Wall clock time and date at job start Wed Apr 1 2020 04:58:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38366 * 119.92723 * 2 1 4 4 C 1.38357 * 120.29331 * 180.02562 * 3 2 1 5 5 C 1.50694 * 119.92957 * 180.02562 * 4 3 2 6 6 C 1.37963 * 120.14265 * 359.96860 * 4 3 2 7 7 C 1.39575 * 119.85339 * 0.02562 * 6 4 3 8 8 C 1.47851 * 120.14212 * 179.97438 * 7 6 4 9 9 O 1.21548 * 119.99721 * 0.02562 * 8 7 6 10 10 N 1.34771 * 119.99564 * 180.02562 * 8 7 6 11 11 C 1.46505 * 119.99622 * 180.02562 * 10 8 7 12 12 C 1.52997 * 109.47212 * 179.97438 * 11 10 8 13 13 C 1.52992 * 109.47482 * 179.97438 * 12 11 10 14 14 H 1.09001 * 109.47563 * 305.00337 * 13 12 11 15 15 C 1.52997 * 109.47448 * 184.99813 * 13 12 11 16 16 N 1.46910 * 109.47127 * 65.00091 * 13 12 11 17 17 C 1.46900 * 111.00108 * 205.00462 * 16 13 12 18 18 C 1.50692 * 109.47257 * 179.97438 * 17 16 13 19 19 O 1.21300 * 119.99825 * 359.97438 * 18 17 16 20 20 N 1.34771 * 120.00248 * 179.97438 * 18 17 16 21 21 C 1.37100 * 120.00059 * 180.02562 * 20 18 17 22 22 H 1.07998 * 120.00291 * 359.97438 * 21 20 18 23 23 C 1.38953 * 120.00022 * 180.02562 * 21 20 18 24 24 N 1.31415 * 119.99890 * 0.02562 * 23 21 20 25 25 Si 1.86804 * 120.00119 * 179.97438 * 23 21 20 26 26 H 1.48489 * 109.46979 * 89.99770 * 25 23 21 27 27 H 1.48502 * 109.46945 * 210.00113 * 25 23 21 28 28 H 1.48501 * 109.46791 * 329.99741 * 25 23 21 29 29 C 1.37954 * 119.92959 * 180.24653 * 2 1 3 30 30 H 1.08994 * 109.47049 * 90.00398 * 1 2 3 31 31 H 1.08998 * 109.47169 * 210.00455 * 1 2 3 32 32 H 1.09008 * 109.46894 * 330.00294 * 1 2 3 33 33 H 1.07995 * 119.85182 * 359.96862 * 3 2 1 34 34 H 1.09007 * 109.46845 * 269.97543 * 5 4 3 35 35 H 1.09006 * 109.47334 * 29.96666 * 5 4 3 36 36 H 1.08999 * 109.47798 * 149.97283 * 5 4 3 37 37 H 1.08000 * 120.07196 * 180.02562 * 6 4 3 38 38 H 0.96996 * 120.00772 * 359.97438 * 10 8 7 39 39 H 1.09002 * 109.47068 * 299.99729 * 11 10 8 40 40 H 1.09001 * 109.47372 * 59.99816 * 11 10 8 41 41 H 1.09002 * 109.47153 * 300.00008 * 12 11 10 42 42 H 1.08998 * 109.47533 * 59.99637 * 12 11 10 43 43 H 1.09000 * 109.47346 * 300.00002 * 15 13 12 44 44 H 1.09007 * 109.46964 * 60.00529 * 15 13 12 45 45 H 1.09004 * 109.47224 * 180.02562 * 15 13 12 46 46 H 1.00903 * 110.99433 * 328.95625 * 16 13 12 47 47 H 1.09001 * 109.46729 * 299.99669 * 17 16 13 48 48 H 1.08996 * 109.47288 * 59.99365 * 17 16 13 49 49 H 0.96995 * 120.00099 * 0.02562 * 20 18 17 50 50 H 0.97001 * 119.99822 * 180.02562 * 24 23 21 51 51 H 1.08000 * 120.07340 * 0.02562 * 29 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1973 1.1992 0.0000 4 6 3.5808 1.2080 -0.0005 5 6 4.3243 2.5188 0.0001 6 6 4.2812 0.0194 -0.0004 7 6 3.5910 -1.1938 -0.0003 8 6 4.3352 -2.4713 -0.0007 9 8 5.5507 -2.4666 -0.0007 10 7 3.6657 -3.6410 -0.0012 11 6 4.4031 -4.9070 -0.0010 12 6 3.4134 -6.0737 -0.0009 13 6 4.1833 -7.3957 -0.0014 14 1 4.8753 -7.4129 -0.8434 15 6 3.1983 -8.5597 -0.1270 16 7 4.9360 -7.5246 1.2536 17 6 6.0980 -8.4069 1.0824 18 6 6.8440 -8.5140 2.3874 19 8 6.4470 -7.9138 3.3639 20 7 7.9522 -9.2765 2.4695 21 6 8.6306 -9.3743 3.6569 22 1 8.2772 -8.8400 4.5263 23 6 9.7735 -10.1601 3.7414 24 7 10.2044 -10.8090 2.6830 25 14 10.6982 -10.2928 5.3590 26 1 10.1586 -11.4307 6.1457 27 1 12.1407 -10.5185 5.0875 28 1 10.5306 -9.0345 6.1296 29 6 2.1953 -1.1956 -0.0051 30 1 -0.3633 -0.0001 -1.0276 31 1 -0.3633 -0.8899 0.5139 32 1 -0.3633 0.8901 0.5138 33 1 1.6537 2.1323 -0.0005 34 1 4.5036 2.8352 -1.0276 35 1 3.7294 3.2738 0.5141 36 1 5.2777 2.3956 0.5138 37 1 5.3612 0.0276 -0.0004 38 1 2.6958 -3.6448 -0.0008 39 1 5.0303 -4.9622 -0.8908 40 1 5.0297 -4.9625 0.8892 41 1 2.7865 -6.0183 0.8891 42 1 2.7864 -6.0185 -0.8908 43 1 2.5064 -8.5426 0.7151 44 1 2.6398 -8.4642 -1.0583 45 1 3.7469 -9.5016 -0.1269 46 1 5.2170 -6.6199 1.6011 47 1 5.7604 -9.3964 0.7742 48 1 6.7582 -7.9943 0.3196 49 1 8.2698 -9.7561 1.6885 50 1 11.0020 -11.3578 2.7421 51 1 1.6553 -2.1309 -0.0096 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001570472871.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:58:26 Heat of formation + Delta-G solvation = -66.309395 kcal Electronic energy + Delta-G solvation = -29036.393623 eV Core-core repulsion = 24934.671452 eV Total energy + Delta-G solvation = -4101.722171 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -40.58104 -39.04223 -38.40452 -37.13810 -34.95687 -33.96815 -33.82881 -32.68558 -31.46339 -31.02180 -29.06289 -27.78567 -27.02335 -26.38800 -24.74725 -23.86634 -22.72427 -21.07431 -20.80408 -20.05504 -19.20665 -17.86872 -17.72966 -16.76650 -16.33693 -16.17162 -15.90694 -15.45645 -15.18961 -14.97470 -14.63905 -14.47652 -14.35717 -13.88001 -13.78711 -13.64351 -13.61978 -13.53328 -13.38672 -13.04891 -12.95496 -12.48490 -12.38817 -12.16025 -11.96523 -11.93411 -11.84603 -11.67481 -11.54339 -11.46975 -11.28984 -11.22896 -11.03510 -10.76706 -10.35993 -10.17835 -10.10877 -9.46822 -9.37922 -9.12774 -9.01518 -8.40423 -8.04001 -7.91591 -6.37660 -3.78220 0.50791 0.92815 2.58974 2.88084 3.21183 3.29373 3.35772 3.49340 3.95432 4.12291 4.26973 4.30348 4.32022 4.35019 4.61401 4.69114 4.81623 4.86467 4.90751 4.94790 5.01436 5.11420 5.15016 5.15976 5.22702 5.29050 5.34255 5.39625 5.41815 5.42776 5.55608 5.62238 5.71151 5.71750 5.82261 5.84879 5.90293 5.93778 6.02807 6.04771 6.07542 6.14131 6.18630 6.28019 6.37752 6.50749 7.23806 7.27372 7.59288 7.69266 7.99262 8.10717 8.65732 9.22146 9.58807 10.10460 10.80142 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.013126 B = 0.001766 C = 0.001617 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2132.712189 B =15848.551360 C =17310.595758 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.090 4.090 3 C -0.098 4.098 4 C -0.090 4.090 5 C -0.115 4.115 6 C -0.066 4.066 7 C -0.123 4.123 8 C 0.555 3.445 9 O -0.531 6.531 10 N -0.723 5.723 11 C 0.112 3.888 12 C -0.132 4.132 13 C 0.086 3.914 14 H 0.045 0.955 15 C -0.139 4.139 16 N -0.666 5.666 17 C 0.050 3.950 18 C 0.441 3.559 19 O -0.583 6.583 20 N -0.564 5.564 21 C -0.298 4.298 22 H 0.103 0.897 23 C 0.021 3.979 24 N -0.902 5.902 25 Si 0.930 3.070 26 H -0.278 1.278 27 H -0.284 1.284 28 H -0.270 1.270 29 C -0.094 4.094 30 H 0.072 0.928 31 H 0.069 0.931 32 H 0.068 0.932 33 H 0.126 0.874 34 H 0.072 0.928 35 H 0.068 0.932 36 H 0.070 0.930 37 H 0.136 0.864 38 H 0.399 0.601 39 H 0.069 0.931 40 H 0.075 0.925 41 H 0.081 0.919 42 H 0.075 0.925 43 H 0.062 0.938 44 H 0.052 0.948 45 H 0.057 0.943 46 H 0.349 0.651 47 H 0.086 0.914 48 H 0.044 0.956 49 H 0.392 0.608 50 H 0.271 0.729 51 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.311 20.977 -12.319 31.691 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.090 4.090 3 C -0.116 4.116 4 C -0.090 4.090 5 C -0.172 4.172 6 C -0.085 4.085 7 C -0.126 4.126 8 C 0.342 3.658 9 O -0.408 6.408 10 N -0.375 5.375 11 C -0.011 4.011 12 C -0.171 4.171 13 C -0.025 4.025 14 H 0.063 0.937 15 C -0.197 4.197 16 N -0.301 5.301 17 C -0.083 4.083 18 C 0.226 3.774 19 O -0.467 6.467 20 N -0.201 5.201 21 C -0.428 4.428 22 H 0.121 0.879 23 C -0.180 4.180 24 N -0.544 5.544 25 Si 0.757 3.243 26 H -0.204 1.204 27 H -0.210 1.210 28 H -0.194 1.194 29 C -0.113 4.113 30 H 0.090 0.910 31 H 0.088 0.912 32 H 0.087 0.913 33 H 0.144 0.856 34 H 0.091 0.909 35 H 0.087 0.913 36 H 0.089 0.911 37 H 0.154 0.846 38 H 0.234 0.766 39 H 0.087 0.913 40 H 0.093 0.907 41 H 0.100 0.900 42 H 0.094 0.906 43 H 0.082 0.918 44 H 0.071 0.929 45 H 0.076 0.924 46 H 0.171 0.829 47 H 0.104 0.896 48 H 0.062 0.938 49 H 0.225 0.775 50 H 0.081 0.919 51 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -19.909 20.743 -11.423 30.937 hybrid contribution 0.883 -0.029 -0.246 0.917 sum -19.026 20.713 -11.669 30.450 Atomic orbital electron populations 1.20808 0.90608 1.03158 1.02572 1.19836 0.96367 0.92754 1.00092 1.21129 0.93538 0.97748 0.99210 1.19908 0.93774 0.95423 0.99885 1.20815 1.00258 0.93482 1.02641 1.21182 1.00807 0.90353 0.96170 1.19927 0.93577 0.93585 1.05559 1.18293 0.87307 0.83696 0.76500 1.90814 1.13390 1.87510 1.49088 1.45867 1.10319 1.05709 1.75645 1.21520 0.94977 0.81661 1.02966 1.21984 0.98437 0.93156 1.03484 1.21453 0.95404 0.93919 0.91682 0.93695 1.21785 0.98925 0.97899 1.01077 1.60214 1.24709 1.18258 1.26927 1.21723 0.91478 0.98503 0.96579 1.19821 0.83285 0.84492 0.89754 1.90524 1.68650 1.49288 1.38263 1.41858 1.23046 1.42287 1.12890 1.19706 1.06103 1.27038 0.89939 0.87940 1.25263 0.97389 0.96473 0.98880 1.69616 1.24848 1.30873 1.29029 0.85854 0.78216 0.78844 0.81357 1.20420 1.20954 1.19432 1.21150 0.92779 0.98045 0.99277 0.90954 0.91231 0.91314 0.85633 0.90902 0.91319 0.91085 0.84588 0.76561 0.91253 0.90703 0.89999 0.90621 0.91850 0.92891 0.92373 0.82930 0.89575 0.93833 0.77472 0.91921 0.85687 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.50 10.01 36.00 0.36 -0.14 16 2 C -0.09 -0.63 5.87 -104.68 -0.61 -1.25 16 3 C -0.10 -0.69 9.35 -39.49 -0.37 -1.06 16 4 C -0.09 -0.73 5.87 -104.68 -0.61 -1.34 16 5 C -0.12 -0.67 10.01 36.00 0.36 -0.31 16 6 C -0.07 -0.68 9.24 -39.18 -0.36 -1.04 16 7 C -0.12 -1.30 5.87 -104.97 -0.62 -1.91 16 8 C 0.55 7.10 7.77 -12.33 -0.10 7.01 16 9 O -0.53 -9.02 16.35 5.32 0.09 -8.93 16 10 N -0.72 -7.32 5.51 -61.25 -0.34 -7.66 16 11 C 0.11 1.27 5.50 -4.04 -0.02 1.25 16 12 C -0.13 -1.25 4.92 -26.74 -0.13 -1.38 16 13 C 0.09 1.02 2.65 -67.71 -0.18 0.84 16 14 H 0.05 0.52 7.80 -51.93 -0.40 0.12 16 15 C -0.14 -1.51 9.41 37.16 0.35 -1.16 16 16 N -0.67 -10.85 5.93 -108.00 -0.64 -11.49 16 17 C 0.05 0.91 5.96 -4.98 -0.03 0.88 16 18 C 0.44 10.75 7.82 -10.99 -0.09 10.66 16 19 O -0.58 -16.32 15.78 5.54 0.09 -16.23 16 20 N -0.56 -14.71 5.29 -10.96 -0.06 -14.77 16 21 C -0.30 -8.54 9.68 -14.93 -0.14 -8.68 16 22 H 0.10 3.08 7.16 -52.49 -0.38 2.70 16 23 C 0.02 0.59 5.50 -17.47 -0.10 0.49 16 24 N -0.90 -25.03 13.05 55.50 0.72 -24.31 16 25 Si 0.93 21.56 29.55 -169.99 -5.02 16.53 16 26 H -0.28 -6.36 7.11 56.52 0.40 -5.95 16 27 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 28 H -0.27 -6.26 7.11 56.52 0.40 -5.86 16 29 C -0.09 -0.74 9.19 -39.19 -0.36 -1.10 16 30 H 0.07 0.26 8.14 -51.93 -0.42 -0.16 16 31 H 0.07 0.26 8.08 -51.93 -0.42 -0.16 16 32 H 0.07 0.25 8.08 -51.92 -0.42 -0.17 16 33 H 0.13 0.60 8.06 -52.49 -0.42 0.18 16 34 H 0.07 0.36 8.14 -51.92 -0.42 -0.06 16 35 H 0.07 0.31 8.08 -51.93 -0.42 -0.11 16 36 H 0.07 0.41 8.08 -51.93 -0.42 -0.01 16 37 H 0.14 1.47 7.65 -52.49 -0.40 1.07 16 38 H 0.40 2.77 6.51 -40.82 -0.27 2.51 16 39 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 40 H 0.07 1.04 6.43 -51.93 -0.33 0.71 16 41 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 42 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 43 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 44 H 0.05 0.45 8.14 -51.92 -0.42 0.03 16 45 H 0.06 0.68 7.45 -51.93 -0.39 0.30 16 46 H 0.35 6.03 6.17 -39.29 -0.24 5.79 16 47 H 0.09 1.44 7.44 -51.93 -0.39 1.05 16 48 H 0.04 0.73 8.05 -51.93 -0.42 0.31 16 49 H 0.39 9.75 7.90 -40.82 -0.32 9.43 16 50 H 0.27 7.11 8.31 -40.82 -0.34 6.77 16 51 H 0.13 0.68 6.41 -52.49 -0.34 0.34 16 LS Contribution 422.07 15.07 6.36 6.36 Total: -1.00 -35.21 422.07 -9.52 -44.74 By element: Atomic # 1 Polarization: 22.06 SS G_CDS: -8.07 Total: 13.99 kcal Atomic # 6 Polarization: 4.41 SS G_CDS: -2.65 Total: 1.76 kcal Atomic # 7 Polarization: -57.91 SS G_CDS: -0.31 Total: -58.22 kcal Atomic # 8 Polarization: -25.33 SS G_CDS: 0.17 Total: -25.16 kcal Atomic # 14 Polarization: 21.56 SS G_CDS: -5.02 Total: 16.53 kcal Total LS contribution 6.36 Total: 6.36 kcal Total: -35.21 -9.52 -44.74 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001570472871.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.574 kcal (2) G-P(sol) polarization free energy of solvation -35.212 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.786 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.523 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.735 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.309 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds