 12 C 1.46490 * 120.00068 * 179.97438 * 11 9 8 13 13 H 1.09000 * 109.47346 * 34.99949 * 12 11 9 14 14 C 1.53000 * 109.47284 * 274.99961 * 12 11 9 15 15 C 1.52999 * 109.47128 * 154.99901 * 12 11 9 16 16 C 1.53005 * 109.47011 * 295.00025 * 15 12 11 17 17 N 1.46903 * 109.47103 * 180.02562 * 16 15 12 18 18 C 1.46897 * 110.99847 * 180.02562 * 17 16 15 19 19 C 1.50698 * 109.47043 * 179.97438 * 18 17 16 20 20 O 1.21296 * 120.00215 * 359.97438 * 19 18 17 21 21 N 1.34775 * 120.00065 * 179.97438 * 19 18 17 22 22 C 1.37103 * 119.99902 * 179.97438 * 21 19 18 23 23 H 1.08003 * 120.00292 * 0.02562 * 22 21 19 24 24 C 1.38947 * 119.99716 * 180.02562 * 22 21 19 25 25 N 1.31410 * 120.00208 * 359.97438 * 24 22 21 26 26 Si 1.86802 * 119.99749 * 180.02562 * 24 22 21 27 27 H 1.48501 * 109.47436 * 90.00103 * 26 24 22 28 28 H 1.48504 * 109.47127 * 209.99798 * 26 24 22 29 29 H 1.48502 * 109.47235 * 329.99460 * 26 24 22 30 30 H 1.08999 * 109.47015 * 90.00126 * 1 2 3 31 31 H 1.09000 * 109.46646 * 209.99278 * 1 2 3 32 32 H 1.09000 * 109.47248 * 329.99996 * 1 2 3 33 33 H 1.07999 * 120.00073 * 0.02562 * 3 2 1 34 34 H 1.07991 * 120.00008 * 180.02562 * 4 3 2 35 35 H 1.08002 * 119.99635 * 179.97438 * 5 4 3 36 36 H 1.08000 * 119.99941 * 179.97438 * 6 5 4 37 37 H 1.09004 * 109.46683 * 204.99819 * 8 7 2 38 38 H 1.09000 * 109.47263 * 324.99722 * 8 7 2 39 39 H 0.96999 * 119.99704 * 359.97438 * 11 9 8 40 40 H 1.08997 * 109.47365 * 180.02562 * 14 12 11 41 41 H 1.09010 * 109.46943 * 299.99701 * 14 12 11 42 42 H 1.08997 * 109.47739 * 60.00061 * 14 12 11 43 43 H 1.08998 * 109.47467 * 54.99839 * 15 12 11 44 44 H 1.09001 * 109.47222 * 175.00073 * 15 12 11 45 45 H 1.09002 * 109.46945 * 299.99438 * 16 15 12 46 46 H 1.08992 * 109.47163 * 59.99758 * 16 15 12 47 47 H 1.00903 * 110.99420 * 303.95412 * 17 16 15 48 48 H 1.08998 * 109.47005 * 299.99539 * 18 17 16 49 49 H 1.08998 * 109.47434 * 59.99952 * 18 17 16 50 50 H 0.96998 * 120.00099 * 0.02562 * 21 19 18 51 51 H 0.97001 * 119.99869 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1983 1.1974 0.0000 4 6 3.5804 1.1975 0.0005 5 6 4.2718 0.0001 0.0005 6 6 3.5807 -1.1969 0.0005 7 6 2.1981 -1.1969 0.0057 8 6 1.4447 -2.5020 0.0125 9 6 1.0858 -2.8822 -1.4008 10 8 1.4096 -2.1639 -2.3228 11 7 0.4041 -4.0200 -1.6402 12 6 0.0548 -4.3894 -3.0141 13 1 0.8523 -4.0769 -3.6883 14 6 -1.2501 -3.6969 -3.4123 15 6 -0.1245 -5.9061 -3.1046 16 6 1.2133 -6.5952 -2.8279 17 7 1.0413 -8.0515 -2.9153 18 6 2.3081 -8.7478 -2.6541 19 6 2.0927 -10.2361 -2.7518 20 8 0.9920 -10.6738 -3.0128 21 7 3.1231 -11.0809 -2.5491 22 6 2.9269 -12.4349 -2.6374 23 1 1.9468 -12.8246 -2.8698 24 6 3.9891 -13.3059 -2.4279 25 7 5.1817 -12.8318 -2.1456 26 14 3.7220 -15.1507 -2.5490 27 1 3.9576 -15.5944 -3.9464 28 1 4.6684 -15.8485 -1.6419 29 1 2.3277 -15.4760 -2.1547 30 1 -0.3633 0.0000 -1.0277 31 1 -0.3632 -0.8901 0.5137 32 1 -0.3634 0.8900 0.5138 33 1 1.6583 2.1327 0.0004 34 1 4.1203 2.1327 0.0010 35 1 5.3518 0.0002 0.0005 36 1 4.1208 -2.1321 0.0001 37 1 2.0698 -3.2801 0.4505 38 1 0.5342 -2.3928 0.6018 39 1 0.1448 -4.5943 -0.9028 40 1 -1.5102 -3.9721 -4.4344 41 1 -2.0477 -4.0094 -2.7382 42 1 -1.1225 -2.6164 -3.3479 43 1 -0.8592 -6.2298 -2.3674 44 1 -0.4704 -6.1722 -4.1034 45 1 1.9480 -6.2716 -3.5652 46 1 1.5593 -6.3292 -1.8291 47 1 0.3184 -8.3685 -2.2868 48 1 3.0509 -8.4388 -3.3896 49 1 2.6611 -8.4970 -1.6538 50 1 4.0032 -10.7310 -2.3400 51 1 5.9233 -13.4398 -1.9997 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001568706829.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:19:40 Heat of formation + Delta-G solvation = -88.349854 kcal Electronic energy + Delta-G solvation = -29180.295797 eV Core-core repulsion = 25077.617880 eV Total energy + Delta-G solvation = -4102.677917 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 2.01 seconds Orbital eigenvalues (eV) -41.23895 -40.18468 -39.89284 -37.89873 -36.26778 -35.67585 -34.30702 -33.30579 -33.20728 -32.43121 -30.35653 -28.80142 -27.79008 -27.46064 -25.78913 -23.65172 -23.05572 -22.46661 -21.68351 -21.14044 -21.00848 -19.90804 -18.10713 -17.84471 -17.56568 -17.14956 -16.96731 -16.67880 -16.47271 -15.98165 -15.81250 -15.66954 -15.30128 -15.22197 -15.05709 -14.83940 -14.37094 -14.22834 -13.98614 -13.83682 -13.79609 -13.63399 -13.48691 -13.31566 -13.20779 -12.94520 -12.87616 -12.79190 -12.69601 -12.42471 -12.24370 -12.12924 -12.03582 -11.84628 -11.77189 -11.75965 -11.50898 -10.88876 -10.36568 -10.04912 -10.02114 -9.67892 -9.46051 -9.31542 -8.46989 -5.95991 0.43742 0.51514 1.38341 1.42270 1.54997 1.71256 2.04507 2.26737 2.29097 2.89205 2.92232 3.20282 3.49823 3.69494 3.88790 3.92406 4.01258 4.08147 4.13016 4.16212 4.23838 4.31288 4.32014 4.44381 4.47336 4.47636 4.53881 4.57129 4.62978 4.69147 4.74874 4.82423 4.83127 4.85209 4.94575 4.97144 5.11636 5.18913 5.20914 5.31894 5.32916 5.40740 5.58561 5.60990 5.63770 5.74047 5.88534 6.09812 6.15961 6.44184 6.59417 6.62938 7.12025 7.34040 7.55588 8.10574 8.70364 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.015541 B = 0.001646 C = 0.001521 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1801.267013 B =17003.039946 C =18408.342971 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.086 4.086 3 C -0.135 4.135 4 C -0.127 4.127 5 C -0.139 4.139 6 C -0.122 4.122 7 C -0.082 4.082 8 C -0.103 4.103 9 C 0.516 3.484 10 O -0.576 6.576 11 N -0.715 5.715 12 C 0.150 3.850 13 H 0.066 0.934 14 C -0.155 4.155 15 C -0.113 4.113 16 C 0.063 3.937 17 N -0.683 5.683 18 C 0.065 3.935 19 C 0.437 3.563 20 O -0.622 6.622 21 N -0.573 5.573 22 C -0.335 4.335 23 H 0.080 0.920 24 C -0.013 4.013 25 N -0.921 5.921 26 Si 0.994 3.006 27 H -0.272 1.272 28 H -0.270 1.270 29 H -0.272 1.272 30 H 0.059 0.941 31 H 0.079 0.921 32 H 0.079 0.921 33 H 0.135 0.865 34 H 0.138 0.862 35 H 0.135 0.865 36 H 0.127 0.873 37 H 0.121 0.879 38 H 0.128 0.872 39 H 0.413 0.587 40 H 0.071 0.929 41 H 0.071 0.929 42 H 0.044 0.956 43 H 0.084 0.916 44 H 0.083 0.917 45 H 0.063 0.937 46 H 0.042 0.958 47 H 0.347 0.653 48 H 0.098 0.902 49 H 0.067 0.933 50 H 0.396 0.604 51 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.055 28.152 8.348 30.199 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.086 4.086 3 C -0.153 4.153 4 C -0.145 4.145 5 C -0.157 4.157 6 C -0.140 4.140 7 C -0.082 4.082 8 C -0.142 4.142 9 C 0.304 3.696 10 O -0.455 6.455 11 N -0.368 5.368 12 C 0.044 3.956 13 H 0.084 0.916 14 C -0.214 4.214 15 C -0.151 4.151 16 C -0.065 4.065 17 N -0.316 5.316 18 C -0.067 4.067 19 C 0.225 3.775 20 O -0.509 6.509 21 N -0.211 5.211 22 C -0.465 4.465 23 H 0.098 0.902 24 C -0.213 4.213 25 N -0.561 5.561 26 Si 0.817 3.183 27 H -0.198 1.198 28 H -0.195 1.195 29 H -0.196 1.196 30 H 0.078 0.922 31 H 0.098 0.902 32 H 0.098 0.902 33 H 0.153 0.847 34 H 0.156 0.844 35 H 0.152 0.848 36 H 0.145 0.855 37 H 0.139 0.861 38 H 0.146 0.854 39 H 0.250 0.750 40 H 0.090 0.910 41 H 0.090 0.910 42 H 0.063 0.937 43 H 0.103 0.897 44 H 0.102 0.898 45 H 0.081 0.919 46 H 0.060 0.940 47 H 0.166 0.834 48 H 0.116 0.884 49 H 0.085 0.915 50 H 0.230 0.770 51 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -7.301 28.243 6.868 29.969 hybrid contribution 0.746 -0.928 1.004 1.557 sum -6.556 27.315 7.871 29.173 Atomic orbital electron populations 1.20861 0.90280 1.03878 1.02086 1.20017 0.96988 0.92839 0.98790 1.21294 0.94733 0.98019 1.01275 1.21422 0.94572 0.98784 0.99709 1.21372 1.00790 0.92613 1.00933 1.21256 0.93911 0.98937 0.99882 1.19377 0.93682 0.94061 1.01120 1.20780 1.03398 0.96238 0.93810 1.20884 0.76687 0.80541 0.91535 1.90715 1.54984 1.52416 1.47352 1.46069 1.57265 1.23912 1.09565 1.20807 0.97478 0.93829 0.83442 0.91560 1.22085 0.96777 0.99951 1.02548 1.21762 0.96932 0.92064 1.04361 1.22002 0.98402 0.85862 1.00280 1.60052 1.06753 1.04767 1.60011 1.21512 0.93887 0.89645 1.01694 1.20877 0.84678 0.89599 0.82356 1.90487 1.26146 1.79542 1.54716 1.41946 1.10858 1.05998 1.62264 1.19687 0.97047 0.82482 1.47236 0.90225 1.26056 0.94253 1.04841 0.96165 1.69673 1.00907 1.37678 1.47881 0.84914 0.78197 0.76679 0.78460 1.19753 1.19519 1.19642 0.92201 0.90250 0.90217 0.84666 0.84371 0.84751 0.85506 0.86107 0.85374 0.74978 0.91010 0.91015 0.93704 0.89746 0.89817 0.91853 0.93955 0.83418 0.88424 0.91476 0.77007 0.91293 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.48 9.61 71.24 0.68 -0.79 16 2 C -0.09 -1.50 5.88 -19.86 -0.12 -1.62 16 3 C -0.14 -2.25 9.70 22.27 0.22 -2.03 16 4 C -0.13 -2.05 10.05 22.27 0.22 -1.83 16 5 C -0.14 -2.39 10.05 22.27 0.22 -2.17 16 6 C -0.12 -2.24 9.68 22.27 0.22 -2.02 16 7 C -0.08 -1.46 4.37 -19.87 -0.09 -1.55 16 8 C -0.10 -1.30 5.33 29.10 0.16 -1.15 16 9 C 0.52 9.35 7.79 87.66 0.68 10.03 16 10 O -0.58 -15.89 15.70 -3.03 -0.05 -15.93 16 11 N -0.72 -9.81 4.53 -442.55 -2.00 -11.81 16 12 C 0.15 2.47 2.57 44.99 0.12 2.58 16 13 H 0.07 1.44 7.58 -2.39 -0.02 1.42 16 14 C -0.16 -2.33 9.48 71.98 0.68 -1.65 16 15 C -0.11 -1.88 5.01 30.60 0.15 -1.73 16 16 C 0.06 1.34 5.57 86.30 0.48 1.82 16 17 N -0.68 -20.32 6.13 -517.94 -3.17 -23.50 16 18 C 0.07 2.19 6.17 85.56 0.53 2.72 16 19 C 0.44 20.66 7.82 87.66 0.69 21.34 16 20 O -0.62 -34.18 15.78 -3.08 -0.05 -34.23 16 21 N -0.57 -29.37 5.29 -306.98 -1.62 -30.99 16 22 C -0.33 -19.00 9.68 84.04 0.81 -18.19 16 23 H 0.08 4.80 7.16 -2.91 -0.02 4.78 16 24 C -0.01 -0.72 5.50 84.93 0.47 -0.25 16 25 N -0.92 -49.57 13.05 21.66 0.28 -49.29 16 26 Si 0.99 42.72 29.55 68.60 2.03 44.75 16 27 H -0.27 -11.40 7.11 99.48 0.71 -10.70 16 28 H -0.27 -10.98 7.11 99.48 0.71 -10.27 16 29 H -0.27 -11.68 7.11 99.48 0.71 -10.97 16 30 H 0.06 0.93 8.14 -2.39 -0.02 0.91 16 31 H 0.08 0.76 6.02 -2.39 -0.01 0.74 16 32 H 0.08 0.77 8.09 -2.39 -0.02 0.75 16 33 H 0.14 1.67 8.06 -2.91 -0.02 1.64 16 34 H 0.14 1.57 8.06 -2.92 -0.02 1.55 16 35 H 0.13 1.78 8.06 -2.91 -0.02 1.75 16 36 H 0.13 2.00 8.06 -2.91 -0.02 1.98 16 37 H 0.12 1.06 8.05 -2.39 -0.02 1.04 16 38 H 0.13 0.96 6.16 -2.39 -0.01 0.94 16 39 H 0.41 3.41 8.60 -92.71 -0.80 2.61 16 40 H 0.07 1.02 8.14 -2.39 -0.02 1.00 16 41 H 0.07 0.87 8.14 -2.38 -0.02 0.85 16 42 H 0.04 0.82 8.14 -2.39 -0.02 0.80 16 43 H 0.08 1.17 8.14 -2.39 -0.02 1.15 16 44 H 0.08 1.56 8.14 -2.39 -0.02 1.54 16 45 H 0.06 1.46 8.14 -2.39 -0.02 1.44 16 46 H 0.04 0.77 7.75 -2.39 -0.02 0.76 16 47 H 0.35 10.45 8.43 -89.69 -0.76 9.70 16 48 H 0.10 3.08 8.14 -2.39 -0.02 3.06 16 49 H 0.07 1.95 8.14 -2.39 -0.02 1.93 16 50 H 0.40 19.27 7.90 -92.71 -0.73 18.54 16 51 H 0.28 13.98 8.31 -92.71 -0.77 13.21 16 Total: -1.00 -75.51 425.16 0.21 -75.31 By element: Atomic # 1 Polarization: 43.50 SS G_CDS: -1.33 Total: 42.17 kcal Atomic # 6 Polarization: -2.59 SS G_CDS: 6.12 Total: 3.53 kcal Atomic # 7 Polarization: -109.07 SS G_CDS: -6.52 Total: -115.59 kcal Atomic # 8 Polarization: -50.07 SS G_CDS: -0.10 Total: -50.16 kcal Atomic # 14 Polarization: 42.72 SS G_CDS: 2.03 Total: 44.75 kcal Total: -75.51 0.21 -75.31 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001568706829.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.044 kcal (2) G-P(sol) polarization free energy of solvation -75.514 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.558 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.208 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.306 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.350 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.01 seconds