Wall clock time and date at job start Wed Apr 1 2020 05:49:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38353 * 119.46232 * 2 1 4 4 C 1.38348 * 119.30572 * 180.02562 * 3 2 1 5 5 C 1.40028 * 118.29162 * 359.97438 * 4 3 2 6 6 C 1.47837 * 120.56113 * 179.97438 * 5 4 3 7 7 O 1.21557 * 119.99457 * 174.37899 * 6 5 4 8 8 N 1.34772 * 120.00208 * 354.37665 * 6 5 4 9 9 C 1.46495 * 120.00014 * 180.02562 * 8 6 5 10 10 C 1.53002 * 109.47375 * 180.02562 * 9 8 6 11 11 O 1.42901 * 109.47240 * 64.99636 * 10 9 8 12 12 C 1.42895 * 113.99810 * 180.02562 * 11 10 9 13 13 C 1.53008 * 109.46904 * 180.02562 * 12 11 10 14 14 N 1.46498 * 109.47066 * 64.99855 * 13 12 11 15 15 C 1.46495 * 120.00089 * 269.99884 * 14 13 12 16 16 C 1.36938 * 119.99838 * 90.00589 * 14 13 12 17 17 H 1.07995 * 119.99944 * 17.52050 * 16 14 13 18 18 C 1.38814 * 119.99862 * 197.52477 * 16 14 13 19 19 N 1.31621 * 120.00008 * 19.94230 * 18 16 14 20 20 Si 1.86798 * 120.00162 * 199.94279 * 18 16 14 21 21 H 1.48500 * 109.46818 * 89.99652 * 20 18 16 22 22 H 1.48493 * 109.47392 * 209.99901 * 20 18 16 23 23 H 1.48499 * 109.46904 * 330.00180 * 20 18 16 24 24 C 1.39525 * 118.87685 * 0.02562 * 5 4 3 25 25 C 1.50701 * 119.71384 * 179.72059 * 24 5 4 26 26 C 1.53004 * 117.49557 * 173.96027 * 25 24 5 27 27 C 1.53004 * 117.49865 * 105.33871 * 25 24 5 28 28 N 1.31693 * 120.56651 * 359.97438 * 24 5 4 29 29 H 1.09002 * 109.46952 * 90.00067 * 1 2 3 30 30 H 1.08994 * 109.47236 * 209.99929 * 1 2 3 31 31 H 1.09000 * 109.46918 * 330.00029 * 1 2 3 32 32 H 1.08002 * 120.34512 * 0.02562 * 3 2 1 33 33 H 1.08004 * 120.85869 * 179.97438 * 4 3 2 34 34 H 0.96999 * 119.99988 * 0.02562 * 8 6 5 35 35 H 1.09001 * 109.47149 * 300.00098 * 9 8 6 36 36 H 1.09005 * 109.47660 * 60.00115 * 9 8 6 37 37 H 1.08995 * 109.47302 * 185.00558 * 10 9 8 38 38 H 1.09001 * 109.46653 * 304.99856 * 10 9 8 39 39 H 1.08994 * 109.47394 * 299.99912 * 12 11 10 40 40 H 1.08997 * 109.47290 * 60.00177 * 12 11 10 41 41 H 1.09002 * 109.46872 * 185.00285 * 13 12 11 42 42 H 1.09001 * 109.46957 * 304.99725 * 13 12 11 43 43 H 1.09002 * 109.47420 * 95.48066 * 15 14 13 44 44 H 1.09001 * 109.47189 * 215.48226 * 15 14 13 45 45 H 1.08999 * 109.47183 * 335.48350 * 15 14 13 46 46 H 0.97000 * 119.99924 * 179.97438 * 19 18 16 47 47 H 1.08994 * 115.55039 * 319.66529 * 25 24 5 48 48 H 1.09001 * 117.49796 * 359.97438 * 26 25 24 49 49 H 1.08997 * 117.49632 * 145.02067 * 26 25 24 50 50 H 1.08993 * 117.49924 * 214.97590 * 27 25 24 51 51 H 1.09001 * 117.49475 * 359.97438 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1875 1.2046 0.0000 4 6 3.5710 1.2008 -0.0005 5 6 4.2313 -0.0340 -0.0005 6 6 5.7083 -0.0966 -0.0016 7 8 6.2712 -1.1690 0.1015 8 7 6.4307 1.0353 -0.1171 9 6 7.8943 0.9732 -0.1188 10 6 8.4647 2.3859 -0.2604 11 8 8.1203 3.1565 0.8927 12 6 8.6071 4.4996 0.8608 13 6 8.1820 5.2266 2.1382 14 7 8.8341 4.6053 3.2936 15 6 8.1794 3.4998 3.9974 16 6 10.0555 5.0581 3.7159 17 1 10.4107 6.0277 3.3997 18 6 10.8371 4.2707 4.5502 19 7 10.6201 2.9747 4.6253 20 14 12.1969 5.0504 5.5662 21 1 11.6527 5.4693 6.8829 22 1 13.2881 4.0646 5.7725 23 1 12.7306 6.2373 4.8511 24 6 3.4716 -1.2043 -0.0005 25 6 4.1627 -2.5435 -0.0069 26 6 3.2879 -3.7906 0.1362 27 6 4.1731 -3.3394 1.2999 28 7 2.1559 -1.1487 0.0000 29 1 -0.3633 0.0000 -1.0277 30 1 -0.3633 -0.8899 0.5138 31 1 -0.3633 0.8900 0.5138 32 1 1.6443 2.1381 0.0004 33 1 4.1275 2.1265 -0.0010 34 1 5.9815 1.8911 -0.1990 35 1 8.2404 0.5342 0.8170 36 1 8.2311 0.3596 -0.9544 37 1 9.5495 2.3323 -0.3510 38 1 8.0487 2.8580 -1.1504 39 1 9.6949 4.4903 0.7933 40 1 8.1937 5.0153 -0.0059 41 1 8.4760 6.2743 2.0749 42 1 7.1000 5.1590 2.2518 43 1 8.5551 2.5513 3.6135 44 1 8.3934 3.5705 5.0639 45 1 7.1025 3.5549 3.8385 46 1 11.1665 2.4244 5.2080 47 1 5.0418 -2.6158 -0.6471 48 1 2.2126 -3.6423 0.2354 49 1 3.5914 -4.6836 -0.4101 50 1 5.0588 -3.9355 1.5190 51 1 3.6803 -2.8941 2.1642 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001571342575.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:49:54 Heat of formation + Delta-G solvation = -15.222389 kcal Electronic energy + Delta-G solvation = -30470.020725 eV Core-core repulsion = 26370.513853 eV Total energy + Delta-G solvation = -4099.506872 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -41.93224 -40.21668 -39.01912 -37.95260 -37.21101 -35.75273 -34.19737 -33.38709 -33.02331 -31.00115 -29.60153 -28.77576 -27.81824 -25.76246 -24.83797 -24.14722 -23.50674 -23.11218 -22.14522 -21.79697 -21.65699 -18.90092 -18.77143 -17.92520 -17.57593 -17.22229 -17.09609 -16.72569 -16.38917 -16.19199 -15.81215 -15.67476 -15.38750 -15.22861 -15.18233 -15.03296 -14.83615 -14.11793 -14.06673 -13.78635 -13.60579 -13.32131 -13.18193 -13.05604 -12.99749 -12.81228 -12.71723 -12.53824 -12.48484 -12.39675 -12.33599 -11.99937 -11.77942 -11.69600 -11.66390 -11.46045 -10.99683 -10.85904 -10.59085 -10.43401 -10.34094 -10.19975 -9.72471 -8.79581 -7.79651 -5.20938 -0.40919 0.15305 1.46046 1.48541 1.56400 1.78835 2.07046 2.53311 2.61466 2.85673 2.99355 3.10696 3.32451 3.51861 3.67580 3.71264 3.75852 3.95079 3.97460 4.10028 4.16562 4.17639 4.22389 4.35761 4.45980 4.53414 4.59345 4.61887 4.63650 4.68463 4.71219 4.74937 4.80989 4.87643 4.92289 4.95403 4.97943 5.00697 5.07595 5.15769 5.20729 5.22741 5.29409 5.35446 5.39290 5.62812 5.66443 5.79411 6.32703 6.44791 6.46525 6.89205 7.13972 7.17196 7.92868 8.36762 9.24033 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.013930 B = 0.002271 C = 0.002184 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2009.569152 B =12327.493278 C =12819.302355 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.104 4.104 2 C 0.144 3.856 3 C -0.179 4.179 4 C -0.034 4.034 5 C -0.209 4.209 6 C 0.557 3.443 7 O -0.562 6.562 8 N -0.705 5.705 9 C 0.132 3.868 10 C 0.053 3.947 11 O -0.394 6.394 12 C 0.051 3.949 13 C 0.144 3.856 14 N -0.612 5.612 15 C 0.194 3.806 16 C -0.259 4.259 17 H 0.077 0.923 18 C -0.059 4.059 19 N -0.935 5.935 20 Si 0.963 3.037 21 H -0.289 1.289 22 H -0.301 1.301 23 H -0.265 1.265 24 C 0.205 3.795 25 C -0.122 4.122 26 C -0.148 4.148 27 C -0.158 4.158 28 N -0.505 5.505 29 H 0.096 0.904 30 H 0.074 0.926 31 H 0.102 0.898 32 H 0.179 0.821 33 H 0.163 0.837 34 H 0.412 0.588 35 H 0.044 0.956 36 H 0.094 0.906 37 H 0.056 0.944 38 H 0.082 0.918 39 H 0.021 0.979 40 H 0.073 0.927 41 H 0.074 0.926 42 H 0.063 0.937 43 H -0.002 1.002 44 H 0.005 0.995 45 H 0.023 0.977 46 H 0.244 0.756 47 H 0.121 0.879 48 H 0.105 0.895 49 H 0.110 0.890 50 H 0.100 0.900 51 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.687 -3.251 -15.630 26.131 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.006 3.994 3 C -0.198 4.198 4 C -0.060 4.060 5 C -0.215 4.215 6 C 0.345 3.655 7 O -0.443 6.443 8 N -0.357 5.357 9 C 0.008 3.992 10 C -0.023 4.023 11 O -0.313 6.313 12 C -0.028 4.028 13 C 0.018 3.982 14 N -0.335 5.335 15 C 0.049 3.951 16 C -0.389 4.389 17 H 0.095 0.905 18 C -0.254 4.254 19 N -0.582 5.582 20 Si 0.792 3.208 21 H -0.217 1.217 22 H -0.228 1.228 23 H -0.189 1.189 24 C 0.067 3.933 25 C -0.141 4.141 26 C -0.185 4.185 27 C -0.196 4.196 28 N -0.215 5.215 29 H 0.114 0.886 30 H 0.093 0.907 31 H 0.121 0.879 32 H 0.196 0.804 33 H 0.181 0.819 34 H 0.249 0.751 35 H 0.062 0.938 36 H 0.112 0.888 37 H 0.074 0.926 38 H 0.100 0.900 39 H 0.039 0.961 40 H 0.090 0.910 41 H 0.092 0.908 42 H 0.082 0.918 43 H 0.016 0.984 44 H 0.024 0.976 45 H 0.042 0.958 46 H 0.053 0.947 47 H 0.139 0.861 48 H 0.123 0.877 49 H 0.129 0.871 50 H 0.118 0.882 51 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -20.775 -4.913 -15.316 26.274 hybrid contribution 1.944 1.152 0.661 2.355 sum -18.831 -3.761 -14.655 24.156 Atomic orbital electron populations 1.20892 0.85904 1.04790 1.04504 1.22209 0.98950 0.87984 0.90243 1.22309 0.93997 1.00708 1.02782 1.22098 0.95635 0.96967 0.91292 1.20665 0.93479 0.95878 1.11438 1.18293 0.87080 0.83969 0.76160 1.90730 1.72996 1.29532 1.50993 1.45697 1.06966 1.09405 1.73662 1.21293 0.79432 0.96389 1.02078 1.22711 0.99490 0.90691 0.89458 1.87966 1.76768 1.24622 1.41992 1.23273 0.97134 0.82515 0.99890 1.21164 0.96658 0.95493 0.84883 1.44171 1.18982 1.38896 1.31471 1.20305 0.91183 0.89830 0.93801 1.19586 0.94995 0.99015 1.25328 0.90486 1.25665 1.00928 0.95340 1.03456 1.70335 1.42769 1.04271 1.40791 0.85322 0.78593 0.77620 0.79292 1.21667 1.22782 1.18945 1.20557 0.88867 0.93542 0.90364 1.21031 1.01108 0.88168 1.03747 1.23019 0.98205 0.96591 1.00695 1.22825 1.02570 1.02651 0.91535 1.67356 1.08325 1.30522 1.15268 0.88582 0.90712 0.87925 0.80403 0.81936 0.75078 0.93765 0.88809 0.92576 0.89972 0.96107 0.90955 0.90803 0.91843 0.98375 0.97599 0.95848 0.94726 0.86096 0.87705 0.87142 0.88190 0.89974 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.00 10.16 71.24 0.72 -0.27 16 2 C 0.14 2.49 6.78 42.57 0.29 2.78 16 3 C -0.18 -2.56 9.72 22.32 0.22 -2.35 16 4 C -0.03 -0.61 9.64 22.73 0.22 -0.39 16 5 C -0.21 -5.28 5.89 -19.99 -0.12 -5.40 16 6 C 0.56 16.33 7.74 86.78 0.67 17.00 16 7 O -0.56 -20.00 13.52 -3.89 -0.05 -20.05 16 8 N -0.70 -17.87 5.46 -465.98 -2.54 -20.41 16 9 C 0.13 3.68 6.06 86.38 0.52 4.21 16 10 C 0.05 1.42 6.07 71.98 0.44 1.86 16 11 O -0.39 -13.69 9.84 -148.98 -1.47 -15.16 16 12 C 0.05 1.69 6.28 71.98 0.45 2.14 16 13 C 0.14 5.40 6.11 86.38 0.53 5.92 16 14 N -0.61 -30.60 2.89 -726.94 -2.10 -32.70 16 15 C 0.19 10.09 8.64 127.77 1.10 11.19 16 16 C -0.26 -14.15 9.67 84.03 0.81 -13.34 16 17 H 0.08 4.00 7.89 -2.91 -0.02 3.97 16 18 C -0.06 -3.36 4.96 84.86 0.42 -2.94 16 19 N -0.93 -57.28 10.81 21.65 0.23 -57.05 16 20 Si 0.96 45.73 29.60 68.60 2.03 47.76 16 21 H -0.29 -13.66 7.11 99.48 0.71 -12.95 16 22 H -0.30 -14.55 7.11 99.48 0.71 -13.85 16 23 H -0.26 -11.75 7.11 99.48 0.71 -11.05 16 24 C 0.20 5.43 6.49 42.89 0.28 5.71 16 25 C -0.12 -3.27 4.43 -11.54 -0.05 -3.32 16 26 C -0.15 -3.20 10.02 30.60 0.31 -2.89 16 27 C -0.16 -3.97 10.23 30.60 0.31 -3.66 16 28 N -0.50 -11.83 9.21 -171.05 -1.58 -13.40 16 29 H 0.10 0.68 8.14 -2.39 -0.02 0.66 16 30 H 0.07 0.82 8.14 -2.39 -0.02 0.80 16 31 H 0.10 0.50 8.07 -2.39 -0.02 0.48 16 32 H 0.18 1.18 8.06 -2.91 -0.02 1.15 16 33 H 0.16 2.05 6.56 -2.91 -0.02 2.03 16 34 H 0.41 8.26 6.61 -92.71 -0.61 7.65 16 35 H 0.04 1.59 8.14 -2.39 -0.02 1.57 16 36 H 0.09 2.32 8.14 -2.38 -0.02 2.30 16 37 H 0.06 1.58 8.14 -2.39 -0.02 1.56 16 38 H 0.08 1.59 8.14 -2.39 -0.02 1.57 16 39 H 0.02 0.80 8.14 -2.39 -0.02 0.78 16 40 H 0.07 1.76 8.14 -2.39 -0.02 1.74 16 41 H 0.07 2.53 8.03 -2.39 -0.02 2.51 16 42 H 0.06 2.13 7.86 -2.39 -0.02 2.11 16 43 H 0.00 -0.12 7.44 -2.39 -0.02 -0.14 16 44 H 0.01 0.30 7.18 -2.39 -0.02 0.28 16 45 H 0.02 1.05 7.83 -2.39 -0.02 1.03 16 46 H 0.24 14.64 8.31 -92.71 -0.77 13.87 16 47 H 0.12 3.61 6.42 -2.39 -0.02 3.59 16 48 H 0.10 2.24 7.56 -2.39 -0.02 2.22 16 49 H 0.11 1.97 8.14 -2.39 -0.02 1.95 16 50 H 0.10 2.44 8.14 -2.39 -0.02 2.42 16 51 H 0.08 2.14 8.14 -2.39 -0.02 2.12 16 Total: -1.00 -76.34 418.93 1.97 -74.37 By element: Atomic # 1 Polarization: 20.07 SS G_CDS: 0.31 Total: 20.38 kcal Atomic # 6 Polarization: 9.13 SS G_CDS: 7.13 Total: 16.26 kcal Atomic # 7 Polarization: -117.58 SS G_CDS: -5.99 Total: -123.57 kcal Atomic # 8 Polarization: -33.69 SS G_CDS: -1.52 Total: -35.21 kcal Atomic # 14 Polarization: 45.73 SS G_CDS: 2.03 Total: 47.76 kcal Total: -76.34 1.97 -74.37 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001571342575.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.148 kcal (2) G-P(sol) polarization free energy of solvation -76.336 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.189 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.966 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.370 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.222 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds