Wall clock time and date at job start Wed Apr 1 2020 04:18:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38241 * 119.99393 * 2 1 4 4 C 1.38238 * 119.99720 * 180.02562 * 3 2 1 5 5 C 1.50700 * 120.00071 * 179.97438 * 4 3 2 6 6 C 1.38234 * 120.00071 * 359.95221 * 4 3 2 7 7 C 1.38235 * 119.99836 * 0.02562 * 6 4 3 8 8 C 1.50706 * 119.99802 * 179.97438 * 7 6 4 9 9 C 1.50699 * 109.46817 * 90.00175 * 8 7 6 10 10 O 1.21282 * 120.00041 * 0.02562 * 9 8 7 11 11 N 1.34779 * 120.00033 * 180.02562 * 9 8 7 12 12 C 1.46500 * 120.00165 * 179.97438 * 11 9 8 13 13 C 1.52996 * 109.47368 * 179.97438 * 12 11 9 14 14 H 1.09001 * 109.47165 * 295.00261 * 13 12 11 15 15 C 1.52999 * 109.47179 * 175.00014 * 13 12 11 16 16 N 1.46895 * 109.47014 * 54.99804 * 13 12 11 17 17 C 1.46900 * 111.00472 * 205.00180 * 16 13 12 18 18 C 1.50698 * 109.47453 * 180.02562 * 17 16 13 19 19 O 1.21286 * 119.99808 * 359.97438 * 18 17 16 20 20 N 1.34776 * 119.99951 * 180.02562 * 18 17 16 21 21 C 1.37101 * 120.00164 * 179.97438 * 20 18 17 22 22 H 1.07997 * 119.99776 * 359.97438 * 21 20 18 23 23 C 1.38944 * 120.00063 * 179.97438 * 21 20 18 24 24 N 1.31415 * 119.99985 * 180.02562 * 23 21 20 25 25 Si 1.86807 * 120.00040 * 359.97438 * 23 21 20 26 26 H 1.48497 * 109.46957 * 90.00108 * 25 23 21 27 27 H 1.48504 * 109.47020 * 209.99962 * 25 23 21 28 28 H 1.48496 * 109.47180 * 330.00051 * 25 23 21 29 29 C 1.38231 * 120.00255 * 0.25368 * 7 6 4 30 30 H 1.08992 * 109.46957 * 90.00627 * 1 2 3 31 31 H 1.08998 * 109.46755 * 210.00026 * 1 2 3 32 32 H 1.09000 * 109.47612 * 330.00023 * 1 2 3 33 33 H 1.08002 * 120.00430 * 359.97438 * 3 2 1 34 34 H 1.09002 * 109.46684 * 269.97802 * 5 4 3 35 35 H 1.09001 * 109.47196 * 29.97494 * 5 4 3 36 36 H 1.09001 * 109.47308 * 149.97934 * 5 4 3 37 37 H 1.07997 * 119.99984 * 179.97438 * 6 4 3 38 38 H 1.09000 * 109.47318 * 209.99554 * 8 7 6 39 39 H 1.09000 * 109.47161 * 330.00185 * 8 7 6 40 40 H 0.96996 * 119.99850 * 359.97438 * 11 9 8 41 41 H 1.08996 * 109.47197 * 300.00087 * 12 11 9 42 42 H 1.09004 * 109.46923 * 59.99390 * 12 11 9 43 43 H 1.08997 * 109.46828 * 299.99992 * 15 13 12 44 44 H 1.09000 * 109.47001 * 60.00560 * 15 13 12 45 45 H 1.09002 * 109.46911 * 180.02562 * 15 13 12 46 46 H 1.00900 * 111.00328 * 81.04854 * 16 13 12 47 47 H 1.09003 * 109.46646 * 300.00591 * 17 16 13 48 48 H 1.09001 * 109.46987 * 60.00099 * 17 16 13 49 49 H 0.97003 * 120.00259 * 359.97438 * 20 18 17 50 50 H 0.97003 * 119.99596 * 180.02562 * 24 23 21 51 51 H 1.07997 * 120.00101 * 179.72736 * 29 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1981 1.1973 0.0000 4 6 3.5804 1.1974 -0.0005 5 6 4.3339 2.5025 -0.0011 6 6 4.2717 0.0003 -0.0001 7 6 3.5806 -1.1969 0.0004 8 6 4.3342 -2.5020 0.0003 9 6 4.5859 -2.9368 1.4211 10 8 4.1917 -2.2543 2.3430 11 7 5.2490 -4.0840 1.6674 12 6 5.4942 -4.5063 3.0486 13 6 6.2592 -5.8313 3.0486 14 1 5.6340 -6.6118 2.6151 15 6 6.6241 -6.2095 4.4855 16 7 7.4859 -5.6885 2.2533 17 6 7.9296 -6.9881 1.7316 18 6 9.1878 -6.8020 0.9235 19 8 9.6675 -5.6956 0.7943 20 7 9.7795 -7.8650 0.3434 21 6 10.9239 -7.6957 -0.3923 22 1 11.3511 -6.7105 -0.5074 23 6 11.5341 -8.7916 -0.9899 24 7 12.6314 -8.6294 -1.6947 25 14 10.7956 -10.4959 -0.7904 26 1 9.8293 -10.7484 -1.8894 27 1 11.8768 -11.5127 -0.8386 28 1 10.0935 -10.5813 0.5153 29 6 2.1983 -1.1970 -0.0049 30 1 -0.3633 -0.0001 -1.0276 31 1 -0.3633 -0.8900 0.5138 32 1 -0.3634 0.8900 0.5138 33 1 1.6580 2.1326 -0.0004 34 1 4.5155 2.8167 -1.0290 35 1 3.7448 3.2624 0.5124 36 1 5.2864 2.3724 0.5127 37 1 5.3517 0.0003 -0.0009 38 1 3.7450 -3.2618 -0.5131 39 1 5.2864 -2.3717 -0.5139 40 1 5.5640 -4.6299 0.9301 41 1 6.0833 -3.7463 3.5618 42 1 4.5421 -4.6368 3.5631 43 1 7.2493 -5.4290 4.9190 44 1 5.7138 -6.3156 5.0756 45 1 7.1695 -7.1533 4.4855 46 1 8.2162 -5.2464 2.7912 47 1 8.1287 -7.6644 2.5630 48 1 7.1496 -7.4107 1.0982 49 1 9.3956 -8.7499 0.4463 50 1 13.0571 -9.3945 -2.1122 51 1 1.6584 -2.1324 -0.0090 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001662325722.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:18:12 Heat of formation + Delta-G solvation = -87.577703 kcal Electronic energy + Delta-G solvation = -29299.586359 eV Core-core repulsion = 25196.941925 eV Total energy + Delta-G solvation = -4102.644434 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 3.34 seconds Orbital eigenvalues (eV) -41.09436 -40.36012 -39.93926 -38.13438 -35.99548 -34.96908 -34.43356 -34.36956 -33.72699 -31.98567 -29.60680 -28.07636 -28.04070 -27.55467 -26.68994 -25.39444 -22.38057 -21.97117 -21.61772 -21.26940 -20.81873 -20.27163 -18.10376 -17.66126 -17.33827 -17.15362 -16.94257 -16.68354 -16.51550 -16.33117 -15.69483 -15.38760 -15.19851 -15.02634 -14.84871 -14.57417 -14.47017 -14.14556 -14.00188 -13.92536 -13.85727 -13.77887 -13.57023 -13.43543 -13.34406 -13.11546 -13.07119 -12.78320 -12.55972 -12.48297 -12.39414 -12.34286 -11.97497 -11.90871 -11.85843 -11.84810 -11.49040 -10.91680 -10.41329 -10.22642 -9.95560 -9.50682 -9.41787 -9.33617 -8.39570 -6.00408 0.42856 0.48521 1.31366 1.37365 1.46015 1.71183 1.99366 2.24564 2.31937 2.72682 2.89009 3.17147 3.41863 3.68460 3.86524 3.87560 3.95029 4.03385 4.14363 4.23584 4.24162 4.34559 4.37147 4.45079 4.47740 4.53007 4.59410 4.62437 4.67008 4.70875 4.71511 4.79749 4.81358 4.85566 4.89921 4.99956 5.00788 5.06851 5.26594 5.28911 5.36842 5.54246 5.56579 5.63228 5.65591 5.73615 5.92512 6.05919 6.16470 6.34399 6.61637 6.67623 6.90805 7.34483 7.42707 7.99925 8.78078 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.013457 B = 0.001865 C = 0.001761 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2080.146576 B =15013.252035 C =15899.540879 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.093 4.093 3 C -0.135 4.135 4 C -0.094 4.094 5 C -0.112 4.112 6 C -0.136 4.136 7 C -0.068 4.068 8 C -0.101 4.101 9 C 0.512 3.488 10 O -0.584 6.584 11 N -0.707 5.707 12 C 0.135 3.865 13 C 0.079 3.921 14 H 0.107 0.893 15 C -0.178 4.178 16 N -0.678 5.678 17 C 0.063 3.937 18 C 0.448 3.552 19 O -0.614 6.614 20 N -0.591 5.591 21 C -0.327 4.327 22 H 0.054 0.946 23 C -0.018 4.018 24 N -0.936 5.936 25 Si 0.966 3.034 26 H -0.256 1.256 27 H -0.279 1.279 28 H -0.229 1.229 29 C -0.128 4.128 30 H 0.081 0.919 31 H 0.069 0.931 32 H 0.074 0.926 33 H 0.138 0.862 34 H 0.080 0.920 35 H 0.077 0.923 36 H 0.063 0.937 37 H 0.116 0.884 38 H 0.128 0.872 39 H 0.112 0.888 40 H 0.415 0.585 41 H 0.046 0.954 42 H 0.075 0.925 43 H 0.053 0.947 44 H 0.080 0.920 45 H 0.066 0.934 46 H 0.344 0.656 47 H 0.077 0.923 48 H 0.121 0.879 49 H 0.390 0.610 50 H 0.278 0.722 51 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.428 8.383 6.680 28.519 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.093 4.093 3 C -0.153 4.153 4 C -0.094 4.094 5 C -0.169 4.169 6 C -0.154 4.154 7 C -0.069 4.069 8 C -0.140 4.140 9 C 0.299 3.701 10 O -0.465 6.465 11 N -0.358 5.358 12 C 0.010 3.990 13 C -0.031 4.031 14 H 0.125 0.875 15 C -0.237 4.237 16 N -0.310 5.310 17 C -0.069 4.069 18 C 0.236 3.764 19 O -0.499 6.499 20 N -0.233 5.233 21 C -0.456 4.456 22 H 0.072 0.928 23 C -0.216 4.216 24 N -0.577 5.577 25 Si 0.786 3.214 26 H -0.181 1.181 27 H -0.204 1.204 28 H -0.153 1.153 29 C -0.146 4.146 30 H 0.100 0.900 31 H 0.088 0.912 32 H 0.093 0.907 33 H 0.156 0.844 34 H 0.099 0.901 35 H 0.096 0.904 36 H 0.082 0.918 37 H 0.134 0.866 38 H 0.146 0.854 39 H 0.130 0.870 40 H 0.251 0.749 41 H 0.064 0.936 42 H 0.094 0.906 43 H 0.072 0.928 44 H 0.099 0.901 45 H 0.085 0.915 46 H 0.163 0.837 47 H 0.095 0.905 48 H 0.139 0.861 49 H 0.225 0.775 50 H 0.088 0.912 51 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -26.541 9.683 6.560 29.004 hybrid contribution 1.271 -1.421 0.289 1.929 sum -25.270 8.261 6.850 27.454 Atomic orbital electron populations 1.20807 0.89317 1.03401 1.03137 1.20224 0.97497 0.92855 0.98679 1.21163 0.93451 0.98374 1.02280 1.20183 0.94496 0.95796 0.98943 1.20816 0.99754 0.93270 1.03038 1.21046 0.99763 0.92331 1.02252 1.19471 0.94068 0.94017 0.99294 1.20717 1.03210 0.96348 0.93737 1.20870 0.77127 0.80485 0.91638 1.90683 1.53202 1.54967 1.47658 1.45821 1.56555 1.23687 1.09766 1.21327 0.99100 0.95520 0.83015 1.21856 0.91302 0.96694 0.93233 0.87534 1.22399 1.03048 1.02051 0.96206 1.60146 1.07751 1.20952 1.42135 1.21686 0.94273 0.92345 0.98645 1.21055 0.87759 0.84099 0.83448 1.90561 1.67721 1.26515 1.65078 1.42034 1.24457 1.09204 1.47640 1.18985 1.02432 0.96057 1.28130 0.92805 1.26143 0.96161 1.03810 0.95496 1.69817 1.20273 1.33514 1.34083 0.85351 0.78925 0.76316 0.80812 1.18083 1.20394 1.15253 1.21049 0.93282 0.98471 1.01791 0.90021 0.91212 0.90679 0.84421 0.90142 0.90408 0.91844 0.86617 0.85448 0.87033 0.74864 0.93599 0.90638 0.92770 0.90093 0.91527 0.83668 0.90542 0.86103 0.77463 0.91244 0.85249 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.42 10.01 71.24 0.71 -0.71 16 2 C -0.09 -1.80 5.88 -19.87 -0.12 -1.92 16 3 C -0.13 -2.63 9.36 22.27 0.21 -2.42 16 4 C -0.09 -2.02 5.88 -19.87 -0.12 -2.14 16 5 C -0.11 -1.80 10.01 71.24 0.71 -1.09 16 6 C -0.14 -3.29 9.36 22.27 0.21 -3.08 16 7 C -0.07 -1.59 4.37 -19.86 -0.09 -1.67 16 8 C -0.10 -2.01 5.83 29.10 0.17 -1.84 16 9 C 0.51 12.92 7.82 87.66 0.69 13.61 16 10 O -0.58 -19.51 16.03 -3.04 -0.05 -19.56 16 11 N -0.71 -15.25 5.39 -463.06 -2.50 -17.75 16 12 C 0.14 2.75 5.37 86.38 0.46 3.22 16 13 C 0.08 1.34 2.75 44.91 0.12 1.46 16 14 H 0.11 1.41 7.80 -2.39 -0.02 1.39 16 15 C -0.18 -2.59 9.16 71.98 0.66 -1.93 16 16 N -0.68 -16.71 5.31 -495.59 -2.63 -19.34 16 17 C 0.06 1.61 5.97 85.56 0.51 2.12 16 18 C 0.45 18.76 7.82 87.66 0.69 19.45 16 19 O -0.61 -32.45 15.78 -3.05 -0.05 -32.50 16 20 N -0.59 -26.38 5.09 -307.00 -1.56 -27.95 16 21 C -0.33 -18.63 10.16 84.04 0.85 -17.78 16 22 H 0.05 3.69 7.39 -2.91 -0.02 3.67 16 23 C -0.02 -0.96 5.50 84.92 0.47 -0.50 16 24 N -0.94 -55.76 13.96 21.66 0.30 -55.46 16 25 Si 0.97 37.50 27.74 68.60 1.90 39.40 16 26 H -0.26 -9.40 7.11 99.48 0.71 -8.69 16 27 H -0.28 -10.89 7.11 99.48 0.71 -10.19 16 28 H -0.23 -7.33 6.52 99.48 0.65 -6.68 16 29 C -0.13 -2.73 9.36 22.27 0.21 -2.53 16 30 H 0.08 0.85 8.14 -2.39 -0.02 0.83 16 31 H 0.07 0.84 8.09 -2.39 -0.02 0.82 16 32 H 0.07 0.81 8.09 -2.39 -0.02 0.79 16 33 H 0.14 2.01 8.06 -2.91 -0.02 1.98 16 34 H 0.08 1.10 8.14 -2.39 -0.02 1.08 16 35 H 0.08 1.02 8.09 -2.39 -0.02 1.00 16 36 H 0.06 1.05 8.09 -2.39 -0.02 1.03 16 37 H 0.12 2.73 8.06 -2.91 -0.02 2.71 16 38 H 0.13 1.80 8.08 -2.39 -0.02 1.79 16 39 H 0.11 2.07 8.09 -2.39 -0.02 2.06 16 40 H 0.41 8.09 8.14 -92.71 -0.75 7.34 16 41 H 0.05 1.13 8.14 -2.39 -0.02 1.11 16 42 H 0.08 1.44 8.14 -2.39 -0.02 1.42 16 43 H 0.05 0.89 8.13 -2.39 -0.02 0.87 16 44 H 0.08 0.93 8.14 -2.39 -0.02 0.91 16 45 H 0.07 0.94 7.45 -2.39 -0.02 0.92 16 46 H 0.34 9.88 8.17 -89.69 -0.73 9.15 16 47 H 0.08 1.59 7.44 -2.39 -0.02 1.58 16 48 H 0.12 2.40 8.06 -2.39 -0.02 2.39 16 49 H 0.39 14.16 5.76 -92.71 -0.53 13.63 16 50 H 0.28 15.16 8.31 -92.71 -0.77 14.39 16 51 H 0.13 2.30 8.06 -2.91 -0.02 2.28 16 Total: -1.00 -81.97 424.68 0.64 -81.33 By element: Atomic # 1 Polarization: 50.69 SS G_CDS: -1.13 Total: 49.57 kcal Atomic # 6 Polarization: -4.09 SS G_CDS: 6.35 Total: 2.26 kcal Atomic # 7 Polarization: -114.11 SS G_CDS: -6.39 Total: -120.50 kcal Atomic # 8 Polarization: -51.96 SS G_CDS: -0.10 Total: -52.06 kcal Atomic # 14 Polarization: 37.50 SS G_CDS: 1.90 Total: 39.40 kcal Total: -81.97 0.64 -81.33 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001662325722.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.248 kcal (2) G-P(sol) polarization free energy of solvation -81.969 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.217 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.639 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.330 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.578 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.34 seconds