Wall clock time and date at job start Wed Apr 1 2020 05:49:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38353 * 119.46232 * 2 1 4 4 C 1.38348 * 119.30572 * 180.02562 * 3 2 1 5 5 C 1.40028 * 118.29162 * 359.97438 * 4 3 2 6 6 C 1.47837 * 120.56113 * 179.97438 * 5 4 3 7 7 O 1.21557 * 119.99457 * 174.37899 * 6 5 4 8 8 N 1.34772 * 120.00208 * 354.37665 * 6 5 4 9 9 C 1.46495 * 120.00014 * 180.02562 * 8 6 5 10 10 C 1.53002 * 109.47375 * 180.02562 * 9 8 6 11 11 O 1.42901 * 109.47240 * 64.99636 * 10 9 8 12 12 C 1.42895 * 113.99810 * 180.02562 * 11 10 9 13 13 C 1.53008 * 109.46904 * 180.02562 * 12 11 10 14 14 N 1.46498 * 109.47066 * 64.99855 * 13 12 11 15 15 C 1.46495 * 120.00089 * 269.99884 * 14 13 12 16 16 C 1.36938 * 119.99838 * 90.00589 * 14 13 12 17 17 H 1.07995 * 119.99944 * 17.52050 * 16 14 13 18 18 C 1.38814 * 119.99862 * 197.52477 * 16 14 13 19 19 N 1.31621 * 120.00008 * 19.94230 * 18 16 14 20 20 Si 1.86798 * 120.00162 * 199.94279 * 18 16 14 21 21 H 1.48500 * 109.46818 * 89.99652 * 20 18 16 22 22 H 1.48493 * 109.47392 * 209.99901 * 20 18 16 23 23 H 1.48499 * 109.46904 * 330.00180 * 20 18 16 24 24 C 1.39525 * 118.87685 * 0.02562 * 5 4 3 25 25 C 1.50701 * 119.71384 * 179.72059 * 24 5 4 26 26 C 1.53004 * 117.49557 * 173.96027 * 25 24 5 27 27 C 1.53004 * 117.49865 * 105.33871 * 25 24 5 28 28 N 1.31693 * 120.56651 * 359.97438 * 24 5 4 29 29 H 1.09002 * 109.46952 * 90.00067 * 1 2 3 30 30 H 1.08994 * 109.47236 * 209.99929 * 1 2 3 31 31 H 1.09000 * 109.46918 * 330.00029 * 1 2 3 32 32 H 1.08002 * 120.34512 * 0.02562 * 3 2 1 33 33 H 1.08004 * 120.85869 * 179.97438 * 4 3 2 34 34 H 0.96999 * 119.99988 * 0.02562 * 8 6 5 35 35 H 1.09001 * 109.47149 * 300.00098 * 9 8 6 36 36 H 1.09005 * 109.47660 * 60.00115 * 9 8 6 37 37 H 1.08995 * 109.47302 * 185.00558 * 10 9 8 38 38 H 1.09001 * 109.46653 * 304.99856 * 10 9 8 39 39 H 1.08994 * 109.47394 * 299.99912 * 12 11 10 40 40 H 1.08997 * 109.47290 * 60.00177 * 12 11 10 41 41 H 1.09002 * 109.46872 * 185.00285 * 13 12 11 42 42 H 1.09001 * 109.46957 * 304.99725 * 13 12 11 43 43 H 1.09002 * 109.47420 * 95.48066 * 15 14 13 44 44 H 1.09001 * 109.47189 * 215.48226 * 15 14 13 45 45 H 1.08999 * 109.47183 * 335.48350 * 15 14 13 46 46 H 0.97000 * 119.99924 * 179.97438 * 19 18 16 47 47 H 1.08994 * 115.55039 * 319.66529 * 25 24 5 48 48 H 1.09001 * 117.49796 * 359.97438 * 26 25 24 49 49 H 1.08997 * 117.49632 * 145.02067 * 26 25 24 50 50 H 1.08993 * 117.49924 * 214.97590 * 27 25 24 51 51 H 1.09001 * 117.49475 * 359.97438 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1875 1.2046 0.0000 4 6 3.5710 1.2008 -0.0005 5 6 4.2313 -0.0340 -0.0005 6 6 5.7083 -0.0966 -0.0016 7 8 6.2712 -1.1690 0.1015 8 7 6.4307 1.0353 -0.1171 9 6 7.8943 0.9732 -0.1188 10 6 8.4647 2.3859 -0.2604 11 8 8.1203 3.1565 0.8927 12 6 8.6071 4.4996 0.8608 13 6 8.1820 5.2266 2.1382 14 7 8.8341 4.6053 3.2936 15 6 8.1794 3.4998 3.9974 16 6 10.0555 5.0581 3.7159 17 1 10.4107 6.0277 3.3997 18 6 10.8371 4.2707 4.5502 19 7 10.6201 2.9747 4.6253 20 14 12.1969 5.0504 5.5662 21 1 11.6527 5.4693 6.8829 22 1 13.2881 4.0646 5.7725 23 1 12.7306 6.2373 4.8511 24 6 3.4716 -1.2043 -0.0005 25 6 4.1627 -2.5435 -0.0069 26 6 3.2879 -3.7906 0.1362 27 6 4.1731 -3.3394 1.2999 28 7 2.1559 -1.1487 0.0000 29 1 -0.3633 0.0000 -1.0277 30 1 -0.3633 -0.8899 0.5138 31 1 -0.3633 0.8900 0.5138 32 1 1.6443 2.1381 0.0004 33 1 4.1275 2.1265 -0.0010 34 1 5.9815 1.8911 -0.1990 35 1 8.2404 0.5342 0.8170 36 1 8.2311 0.3596 -0.9544 37 1 9.5495 2.3323 -0.3510 38 1 8.0487 2.8580 -1.1504 39 1 9.6949 4.4903 0.7933 40 1 8.1937 5.0153 -0.0059 41 1 8.4760 6.2743 2.0749 42 1 7.1000 5.1590 2.2518 43 1 8.5551 2.5513 3.6135 44 1 8.3934 3.5705 5.0639 45 1 7.1025 3.5549 3.8385 46 1 11.1665 2.4244 5.2080 47 1 5.0418 -2.6158 -0.6471 48 1 2.2126 -3.6423 0.2354 49 1 3.5914 -4.6836 -0.4101 50 1 5.0588 -3.9355 1.5190 51 1 3.6803 -2.8941 2.1642 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001571342575.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:49:56 Heat of formation + Delta-G solvation = 6.021171 kcal Electronic energy + Delta-G solvation = -30469.099535 eV Core-core repulsion = 26370.513853 eV Total energy + Delta-G solvation = -4098.585682 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.32 seconds Orbital eigenvalues (eV) -41.05499 -39.17774 -37.66738 -37.04131 -35.45516 -34.48969 -33.35659 -32.26720 -31.47014 -29.70614 -28.39314 -27.68854 -25.72001 -24.85991 -23.35306 -23.04545 -22.47802 -22.14893 -20.91279 -20.64881 -20.35326 -17.93034 -17.00576 -16.84364 -16.37289 -16.11004 -15.91538 -15.40833 -15.12428 -14.96359 -14.78196 -14.52422 -14.35654 -14.14823 -13.84814 -13.39535 -13.37473 -13.13287 -12.89687 -12.76892 -12.50377 -12.47217 -12.16430 -11.91899 -11.59272 -11.51558 -11.42377 -10.94811 -10.89596 -10.79783 -10.75411 -10.52721 -10.52239 -10.10207 -10.05774 -10.02093 -9.93460 -9.78074 -9.45310 -9.13859 -9.06465 -8.85881 -8.46218 -6.74277 -5.67407 -3.07273 0.43506 0.93133 2.77424 3.10283 3.40765 3.47418 3.48774 3.49552 3.79834 3.97417 4.11268 4.31832 4.40370 4.54683 4.55489 4.74324 4.96758 4.98385 5.04929 5.09240 5.18346 5.22985 5.23300 5.26643 5.41673 5.43558 5.51815 5.61688 5.64400 5.66593 5.69387 5.72127 5.84107 5.88041 5.96699 6.06890 6.14715 6.16365 6.19212 6.20497 6.36459 6.44237 6.51271 6.73124 6.90560 7.45806 7.47833 7.70294 7.73899 7.82180 7.93621 8.18798 8.42231 9.28227 9.94090 10.42660 11.37264 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.013930 B = 0.002271 C = 0.002184 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2009.569152 B =12327.493278 C =12819.302355 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C 0.152 3.848 3 C -0.187 4.187 4 C -0.035 4.035 5 C -0.187 4.187 6 C 0.562 3.438 7 O -0.527 6.527 8 N -0.714 5.714 9 C 0.125 3.875 10 C 0.050 3.950 11 O -0.367 6.367 12 C 0.042 3.958 13 C 0.153 3.847 14 N -0.596 5.596 15 C 0.173 3.827 16 C -0.259 4.259 17 H 0.069 0.931 18 C 0.001 3.999 19 N -0.898 5.898 20 Si 0.899 3.101 21 H -0.289 1.289 22 H -0.293 1.293 23 H -0.281 1.281 24 C 0.223 3.777 25 C -0.107 4.107 26 C -0.169 4.169 27 C -0.150 4.150 28 N -0.487 5.487 29 H 0.081 0.919 30 H 0.079 0.921 31 H 0.078 0.922 32 H 0.141 0.859 33 H 0.141 0.859 34 H 0.401 0.599 35 H 0.083 0.917 36 H 0.079 0.921 37 H 0.063 0.937 38 H 0.044 0.956 39 H 0.049 0.951 40 H 0.025 0.975 41 H 0.059 0.941 42 H 0.043 0.957 43 H 0.032 0.968 44 H 0.035 0.965 45 H -0.004 1.004 46 H 0.251 0.749 47 H 0.139 0.861 48 H 0.103 0.897 49 H 0.094 0.906 50 H 0.100 0.900 51 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.621 -5.744 -14.126 24.068 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.014 3.986 3 C -0.206 4.206 4 C -0.061 4.061 5 C -0.192 4.192 6 C 0.348 3.652 7 O -0.405 6.405 8 N -0.366 5.366 9 C 0.002 3.998 10 C -0.028 4.028 11 O -0.286 6.286 12 C -0.038 4.038 13 C 0.025 3.975 14 N -0.318 5.318 15 C 0.028 3.972 16 C -0.388 4.388 17 H 0.086 0.914 18 C -0.198 4.198 19 N -0.542 5.542 20 Si 0.729 3.271 21 H -0.216 1.216 22 H -0.219 1.219 23 H -0.206 1.206 24 C 0.085 3.915 25 C -0.126 4.126 26 C -0.207 4.207 27 C -0.188 4.188 28 N -0.197 5.197 29 H 0.100 0.900 30 H 0.098 0.902 31 H 0.096 0.904 32 H 0.159 0.841 33 H 0.159 0.841 34 H 0.236 0.764 35 H 0.101 0.899 36 H 0.097 0.903 37 H 0.081 0.919 38 H 0.062 0.938 39 H 0.067 0.933 40 H 0.043 0.957 41 H 0.077 0.923 42 H 0.062 0.938 43 H 0.051 0.949 44 H 0.053 0.947 45 H 0.014 0.986 46 H 0.061 0.939 47 H 0.156 0.844 48 H 0.122 0.878 49 H 0.112 0.888 50 H 0.118 0.882 51 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -18.686 -7.467 -13.770 24.383 hybrid contribution 1.436 1.876 0.269 2.377 sum -17.250 -5.591 -13.501 22.608 Atomic orbital electron populations 1.20778 0.88454 1.03816 1.03329 1.21504 0.97218 0.88171 0.91671 1.21892 0.94491 0.99567 1.04693 1.21801 0.94752 0.97326 0.92210 1.20720 0.94648 0.94584 1.09223 1.17928 0.86131 0.84262 0.76889 1.90752 1.72139 1.28249 1.49345 1.45810 1.07510 1.09113 1.74181 1.21431 0.78702 0.96158 1.03477 1.22616 0.99613 0.91171 0.89389 1.88010 1.76707 1.24179 1.39731 1.23539 0.98702 0.82139 0.99413 1.20883 0.95904 0.94940 0.85813 1.43942 1.19375 1.39088 1.29390 1.20680 0.89895 0.90873 0.95704 1.19197 0.94553 0.98942 1.26136 0.91359 1.24883 0.98103 0.94922 1.01855 1.70157 1.41331 1.02959 1.39791 0.86346 0.81470 0.78323 0.80966 1.21597 1.21926 1.20642 1.20505 0.88152 0.93475 0.89374 1.21092 1.00859 0.86916 1.03705 1.22996 0.98581 0.96993 1.02092 1.22840 1.02078 1.02265 0.91591 1.67332 1.08888 1.29031 1.14444 0.90042 0.90216 0.90354 0.84110 0.84130 0.76425 0.89853 0.90325 0.91901 0.93833 0.93264 0.95701 0.92302 0.93842 0.94919 0.94658 0.98588 0.93874 0.84384 0.87814 0.88799 0.88154 0.89224 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.67 10.16 36.01 0.37 -0.30 16 2 C 0.15 1.48 6.78 -82.51 -0.56 0.92 16 3 C -0.19 -1.63 9.72 -39.50 -0.38 -2.01 16 4 C -0.03 -0.35 9.64 -38.87 -0.37 -0.72 16 5 C -0.19 -2.36 5.89 -104.82 -0.62 -2.98 16 6 C 0.56 8.02 7.74 -12.34 -0.10 7.92 16 7 O -0.53 -8.83 13.52 5.32 0.07 -8.76 16 8 N -0.71 -9.21 5.46 -61.25 -0.33 -9.54 16 9 C 0.13 1.74 6.06 -4.04 -0.02 1.71 16 10 C 0.05 0.70 6.07 37.16 0.23 0.92 16 11 O -0.37 -6.64 9.84 -35.23 -0.35 -6.99 16 12 C 0.04 0.74 6.28 37.16 0.23 0.98 16 13 C 0.15 3.05 6.11 -4.04 -0.02 3.03 16 14 N -0.60 -15.07 2.89 -181.12 -0.52 -15.59 16 15 C 0.17 4.44 8.64 59.84 0.52 4.96 16 16 C -0.26 -7.12 9.67 -15.06 -0.15 -7.27 16 17 H 0.07 1.82 7.89 -52.49 -0.41 1.41 16 18 C 0.00 0.03 4.96 -17.43 -0.09 -0.05 16 19 N -0.90 -26.66 10.81 55.49 0.60 -26.06 16 20 Si 0.90 22.01 29.60 -169.99 -5.03 16.98 16 21 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 22 H -0.29 -7.26 7.11 56.52 0.40 -6.86 16 23 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 24 C 0.22 2.92 6.49 -82.17 -0.53 2.38 16 25 C -0.11 -1.37 4.43 -91.77 -0.41 -1.77 16 26 C -0.17 -1.80 10.02 -26.73 -0.27 -2.07 16 27 C -0.15 -1.78 10.23 -26.73 -0.27 -2.05 16 28 N -0.49 -5.86 9.21 -5.42 -0.05 -5.91 16 29 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16 30 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 31 H 0.08 0.35 8.07 -51.93 -0.42 -0.07 16 32 H 0.14 0.82 8.06 -52.49 -0.42 0.39 16 33 H 0.14 1.10 6.56 -52.48 -0.34 0.76 16 34 H 0.40 4.39 6.61 -40.82 -0.27 4.12 16 35 H 0.08 1.40 8.14 -51.93 -0.42 0.98 16 36 H 0.08 0.97 8.14 -51.93 -0.42 0.55 16 37 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 38 H 0.04 0.50 8.14 -51.93 -0.42 0.08 16 39 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 40 H 0.02 0.36 8.14 -51.93 -0.42 -0.06 16 41 H 0.06 1.10 8.03 -51.93 -0.42 0.69 16 42 H 0.04 0.80 7.86 -51.93 -0.41 0.39 16 43 H 0.03 0.92 7.44 -51.93 -0.39 0.53 16 44 H 0.03 0.97 7.18 -51.93 -0.37 0.59 16 45 H 0.00 -0.10 7.83 -51.93 -0.41 -0.51 16 46 H 0.25 7.26 8.31 -40.82 -0.34 6.92 16 47 H 0.14 1.90 6.42 -51.93 -0.33 1.56 16 48 H 0.10 1.11 7.56 -51.93 -0.39 0.72 16 49 H 0.09 0.85 8.14 -51.93 -0.42 0.43 16 50 H 0.10 1.14 8.14 -51.93 -0.42 0.71 16 51 H 0.09 1.09 8.14 -51.93 -0.42 0.67 16 LS Contribution 418.93 15.07 6.31 6.31 Total: -1.00 -33.67 418.93 -10.13 -43.79 By element: Atomic # 1 Polarization: 10.54 SS G_CDS: -8.37 Total: 2.17 kcal Atomic # 6 Polarization: 6.04 SS G_CDS: -2.45 Total: 3.59 kcal Atomic # 7 Polarization: -56.79 SS G_CDS: -0.31 Total: -57.10 kcal Atomic # 8 Polarization: -15.47 SS G_CDS: -0.27 Total: -15.74 kcal Atomic # 14 Polarization: 22.01 SS G_CDS: -5.03 Total: 16.98 kcal Total LS contribution 6.31 Total: 6.31 kcal Total: -33.67 -10.13 -43.79 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001571342575.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.812 kcal (2) G-P(sol) polarization free energy of solvation -33.665 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.147 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.125 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.790 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.021 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.32 seconds