Wall clock time and date at job start Wed Apr 1 2020 05:50:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 N 1.31697 * 119.71491 * 2 1 4 4 C 1.31929 * 121.88259 * 180.26591 * 3 2 1 5 5 C 1.50694 * 119.46191 * 179.72296 * 4 3 2 6 6 C 1.53000 * 109.47090 * 95.02279 * 5 4 3 7 7 C 1.53001 * 109.47165 * 215.02296 * 5 4 3 8 8 C 1.38353 * 121.07347 * 359.75050 * 4 3 2 9 9 C 1.38349 * 119.30576 * 359.97050 * 8 4 3 10 10 C 1.39513 * 119.72141 * 179.72484 * 2 1 3 11 11 C 1.47844 * 120.55816 * 0.02562 * 10 2 1 12 12 O 1.21555 * 119.99516 * 353.99734 * 11 10 2 13 13 N 1.34778 * 120.00317 * 173.99576 * 11 10 2 14 14 C 1.46493 * 120.00141 * 179.97438 * 13 11 10 15 15 C 1.52992 * 109.47327 * 179.97438 * 14 13 11 16 16 O 1.42898 * 110.88716 * 303.87892 * 15 14 13 17 17 C 1.55163 * 111.00906 * 179.97438 * 15 14 13 18 18 C 1.54316 * 102.94556 * 206.38977 * 17 15 14 19 19 N 1.47027 * 107.27239 * 22.18668 * 18 17 15 20 20 C 1.36937 * 125.64943 * 181.02397 * 19 18 17 21 21 H 1.07996 * 120.00075 * 173.10738 * 20 19 18 22 22 C 1.38813 * 120.00001 * 353.10596 * 20 19 18 23 23 N 1.31618 * 120.00095 * 166.72587 * 22 20 19 24 24 Si 1.86798 * 119.99974 * 346.73282 * 22 20 19 25 25 H 1.48494 * 109.47592 * 65.98405 * 24 22 20 26 26 H 1.48505 * 109.47319 * 185.98409 * 24 22 20 27 27 H 1.48500 * 109.47046 * 305.98246 * 24 22 20 28 28 C 1.47423 * 108.70310 * 1.29404 * 19 18 17 29 29 H 1.08993 * 109.47346 * 262.84604 * 1 2 3 30 30 H 1.09002 * 109.47517 * 22.84939 * 1 2 3 31 31 H 1.09003 * 109.46992 * 142.84647 * 1 2 3 32 32 H 1.08999 * 109.47290 * 335.02261 * 5 4 3 33 33 H 1.08999 * 109.47069 * 59.99847 * 6 5 4 34 34 H 1.09002 * 109.47361 * 179.97438 * 6 5 4 35 35 H 1.09001 * 109.47294 * 300.00147 * 6 5 4 36 36 H 1.09001 * 109.47177 * 60.00031 * 7 5 4 37 37 H 1.09002 * 109.47388 * 180.02562 * 7 5 4 38 38 H 1.09008 * 109.47002 * 299.99993 * 7 5 4 39 39 H 1.08002 * 120.34361 * 180.02562 * 8 4 3 40 40 H 1.08006 * 120.85819 * 179.97438 * 9 8 4 41 41 H 0.96998 * 119.99496 * 359.97438 * 13 11 10 42 42 H 1.09000 * 109.47477 * 59.99842 * 14 13 11 43 43 H 1.09004 * 109.47014 * 300.00366 * 14 13 11 44 44 H 0.96706 * 113.99561 * 56.12262 * 16 15 14 45 45 H 1.08996 * 110.71683 * 88.02207 * 17 15 14 46 46 H 1.09004 * 110.86761 * 324.82353 * 17 15 14 47 47 H 1.09004 * 109.88145 * 262.77529 * 18 17 15 48 48 H 1.08991 * 109.89127 * 141.60853 * 18 17 15 49 49 H 0.97001 * 119.99928 * 5.08290 * 23 22 20 50 50 H 1.08997 * 110.36783 * 94.47677 * 28 19 18 51 51 H 1.09002 * 110.36814 * 216.80269 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1598 1.1438 0.0000 4 6 3.4781 1.1937 -0.0052 5 6 4.1691 2.5329 -0.0112 6 6 4.5207 2.9318 1.4234 7 6 5.4496 2.4423 -0.8438 8 6 4.2365 0.0366 -0.0058 9 6 3.5987 -1.1911 -0.0002 10 6 2.1987 -1.2116 0.0058 11 6 1.4657 -2.4955 0.0114 12 8 0.2551 -2.5037 0.1211 13 7 2.1397 -3.6568 -0.1051 14 6 1.4134 -4.9291 -0.0990 15 6 2.4063 -6.0838 -0.2449 16 8 3.1980 -5.9291 -1.4245 17 6 1.6734 -7.4514 -0.2421 18 6 2.7522 -8.4208 0.2848 19 7 3.7334 -7.6186 1.0301 20 6 4.8603 -8.1012 1.6405 21 1 5.5774 -7.4168 2.0690 22 6 5.0808 -9.4700 1.7083 23 7 6.2653 -9.9296 2.0519 24 14 3.6963 -10.6598 1.3120 25 1 3.3361 -10.5397 -0.1236 26 1 4.1401 -12.0482 1.5964 27 1 2.5122 -10.3376 2.1481 28 6 3.2998 -6.2097 1.0170 29 1 -0.3633 -0.1280 1.0196 30 1 -0.3634 0.9470 -0.3990 31 1 -0.3633 -0.8191 -0.6207 32 1 3.5062 3.2818 -0.4445 33 1 5.1836 2.1828 1.8566 34 1 5.0210 3.9002 1.4190 35 1 3.6085 2.9963 2.0165 36 1 5.1991 2.1581 -1.8659 37 1 5.9497 3.4108 -0.8478 38 1 6.1125 1.6933 -0.4105 39 1 5.3152 0.0912 -0.0096 40 1 4.1661 -2.1102 -0.0009 41 1 3.1057 -3.6502 -0.1930 42 1 0.7086 -4.9492 -0.9302 43 1 0.8703 -5.0329 0.8404 44 1 3.6751 -5.0892 -1.4705 45 1 1.3671 -7.7268 -1.2512 46 1 0.8138 -7.4299 0.4279 47 1 3.2410 -8.9213 -0.5511 48 1 2.2972 -9.1581 0.9461 49 1 6.9625 -9.3146 2.3288 50 1 2.7261 -5.9810 1.9151 51 1 4.1624 -5.5480 0.9381 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001569757397.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:50:33 Heat of formation + Delta-G solvation = -45.195669 kcal Electronic energy + Delta-G solvation = -30840.842942 eV Core-core repulsion = 26740.036331 eV Total energy + Delta-G solvation = -4100.806611 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -42.03277 -40.85690 -39.86310 -37.12034 -36.67353 -35.59660 -34.41577 -33.88639 -32.55844 -31.69089 -30.30879 -28.87719 -27.97422 -27.37353 -25.81935 -24.75903 -23.50643 -22.83608 -22.11434 -21.52447 -21.07938 -19.63413 -19.33821 -18.14522 -17.72126 -17.15796 -16.76000 -16.70712 -16.55776 -16.19861 -15.71051 -15.68785 -15.46918 -15.27852 -15.00140 -14.88428 -14.60801 -14.44253 -14.21418 -14.03492 -13.91990 -13.51890 -13.43438 -13.23490 -13.14184 -13.06504 -12.94475 -12.88510 -12.83384 -12.26572 -12.08785 -12.01479 -11.88887 -11.74770 -11.47698 -11.22597 -11.08220 -10.94755 -10.88920 -10.74246 -10.46241 -10.32401 -9.86204 -9.10526 -8.62425 -5.46588 -0.45584 0.13085 1.39657 1.49063 1.70111 1.71801 1.90390 2.53687 2.67556 3.01200 3.04725 3.08155 3.25844 3.43914 3.54250 3.57986 3.63394 3.68345 3.78646 3.94073 4.09852 4.11969 4.23633 4.27992 4.36920 4.49691 4.55546 4.60132 4.63626 4.66702 4.71152 4.73537 4.78698 4.80781 4.83720 4.85915 4.91738 4.98891 4.99243 5.01279 5.11923 5.17048 5.19764 5.30406 5.34161 5.41005 5.49857 5.57722 6.08414 6.27815 6.68567 6.81858 6.85802 7.01963 7.43962 8.07245 8.88908 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.015784 B = 0.002380 C = 0.002156 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1773.468228 B =11760.303016 C =12981.720452 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.102 4.102 2 C 0.176 3.824 3 N -0.510 5.510 4 C 0.157 3.843 5 C -0.049 4.049 6 C -0.139 4.139 7 C -0.145 4.145 8 C -0.182 4.182 9 C -0.033 4.033 10 C -0.211 4.211 11 C 0.567 3.433 12 O -0.554 6.554 13 N -0.714 5.714 14 C 0.118 3.882 15 C 0.121 3.879 16 O -0.549 6.549 17 C -0.106 4.106 18 C 0.091 3.909 19 N -0.629 5.629 20 C -0.306 4.306 21 H 0.049 0.951 22 C -0.087 4.087 23 N -0.968 5.968 24 Si 1.115 2.885 25 H -0.254 1.254 26 H -0.315 1.315 27 H -0.279 1.279 28 C 0.111 3.889 29 H 0.079 0.921 30 H 0.075 0.925 31 H 0.092 0.908 32 H 0.086 0.914 33 H 0.061 0.939 34 H 0.082 0.918 35 H 0.044 0.956 36 H 0.055 0.945 37 H 0.078 0.922 38 H 0.071 0.929 39 H 0.171 0.829 40 H 0.163 0.837 41 H 0.407 0.593 42 H 0.088 0.912 43 H 0.083 0.917 44 H 0.382 0.618 45 H 0.102 0.898 46 H 0.110 0.890 47 H 0.035 0.965 48 H 0.034 0.966 49 H 0.246 0.754 50 H 0.039 0.961 51 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.550 26.258 -7.425 28.313 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.038 3.962 3 N -0.220 5.220 4 C 0.019 3.981 5 C -0.069 4.069 6 C -0.197 4.197 7 C -0.203 4.203 8 C -0.202 4.202 9 C -0.059 4.059 10 C -0.217 4.217 11 C 0.355 3.645 12 O -0.434 6.434 13 N -0.367 5.367 14 C -0.007 4.007 15 C 0.078 3.922 16 O -0.356 6.356 17 C -0.144 4.144 18 C -0.033 4.033 19 N -0.356 5.356 20 C -0.435 4.435 21 H 0.067 0.933 22 C -0.279 4.279 23 N -0.613 5.613 24 Si 0.943 3.057 25 H -0.180 1.180 26 H -0.244 1.244 27 H -0.206 1.206 28 C -0.015 4.015 29 H 0.097 0.903 30 H 0.094 0.906 31 H 0.110 0.890 32 H 0.104 0.896 33 H 0.080 0.920 34 H 0.101 0.899 35 H 0.063 0.937 36 H 0.074 0.926 37 H 0.097 0.903 38 H 0.090 0.910 39 H 0.188 0.812 40 H 0.180 0.820 41 H 0.244 0.756 42 H 0.106 0.894 43 H 0.102 0.898 44 H 0.231 0.769 45 H 0.121 0.879 46 H 0.129 0.871 47 H 0.053 0.947 48 H 0.051 0.949 49 H 0.055 0.945 50 H 0.057 0.943 51 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -9.413 24.807 -7.618 27.605 hybrid contribution 2.078 1.167 0.829 2.523 sum -7.336 25.974 -6.789 27.831 Atomic orbital electron populations 1.20939 0.87534 1.03634 1.03799 1.21637 0.97865 0.86907 0.89774 1.67494 1.10467 1.28734 1.15277 1.21992 0.88904 0.97137 0.90072 1.20207 0.97118 0.91162 0.98368 1.21795 1.01397 1.02730 0.93751 1.21938 0.95437 1.03756 0.99164 1.22246 1.03255 0.91594 1.03056 1.22081 0.92325 1.00259 0.91216 1.20684 0.95286 0.94064 1.11625 1.18103 0.86743 0.83689 0.75938 1.90733 1.14577 1.87414 1.50660 1.45719 1.11318 1.05266 1.74385 1.21829 0.94264 0.80639 1.03919 1.22472 0.90153 0.94695 0.84841 1.86618 1.64902 1.43524 1.40543 1.22612 0.96843 0.91247 1.03724 1.22210 0.90964 0.95695 0.94447 1.44747 1.24836 1.04179 1.61882 1.20058 0.97332 0.92650 1.33472 0.93323 1.27097 1.02653 0.97698 1.00467 1.71026 1.02877 1.37215 1.50208 0.83325 0.71733 0.72443 0.78149 1.17959 1.24417 1.20650 1.22448 0.96760 0.86017 0.96250 0.90300 0.90628 0.89004 0.89617 0.91954 0.89950 0.93722 0.92604 0.90259 0.90976 0.81209 0.81963 0.75613 0.89364 0.89847 0.76881 0.87948 0.87124 0.94708 0.94874 0.94461 0.94335 0.93420 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -2.20 8.84 71.24 0.63 -1.57 16 2 C 0.18 4.00 6.82 42.89 0.29 4.29 16 3 N -0.51 -11.18 10.17 -171.07 -1.74 -12.92 16 4 C 0.16 2.68 5.79 42.57 0.25 2.92 16 5 C -0.05 -0.59 3.23 -11.54 -0.04 -0.63 16 6 C -0.14 -1.46 9.18 71.98 0.66 -0.80 16 7 C -0.15 -1.12 8.61 71.98 0.62 -0.50 16 8 C -0.18 -2.55 9.16 22.32 0.20 -2.34 16 9 C -0.03 -0.51 9.63 22.73 0.22 -0.29 16 10 C -0.21 -4.37 5.89 -19.99 -0.12 -4.48 16 11 C 0.57 12.92 7.71 86.79 0.67 13.59 16 12 O -0.55 -15.53 13.39 -3.89 -0.05 -15.58 16 13 N -0.71 -13.67 5.15 -465.99 -2.40 -16.07 16 14 C 0.12 2.54 4.89 86.38 0.42 2.96 16 15 C 0.12 3.25 0.97 -9.32 -0.01 3.24 16 16 O -0.55 -15.02 13.21 -148.98 -1.97 -16.99 16 17 C -0.11 -3.06 6.15 31.78 0.20 -2.86 16 18 C 0.09 3.72 4.63 86.73 0.40 4.12 16 19 N -0.63 -29.51 3.35 -691.55 -2.32 -31.83 16 20 C -0.31 -17.63 10.59 84.03 0.89 -16.74 16 21 H 0.05 2.99 8.06 -2.91 -0.02 2.97 16 22 C -0.09 -5.23 5.50 84.86 0.47 -4.76 16 23 N -0.97 -62.87 13.70 21.65 0.30 -62.57 16 24 Si 1.12 54.28 24.50 68.60 1.68 55.96 16 25 H -0.25 -11.07 5.43 99.48 0.54 -10.53 16 26 H -0.31 -15.85 7.11 99.48 0.71 -15.14 16 27 H -0.28 -12.53 6.54 99.48 0.65 -11.88 16 28 C 0.11 3.88 6.22 86.94 0.54 4.42 16 29 H 0.08 1.71 8.14 -2.39 -0.02 1.70 16 30 H 0.07 1.45 8.14 -2.39 -0.02 1.43 16 31 H 0.09 2.16 5.91 -2.39 -0.01 2.14 16 32 H 0.09 1.13 8.14 -2.39 -0.02 1.11 16 33 H 0.06 0.61 8.14 -2.39 -0.02 0.59 16 34 H 0.08 0.59 8.14 -2.39 -0.02 0.57 16 35 H 0.04 0.60 8.14 -2.39 -0.02 0.58 16 36 H 0.05 0.49 8.14 -2.39 -0.02 0.47 16 37 H 0.08 0.42 8.14 -2.39 -0.02 0.40 16 38 H 0.07 0.42 6.48 -2.38 -0.02 0.41 16 39 H 0.17 1.39 6.29 -2.91 -0.02 1.38 16 40 H 0.16 1.59 6.56 -2.91 -0.02 1.57 16 41 H 0.41 6.06 5.42 -92.71 -0.50 5.56 16 42 H 0.09 1.85 8.14 -2.39 -0.02 1.83 16 43 H 0.08 1.86 8.08 -2.38 -0.02 1.84 16 44 H 0.38 7.30 7.69 -74.05 -0.57 6.73 16 45 H 0.10 2.58 8.14 -2.39 -0.02 2.56 16 46 H 0.11 2.61 8.04 -2.38 -0.02 2.59 16 47 H 0.04 1.56 6.23 -2.39 -0.01 1.54 16 48 H 0.03 1.41 3.98 -2.39 -0.01 1.40 16 49 H 0.25 15.99 8.73 -92.71 -0.81 15.18 16 50 H 0.04 1.33 7.99 -2.39 -0.02 1.31 16 51 H 0.05 1.61 8.14 -2.39 -0.02 1.59 16 Total: -1.00 -78.95 395.39 -0.58 -79.53 By element: Atomic # 1 Polarization: 20.27 SS G_CDS: -0.37 Total: 19.90 kcal Atomic # 6 Polarization: -5.73 SS G_CDS: 6.29 Total: 0.57 kcal Atomic # 7 Polarization: -117.23 SS G_CDS: -6.16 Total: -123.39 kcal Atomic # 8 Polarization: -30.55 SS G_CDS: -2.02 Total: -32.57 kcal Atomic # 14 Polarization: 54.28 SS G_CDS: 1.68 Total: 55.96 kcal Total: -78.95 -0.58 -79.53 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001569757397.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.334 kcal (2) G-P(sol) polarization free energy of solvation -78.952 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.618 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.578 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.530 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.196 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds