Wall clock time and date at job start Wed Apr 1 2020 04:58:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38366 * 119.92723 * 2 1 4 4 C 1.38357 * 120.29331 * 180.02562 * 3 2 1 5 5 C 1.50694 * 119.92957 * 180.02562 * 4 3 2 6 6 C 1.37963 * 120.14265 * 359.96860 * 4 3 2 7 7 C 1.39575 * 119.85339 * 0.02562 * 6 4 3 8 8 C 1.47851 * 120.14212 * 179.97438 * 7 6 4 9 9 O 1.21548 * 119.99721 * 0.02562 * 8 7 6 10 10 N 1.34771 * 119.99564 * 180.02562 * 8 7 6 11 11 C 1.46505 * 119.99622 * 180.02562 * 10 8 7 12 12 C 1.52997 * 109.47212 * 179.97438 * 11 10 8 13 13 C 1.52992 * 109.47482 * 179.97438 * 12 11 10 14 14 H 1.09001 * 109.47563 * 305.00337 * 13 12 11 15 15 C 1.52997 * 109.47448 * 184.99813 * 13 12 11 16 16 N 1.46910 * 109.47127 * 65.00091 * 13 12 11 17 17 C 1.46900 * 111.00108 * 205.00462 * 16 13 12 18 18 C 1.50692 * 109.47257 * 179.97438 * 17 16 13 19 19 O 1.21300 * 119.99825 * 359.97438 * 18 17 16 20 20 N 1.34771 * 120.00248 * 179.97438 * 18 17 16 21 21 C 1.37100 * 120.00059 * 180.02562 * 20 18 17 22 22 H 1.07998 * 120.00291 * 359.97438 * 21 20 18 23 23 C 1.38953 * 120.00022 * 180.02562 * 21 20 18 24 24 N 1.31415 * 119.99890 * 0.02562 * 23 21 20 25 25 Si 1.86804 * 120.00119 * 179.97438 * 23 21 20 26 26 H 1.48489 * 109.46979 * 89.99770 * 25 23 21 27 27 H 1.48502 * 109.46945 * 210.00113 * 25 23 21 28 28 H 1.48501 * 109.46791 * 329.99741 * 25 23 21 29 29 C 1.37954 * 119.92959 * 180.24653 * 2 1 3 30 30 H 1.08994 * 109.47049 * 90.00398 * 1 2 3 31 31 H 1.08998 * 109.47169 * 210.00455 * 1 2 3 32 32 H 1.09008 * 109.46894 * 330.00294 * 1 2 3 33 33 H 1.07995 * 119.85182 * 359.96862 * 3 2 1 34 34 H 1.09007 * 109.46845 * 269.97543 * 5 4 3 35 35 H 1.09006 * 109.47334 * 29.96666 * 5 4 3 36 36 H 1.08999 * 109.47798 * 149.97283 * 5 4 3 37 37 H 1.08000 * 120.07196 * 180.02562 * 6 4 3 38 38 H 0.96996 * 120.00772 * 359.97438 * 10 8 7 39 39 H 1.09002 * 109.47068 * 299.99729 * 11 10 8 40 40 H 1.09001 * 109.47372 * 59.99816 * 11 10 8 41 41 H 1.09002 * 109.47153 * 300.00008 * 12 11 10 42 42 H 1.08998 * 109.47533 * 59.99637 * 12 11 10 43 43 H 1.09000 * 109.47346 * 300.00002 * 15 13 12 44 44 H 1.09007 * 109.46964 * 60.00529 * 15 13 12 45 45 H 1.09004 * 109.47224 * 180.02562 * 15 13 12 46 46 H 1.00903 * 110.99433 * 328.95625 * 16 13 12 47 47 H 1.09001 * 109.46729 * 299.99669 * 17 16 13 48 48 H 1.08996 * 109.47288 * 59.99365 * 17 16 13 49 49 H 0.96995 * 120.00099 * 0.02562 * 20 18 17 50 50 H 0.97001 * 119.99822 * 180.02562 * 24 23 21 51 51 H 1.08000 * 120.07340 * 0.02562 * 29 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1973 1.1992 0.0000 4 6 3.5808 1.2080 -0.0005 5 6 4.3243 2.5188 0.0001 6 6 4.2812 0.0194 -0.0004 7 6 3.5910 -1.1938 -0.0003 8 6 4.3352 -2.4713 -0.0007 9 8 5.5507 -2.4666 -0.0007 10 7 3.6657 -3.6410 -0.0012 11 6 4.4031 -4.9070 -0.0010 12 6 3.4134 -6.0737 -0.0009 13 6 4.1833 -7.3957 -0.0014 14 1 4.8753 -7.4129 -0.8434 15 6 3.1983 -8.5597 -0.1270 16 7 4.9360 -7.5246 1.2536 17 6 6.0980 -8.4069 1.0824 18 6 6.8440 -8.5140 2.3874 19 8 6.4470 -7.9138 3.3639 20 7 7.9522 -9.2765 2.4695 21 6 8.6306 -9.3743 3.6569 22 1 8.2772 -8.8400 4.5263 23 6 9.7735 -10.1601 3.7414 24 7 10.2044 -10.8090 2.6830 25 14 10.6982 -10.2928 5.3590 26 1 10.1586 -11.4307 6.1457 27 1 12.1407 -10.5185 5.0875 28 1 10.5306 -9.0345 6.1296 29 6 2.1953 -1.1956 -0.0051 30 1 -0.3633 -0.0001 -1.0276 31 1 -0.3633 -0.8899 0.5139 32 1 -0.3633 0.8901 0.5138 33 1 1.6537 2.1323 -0.0005 34 1 4.5036 2.8352 -1.0276 35 1 3.7294 3.2738 0.5141 36 1 5.2777 2.3956 0.5138 37 1 5.3612 0.0276 -0.0004 38 1 2.6958 -3.6448 -0.0008 39 1 5.0303 -4.9622 -0.8908 40 1 5.0297 -4.9625 0.8892 41 1 2.7865 -6.0183 0.8891 42 1 2.7864 -6.0185 -0.8908 43 1 2.5064 -8.5426 0.7151 44 1 2.6398 -8.4642 -1.0583 45 1 3.7469 -9.5016 -0.1269 46 1 5.2170 -6.6199 1.6011 47 1 5.7604 -9.3964 0.7742 48 1 6.7582 -7.9943 0.3196 49 1 8.2698 -9.7561 1.6885 50 1 11.0020 -11.3578 2.7421 51 1 1.6553 -2.1309 -0.0096 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001570472871.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:58:25 Heat of formation + Delta-G solvation = -91.467337 kcal Electronic energy + Delta-G solvation = -29037.484554 eV Core-core repulsion = 24934.671452 eV Total energy + Delta-G solvation = -4102.813101 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -41.40366 -40.27539 -39.74204 -38.39440 -36.14496 -35.81445 -34.48318 -33.49458 -33.26919 -32.40423 -29.93930 -28.24381 -28.08319 -27.55754 -26.00775 -25.24865 -23.59842 -21.77518 -21.59864 -21.19498 -20.90105 -19.93965 -18.54098 -17.92179 -17.49438 -17.02024 -16.98947 -16.81952 -16.45809 -16.16320 -16.02183 -15.64961 -15.48039 -15.22143 -14.94943 -14.59463 -14.43417 -14.30177 -14.08536 -14.00499 -13.91379 -13.52677 -13.36633 -13.34394 -13.16877 -12.88517 -12.81103 -12.62099 -12.55399 -12.50046 -12.44257 -12.27691 -12.21898 -12.12788 -12.00949 -11.77213 -11.52832 -11.10645 -10.38091 -10.31169 -10.03907 -9.79605 -9.60913 -9.34281 -8.48689 -5.97674 -0.19944 0.31826 1.36245 1.39566 1.52817 1.74617 2.00818 2.02553 2.27607 2.77942 2.91517 3.18161 3.48549 3.56564 3.71764 3.80181 3.82021 3.94437 4.06760 4.12440 4.28424 4.30258 4.34417 4.42074 4.46758 4.50033 4.53114 4.59372 4.64018 4.67052 4.78854 4.83503 4.89894 4.94765 4.96611 4.99540 5.02561 5.15310 5.17607 5.24059 5.30245 5.34017 5.38648 5.47347 5.49805 5.55289 5.89669 5.93039 6.11692 6.38236 6.41463 6.57773 7.08458 7.10168 7.53402 8.08954 8.68733 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.013126 B = 0.001766 C = 0.001617 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2132.712189 B =15848.551360 C =17310.595758 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.090 4.090 3 C -0.096 4.096 4 C -0.095 4.095 5 C -0.115 4.115 6 C -0.092 4.092 7 C -0.145 4.145 8 C 0.549 3.451 9 O -0.587 6.587 10 N -0.706 5.706 11 C 0.115 3.885 12 C -0.117 4.117 13 C 0.082 3.918 14 H 0.052 0.948 15 C -0.135 4.135 16 N -0.680 5.680 17 C 0.064 3.936 18 C 0.436 3.564 19 O -0.624 6.624 20 N -0.573 5.573 21 C -0.336 4.336 22 H 0.078 0.922 23 C -0.014 4.014 24 N -0.919 5.919 25 Si 0.994 3.006 26 H -0.269 1.269 27 H -0.269 1.269 28 H -0.275 1.275 29 C -0.092 4.092 30 H 0.084 0.916 31 H 0.077 0.923 32 H 0.080 0.920 33 H 0.154 0.846 34 H 0.081 0.919 35 H 0.087 0.913 36 H 0.063 0.937 37 H 0.115 0.885 38 H 0.417 0.583 39 H 0.062 0.938 40 H 0.042 0.958 41 H 0.084 0.916 42 H 0.111 0.889 43 H 0.056 0.944 44 H 0.083 0.917 45 H 0.046 0.954 46 H 0.340 0.660 47 H 0.106 0.894 48 H 0.061 0.939 49 H 0.396 0.604 50 H 0.278 0.722 51 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.002 21.478 -13.395 34.202 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.090 4.090 3 C -0.114 4.114 4 C -0.095 4.095 5 C -0.171 4.171 6 C -0.111 4.111 7 C -0.148 4.148 8 C 0.338 3.662 9 O -0.468 6.468 10 N -0.359 5.359 11 C -0.009 4.009 12 C -0.155 4.155 13 C -0.027 4.027 14 H 0.070 0.930 15 C -0.193 4.193 16 N -0.315 5.315 17 C -0.068 4.068 18 C 0.223 3.777 19 O -0.511 6.511 20 N -0.210 5.210 21 C -0.465 4.465 22 H 0.096 0.904 23 C -0.213 4.213 24 N -0.560 5.560 25 Si 0.818 3.182 26 H -0.194 1.194 27 H -0.194 1.194 28 H -0.200 1.200 29 C -0.111 4.111 30 H 0.102 0.898 31 H 0.096 0.904 32 H 0.098 0.902 33 H 0.171 0.829 34 H 0.100 0.900 35 H 0.106 0.894 36 H 0.082 0.918 37 H 0.133 0.867 38 H 0.256 0.744 39 H 0.080 0.920 40 H 0.061 0.939 41 H 0.103 0.897 42 H 0.130 0.870 43 H 0.075 0.925 44 H 0.102 0.898 45 H 0.065 0.935 46 H 0.160 0.840 47 H 0.124 0.876 48 H 0.079 0.921 49 H 0.230 0.770 50 H 0.088 0.912 51 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges -22.656 21.214 -12.538 33.475 hybrid contribution 1.644 -0.129 0.054 1.650 sum -21.012 21.085 -12.485 32.279 Atomic orbital electron populations 1.20876 0.88270 1.04221 1.03608 1.20234 0.97998 0.92229 0.98588 1.21516 0.93047 0.99142 0.97691 1.20159 0.94649 0.95343 0.99365 1.20864 1.00055 0.92852 1.03370 1.21205 1.00150 0.91646 0.98145 1.19864 0.94789 0.92282 1.07869 1.18793 0.86869 0.85061 0.75489 1.90774 1.15796 1.88318 1.51927 1.45711 1.11147 1.04693 1.74313 1.21412 0.95452 0.82969 1.01075 1.21899 0.97674 0.90608 1.05320 1.21641 0.95519 0.95809 0.89754 0.92962 1.21775 0.98479 0.96605 1.02449 1.60273 1.23886 1.17510 1.29783 1.21580 0.91960 1.00288 0.92969 1.20926 0.82607 0.82662 0.91489 1.90487 1.69560 1.50534 1.40516 1.41931 1.23676 1.42975 1.12408 1.19669 1.07784 1.28623 0.90440 0.90444 1.26068 0.97471 0.95449 1.02341 1.69675 1.25183 1.30701 1.30458 0.84914 0.77433 0.78656 0.77236 1.19409 1.19397 1.19957 1.21406 0.91498 0.99783 0.98409 0.89781 0.90368 0.90156 0.82875 0.90041 0.89443 0.91797 0.86735 0.74440 0.92001 0.93948 0.89726 0.87037 0.92478 0.89782 0.93481 0.83983 0.87599 0.92107 0.76966 0.91250 0.83262 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.58 10.01 71.24 0.71 0.13 16 2 C -0.09 -1.04 5.87 -19.90 -0.12 -1.15 16 3 C -0.10 -1.14 9.35 22.33 0.21 -0.93 16 4 C -0.10 -1.50 5.87 -19.90 -0.12 -1.62 16 5 C -0.11 -1.26 10.01 71.23 0.71 -0.55 16 6 C -0.09 -2.03 9.24 22.53 0.21 -1.83 16 7 C -0.14 -3.14 5.87 -20.09 -0.12 -3.26 16 8 C 0.55 14.83 7.77 86.79 0.67 15.50 16 9 O -0.59 -21.72 16.35 -3.87 -0.06 -21.78 16 10 N -0.71 -14.15 5.51 -465.97 -2.57 -16.72 16 11 C 0.12 2.61 5.50 86.38 0.48 3.09 16 12 C -0.12 -1.96 4.92 30.59 0.15 -1.81 16 13 C 0.08 1.81 2.65 44.91 0.12 1.93 16 14 H 0.05 1.11 7.80 -2.39 -0.02 1.09 16 15 C -0.14 -2.58 9.41 71.98 0.68 -1.91 16 16 N -0.68 -22.07 5.93 -495.59 -2.94 -25.01 16 17 C 0.06 2.34 5.96 85.55 0.51 2.85 16 18 C 0.44 21.85 7.82 87.66 0.69 22.53 16 19 O -0.62 -36.37 15.78 -3.09 -0.05 -36.42 16 20 N -0.57 -30.73 5.29 -306.99 -1.62 -32.35 16 21 C -0.34 -19.81 9.68 84.04 0.81 -19.00 16 22 H 0.08 4.88 7.16 -2.91 -0.02 4.86 16 23 C -0.01 -0.75 5.50 84.93 0.47 -0.28 16 24 N -0.92 -50.93 13.05 21.66 0.28 -50.65 16 25 Si 0.99 44.34 29.55 68.60 2.03 46.37 16 26 H -0.27 -11.55 7.11 99.48 0.71 -10.85 16 27 H -0.27 -11.32 7.11 99.48 0.71 -10.61 16 28 H -0.27 -12.38 7.11 99.48 0.71 -11.68 16 29 C -0.09 -1.32 9.19 22.52 0.21 -1.11 16 30 H 0.08 0.29 8.14 -2.39 -0.02 0.27 16 31 H 0.08 0.30 8.08 -2.39 -0.02 0.28 16 32 H 0.08 0.26 8.08 -2.38 -0.02 0.25 16 33 H 0.15 0.93 8.06 -2.91 -0.02 0.91 16 34 H 0.08 0.75 8.14 -2.38 -0.02 0.73 16 35 H 0.09 0.62 8.08 -2.38 -0.02 0.60 16 36 H 0.06 0.78 8.08 -2.39 -0.02 0.76 16 37 H 0.11 2.88 7.65 -2.91 -0.02 2.86 16 38 H 0.42 5.05 6.51 -92.71 -0.60 4.45 16 39 H 0.06 1.50 8.14 -2.39 -0.02 1.48 16 40 H 0.04 1.26 6.43 -2.39 -0.02 1.24 16 41 H 0.08 1.43 8.14 -2.39 -0.02 1.41 16 42 H 0.11 1.14 8.14 -2.39 -0.02 1.12 16 43 H 0.06 1.17 8.14 -2.39 -0.02 1.15 16 44 H 0.08 1.10 8.14 -2.38 -0.02 1.08 16 45 H 0.05 1.00 7.45 -2.38 -0.02 0.99 16 46 H 0.34 12.13 6.17 -89.69 -0.55 11.58 16 47 H 0.11 3.43 7.44 -2.39 -0.02 3.42 16 48 H 0.06 2.00 8.05 -2.39 -0.02 1.98 16 49 H 0.40 20.14 7.90 -92.71 -0.73 19.40 16 50 H 0.28 14.38 8.31 -92.71 -0.77 13.60 16 51 H 0.15 1.23 6.41 -2.91 -0.02 1.21 16 Total: -1.00 -80.80 422.07 0.41 -80.38 By element: Atomic # 1 Polarization: 44.51 SS G_CDS: -0.93 Total: 43.58 kcal Atomic # 6 Polarization: 6.32 SS G_CDS: 6.27 Total: 12.59 kcal Atomic # 7 Polarization: -117.87 SS G_CDS: -6.85 Total: -124.72 kcal Atomic # 8 Polarization: -58.09 SS G_CDS: -0.11 Total: -58.20 kcal Atomic # 14 Polarization: 44.34 SS G_CDS: 2.03 Total: 46.37 kcal Total: -80.80 0.41 -80.38 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001570472871.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.084 kcal (2) G-P(sol) polarization free energy of solvation -80.798 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.882 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.414 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.384 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.467 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds