Wall clock time and date at job start Wed Apr 1 2020 04:18:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38241 * 119.99393 * 2 1 4 4 C 1.38238 * 119.99720 * 180.02562 * 3 2 1 5 5 C 1.50700 * 120.00071 * 179.97438 * 4 3 2 6 6 C 1.38234 * 120.00071 * 359.95221 * 4 3 2 7 7 C 1.38235 * 119.99836 * 0.02562 * 6 4 3 8 8 C 1.50706 * 119.99802 * 179.97438 * 7 6 4 9 9 C 1.50699 * 109.46817 * 90.00175 * 8 7 6 10 10 O 1.21282 * 120.00041 * 0.02562 * 9 8 7 11 11 N 1.34779 * 120.00033 * 180.02562 * 9 8 7 12 12 C 1.46500 * 120.00165 * 179.97438 * 11 9 8 13 13 C 1.52996 * 109.47368 * 179.97438 * 12 11 9 14 14 H 1.09001 * 109.47165 * 295.00261 * 13 12 11 15 15 C 1.52999 * 109.47179 * 175.00014 * 13 12 11 16 16 N 1.46895 * 109.47014 * 54.99804 * 13 12 11 17 17 C 1.46900 * 111.00472 * 205.00180 * 16 13 12 18 18 C 1.50698 * 109.47453 * 180.02562 * 17 16 13 19 19 O 1.21286 * 119.99808 * 359.97438 * 18 17 16 20 20 N 1.34776 * 119.99951 * 180.02562 * 18 17 16 21 21 C 1.37101 * 120.00164 * 179.97438 * 20 18 17 22 22 H 1.07997 * 119.99776 * 359.97438 * 21 20 18 23 23 C 1.38944 * 120.00063 * 179.97438 * 21 20 18 24 24 N 1.31415 * 119.99985 * 180.02562 * 23 21 20 25 25 Si 1.86807 * 120.00040 * 359.97438 * 23 21 20 26 26 H 1.48497 * 109.46957 * 90.00108 * 25 23 21 27 27 H 1.48504 * 109.47020 * 209.99962 * 25 23 21 28 28 H 1.48496 * 109.47180 * 330.00051 * 25 23 21 29 29 C 1.38231 * 120.00255 * 0.25368 * 7 6 4 30 30 H 1.08992 * 109.46957 * 90.00627 * 1 2 3 31 31 H 1.08998 * 109.46755 * 210.00026 * 1 2 3 32 32 H 1.09000 * 109.47612 * 330.00023 * 1 2 3 33 33 H 1.08002 * 120.00430 * 359.97438 * 3 2 1 34 34 H 1.09002 * 109.46684 * 269.97802 * 5 4 3 35 35 H 1.09001 * 109.47196 * 29.97494 * 5 4 3 36 36 H 1.09001 * 109.47308 * 149.97934 * 5 4 3 37 37 H 1.07997 * 119.99984 * 179.97438 * 6 4 3 38 38 H 1.09000 * 109.47318 * 209.99554 * 8 7 6 39 39 H 1.09000 * 109.47161 * 330.00185 * 8 7 6 40 40 H 0.96996 * 119.99850 * 359.97438 * 11 9 8 41 41 H 1.08996 * 109.47197 * 300.00087 * 12 11 9 42 42 H 1.09004 * 109.46923 * 59.99390 * 12 11 9 43 43 H 1.08997 * 109.46828 * 299.99992 * 15 13 12 44 44 H 1.09000 * 109.47001 * 60.00560 * 15 13 12 45 45 H 1.09002 * 109.46911 * 180.02562 * 15 13 12 46 46 H 1.00900 * 111.00328 * 81.04854 * 16 13 12 47 47 H 1.09003 * 109.46646 * 300.00591 * 17 16 13 48 48 H 1.09001 * 109.46987 * 60.00099 * 17 16 13 49 49 H 0.97003 * 120.00259 * 359.97438 * 20 18 17 50 50 H 0.97003 * 119.99596 * 180.02562 * 24 23 21 51 51 H 1.07997 * 120.00101 * 179.72736 * 29 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1981 1.1973 0.0000 4 6 3.5804 1.1974 -0.0005 5 6 4.3339 2.5025 -0.0011 6 6 4.2717 0.0003 -0.0001 7 6 3.5806 -1.1969 0.0004 8 6 4.3342 -2.5020 0.0003 9 6 4.5859 -2.9368 1.4211 10 8 4.1917 -2.2543 2.3430 11 7 5.2490 -4.0840 1.6674 12 6 5.4942 -4.5063 3.0486 13 6 6.2592 -5.8313 3.0486 14 1 5.6340 -6.6118 2.6151 15 6 6.6241 -6.2095 4.4855 16 7 7.4859 -5.6885 2.2533 17 6 7.9296 -6.9881 1.7316 18 6 9.1878 -6.8020 0.9235 19 8 9.6675 -5.6956 0.7943 20 7 9.7795 -7.8650 0.3434 21 6 10.9239 -7.6957 -0.3923 22 1 11.3511 -6.7105 -0.5074 23 6 11.5341 -8.7916 -0.9899 24 7 12.6314 -8.6294 -1.6947 25 14 10.7956 -10.4959 -0.7904 26 1 9.8293 -10.7484 -1.8894 27 1 11.8768 -11.5127 -0.8386 28 1 10.0935 -10.5813 0.5153 29 6 2.1983 -1.1970 -0.0049 30 1 -0.3633 -0.0001 -1.0276 31 1 -0.3633 -0.8900 0.5138 32 1 -0.3634 0.8900 0.5138 33 1 1.6580 2.1326 -0.0004 34 1 4.5155 2.8167 -1.0290 35 1 3.7448 3.2624 0.5124 36 1 5.2864 2.3724 0.5127 37 1 5.3517 0.0003 -0.0009 38 1 3.7450 -3.2618 -0.5131 39 1 5.2864 -2.3717 -0.5139 40 1 5.5640 -4.6299 0.9301 41 1 6.0833 -3.7463 3.5618 42 1 4.5421 -4.6368 3.5631 43 1 7.2493 -5.4290 4.9190 44 1 5.7138 -6.3156 5.0756 45 1 7.1695 -7.1533 4.4855 46 1 8.2162 -5.2464 2.7912 47 1 8.1287 -7.6644 2.5630 48 1 7.1496 -7.4107 1.0982 49 1 9.3956 -8.7499 0.4463 50 1 13.0571 -9.3945 -2.1122 51 1 1.6584 -2.1324 -0.0090 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001662325722.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:18:16 Heat of formation + Delta-G solvation = -62.566021 kcal Electronic energy + Delta-G solvation = -29298.501771 eV Core-core repulsion = 25196.941925 eV Total energy + Delta-G solvation = -4101.559846 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.34 seconds Orbital eigenvalues (eV) -40.19937 -39.19304 -38.58614 -37.02878 -34.19751 -33.78280 -33.66606 -33.61703 -31.73799 -30.93447 -28.83122 -27.34473 -26.83690 -26.61719 -25.76935 -23.77130 -21.54281 -21.07530 -20.88151 -19.92856 -19.44869 -18.43634 -17.04422 -16.52092 -16.32180 -16.18550 -15.92039 -15.45982 -15.21136 -14.89758 -14.57193 -14.46258 -14.26410 -13.96558 -13.57312 -13.41825 -13.31934 -13.13349 -13.10417 -13.04339 -12.87012 -12.73885 -12.69577 -12.43821 -12.29577 -12.17911 -11.84575 -11.78563 -11.61993 -11.56524 -11.21177 -11.15347 -11.10954 -11.06462 -10.64181 -10.02122 -9.87464 -9.62175 -8.97604 -8.71561 -8.66840 -8.63754 -8.27338 -8.21707 -6.35465 -3.87222 1.23168 1.28238 2.69977 2.97937 3.02578 3.11346 3.19880 3.67842 3.68858 3.98887 4.06179 4.48018 4.59795 4.63308 4.68400 4.75688 4.88534 4.99058 5.01334 5.10087 5.11640 5.12960 5.17645 5.17851 5.34761 5.39497 5.41067 5.42540 5.44877 5.45079 5.50573 5.55672 5.63633 5.65630 5.68907 5.74735 5.83627 5.88153 5.96907 6.01731 6.06132 6.41495 6.42971 6.49516 6.52714 6.92290 6.97722 7.45576 7.53193 7.61370 8.09671 8.30125 8.54637 8.90351 9.37539 9.77179 10.77536 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.013457 B = 0.001865 C = 0.001761 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2080.146576 B =15013.252035 C =15899.540879 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.085 4.085 3 C -0.124 4.124 4 C -0.083 4.083 5 C -0.114 4.114 6 C -0.110 4.110 7 C -0.053 4.053 8 C -0.105 4.105 9 C 0.514 3.486 10 O -0.543 6.543 11 N -0.714 5.714 12 C 0.135 3.865 13 C 0.068 3.932 14 H 0.084 0.916 15 C -0.181 4.181 16 N -0.663 5.663 17 C 0.047 3.953 18 C 0.448 3.552 19 O -0.564 6.564 20 N -0.590 5.590 21 C -0.306 4.306 22 H 0.120 0.880 23 C 0.041 3.959 24 N -0.880 5.880 25 Si 0.880 3.120 26 H -0.270 1.270 27 H -0.277 1.277 28 H -0.270 1.270 29 C -0.112 4.112 30 H 0.068 0.932 31 H 0.065 0.935 32 H 0.064 0.936 33 H 0.118 0.882 34 H 0.069 0.931 35 H 0.064 0.936 36 H 0.067 0.933 37 H 0.120 0.880 38 H 0.101 0.899 39 H 0.106 0.894 40 H 0.409 0.591 41 H 0.066 0.934 42 H 0.067 0.933 43 H 0.062 0.938 44 H 0.063 0.937 45 H 0.061 0.939 46 H 0.355 0.645 47 H 0.046 0.954 48 H 0.087 0.913 49 H 0.370 0.630 50 H 0.274 0.726 51 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.139 10.756 5.784 26.164 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.085 4.085 3 C -0.142 4.142 4 C -0.083 4.083 5 C -0.170 4.170 6 C -0.128 4.128 7 C -0.053 4.053 8 C -0.145 4.145 9 C 0.300 3.700 10 O -0.420 6.420 11 N -0.366 5.366 12 C 0.010 3.990 13 C -0.042 4.042 14 H 0.102 0.898 15 C -0.241 4.241 16 N -0.296 5.296 17 C -0.086 4.086 18 C 0.234 3.766 19 O -0.446 6.446 20 N -0.229 5.229 21 C -0.434 4.434 22 H 0.137 0.863 23 C -0.162 4.162 24 N -0.520 5.520 25 Si 0.707 3.293 26 H -0.196 1.196 27 H -0.202 1.202 28 H -0.196 1.196 29 C -0.130 4.130 30 H 0.087 0.913 31 H 0.084 0.916 32 H 0.083 0.917 33 H 0.136 0.864 34 H 0.088 0.912 35 H 0.083 0.917 36 H 0.086 0.914 37 H 0.138 0.862 38 H 0.120 0.880 39 H 0.124 0.876 40 H 0.245 0.755 41 H 0.084 0.916 42 H 0.085 0.915 43 H 0.081 0.919 44 H 0.082 0.918 45 H 0.080 0.920 46 H 0.175 0.825 47 H 0.064 0.936 48 H 0.105 0.895 49 H 0.203 0.797 50 H 0.084 0.916 51 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -23.227 12.073 5.653 26.781 hybrid contribution 0.224 -2.335 0.554 2.411 sum -23.003 9.737 6.207 25.739 Atomic orbital electron populations 1.20765 0.91342 1.02681 1.02111 1.19813 0.95861 0.93064 0.99759 1.20850 0.93500 0.97364 1.02497 1.19842 0.93787 0.95205 0.99436 1.20785 1.00018 0.94020 1.02223 1.20871 0.99684 0.91431 1.00773 1.19240 0.93421 0.93608 0.99070 1.20690 1.02578 0.96082 0.95151 1.20457 0.77781 0.80715 0.91087 1.90708 1.51321 1.53717 1.46260 1.45811 1.57379 1.24084 1.09309 1.21289 0.98859 0.95465 0.83358 1.21857 0.92902 0.96821 0.92670 0.89817 1.22439 1.02321 1.02249 0.97070 1.60172 1.07060 1.21362 1.41031 1.21755 0.97395 0.91111 0.98331 1.19698 0.86667 0.85426 0.84831 1.90576 1.65935 1.24343 1.63736 1.42212 1.25492 1.07694 1.47522 1.19424 1.00089 0.98153 1.25771 0.86283 1.25050 0.96084 0.98260 0.96788 1.69625 1.18142 1.31517 1.32709 0.86667 0.79578 0.84513 0.78566 1.19586 1.20183 1.19578 1.20794 0.93340 0.97480 1.01391 0.91311 0.91628 0.91688 0.86413 0.91219 0.91692 0.91443 0.86167 0.88041 0.87552 0.75481 0.91615 0.91522 0.91894 0.91808 0.92005 0.82471 0.93616 0.89501 0.79720 0.91579 0.86450 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.82 10.01 36.01 0.36 -0.46 16 2 C -0.08 -0.86 5.88 -104.62 -0.62 -1.48 16 3 C -0.12 -1.25 9.36 -39.58 -0.37 -1.62 16 4 C -0.08 -0.88 5.88 -104.62 -0.62 -1.50 16 5 C -0.11 -0.93 10.01 36.01 0.36 -0.57 16 6 C -0.11 -1.28 9.36 -39.58 -0.37 -1.65 16 7 C -0.05 -0.61 4.37 -104.62 -0.46 -1.07 16 8 C -0.11 -1.07 5.83 -29.03 -0.17 -1.24 16 9 C 0.51 6.55 7.82 -10.99 -0.09 6.46 16 10 O -0.54 -8.92 16.03 5.56 0.09 -8.83 16 11 N -0.71 -8.11 5.39 -60.30 -0.32 -8.43 16 12 C 0.13 1.47 5.37 -4.04 -0.02 1.45 16 13 C 0.07 0.68 2.75 -67.72 -0.19 0.50 16 14 H 0.08 0.76 7.80 -51.93 -0.40 0.35 16 15 C -0.18 -1.60 9.16 37.16 0.34 -1.26 16 16 N -0.66 -8.87 5.31 -108.00 -0.57 -9.44 16 17 C 0.05 0.69 5.97 -4.98 -0.03 0.66 16 18 C 0.45 9.55 7.82 -10.99 -0.09 9.46 16 19 O -0.56 -14.45 15.78 5.55 0.09 -14.36 16 20 N -0.59 -13.43 5.09 -10.97 -0.06 -13.49 16 21 C -0.31 -8.42 10.16 -14.93 -0.15 -8.57 16 22 H 0.12 3.77 7.39 -52.49 -0.39 3.39 16 23 C 0.04 1.11 5.50 -17.47 -0.10 1.01 16 24 N -0.88 -25.28 13.96 55.50 0.77 -24.51 16 25 Si 0.88 18.84 27.74 -169.99 -4.71 14.13 16 26 H -0.27 -5.67 7.11 56.52 0.40 -5.27 16 27 H -0.28 -5.97 7.11 56.52 0.40 -5.57 16 28 H -0.27 -5.24 6.52 56.52 0.37 -4.87 16 29 C -0.11 -1.22 9.36 -39.59 -0.37 -1.59 16 30 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 31 H 0.06 0.45 8.09 -51.93 -0.42 0.03 16 32 H 0.06 0.42 8.09 -51.93 -0.42 0.00 16 33 H 0.12 0.94 8.06 -52.49 -0.42 0.52 16 34 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 35 H 0.06 0.46 8.09 -51.93 -0.42 0.04 16 36 H 0.07 0.54 8.09 -51.93 -0.42 0.12 16 37 H 0.12 1.31 8.06 -52.49 -0.42 0.89 16 38 H 0.10 0.79 8.08 -51.93 -0.42 0.38 16 39 H 0.11 0.99 8.09 -51.93 -0.42 0.57 16 40 H 0.41 4.36 8.14 -40.82 -0.33 4.03 16 41 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 42 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 43 H 0.06 0.57 8.13 -51.93 -0.42 0.15 16 44 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 45 H 0.06 0.56 7.45 -51.93 -0.39 0.17 16 46 H 0.35 5.23 8.17 -39.29 -0.32 4.91 16 47 H 0.05 0.59 7.44 -51.93 -0.39 0.21 16 48 H 0.09 1.10 8.06 -51.93 -0.42 0.68 16 49 H 0.37 7.37 5.76 -40.82 -0.24 7.13 16 50 H 0.27 7.26 8.31 -40.82 -0.34 6.92 16 51 H 0.12 1.10 8.06 -52.49 -0.42 0.68 16 LS Contribution 424.68 15.07 6.40 6.40 Total: -1.00 -34.52 424.68 -9.25 -43.76 By element: Atomic # 1 Polarization: 24.61 SS G_CDS: -8.36 Total: 16.24 kcal Atomic # 6 Polarization: 1.10 SS G_CDS: -2.56 Total: -1.47 kcal Atomic # 7 Polarization: -55.70 SS G_CDS: -0.18 Total: -55.88 kcal Atomic # 8 Polarization: -23.37 SS G_CDS: 0.18 Total: -23.19 kcal Atomic # 14 Polarization: 18.84 SS G_CDS: -4.71 Total: 14.13 kcal Total LS contribution 6.40 Total: 6.40 kcal Total: -34.52 -9.25 -43.76 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001662325722.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.803 kcal (2) G-P(sol) polarization free energy of solvation -34.516 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.319 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.247 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.763 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.566 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.34 seconds