Wall clock time and date at job start Wed Apr 1 2020 04:18:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38234 * 119.99503 * 2 1 4 4 C 1.38231 * 119.99892 * 180.02562 * 3 2 1 5 5 C 1.50706 * 120.00319 * 180.02562 * 4 3 2 6 6 C 1.38243 * 120.00070 * 359.90902 * 4 3 2 7 7 C 1.38235 * 119.99602 * 0.07188 * 6 4 3 8 8 C 1.50701 * 119.99808 * 179.97438 * 7 6 4 9 9 C 1.50701 * 109.47148 * 89.99755 * 8 7 6 10 10 O 1.21286 * 119.99909 * 0.02562 * 9 8 7 11 11 N 1.34774 * 120.00373 * 179.97438 * 9 8 7 12 12 C 1.46492 * 120.00345 * 180.02562 * 11 9 8 13 13 C 1.53001 * 109.47251 * 180.02562 * 12 11 9 14 14 N 1.46906 * 109.47194 * 180.02562 * 13 12 11 15 15 C 1.46901 * 110.99989 * 66.03900 * 14 13 12 16 16 C 1.46894 * 111.00064 * 189.99966 * 14 13 12 17 17 C 1.50702 * 109.47214 * 169.99886 * 16 14 13 18 18 O 1.21286 * 119.99968 * 359.97438 * 17 16 14 19 19 N 1.34777 * 119.99601 * 180.02562 * 17 16 14 20 20 C 1.37099 * 119.99635 * 180.02562 * 19 17 16 21 21 H 1.08006 * 119.99501 * 359.97438 * 20 19 17 22 22 C 1.38950 * 120.00223 * 179.97438 * 20 19 17 23 23 N 1.31411 * 119.99556 * 0.02562 * 22 20 19 24 24 Si 1.86792 * 120.00033 * 179.97438 * 22 20 19 25 25 H 1.48504 * 109.46833 * 90.00529 * 24 22 20 26 26 H 1.48504 * 109.47442 * 210.00081 * 24 22 20 27 27 H 1.48501 * 109.47782 * 330.00385 * 24 22 20 28 28 C 1.38230 * 120.00326 * 359.97438 * 7 6 4 29 29 H 1.08999 * 109.46630 * 269.97351 * 1 2 3 30 30 H 1.08992 * 109.47454 * 29.97431 * 1 2 3 31 31 H 1.08996 * 109.46937 * 149.97950 * 1 2 3 32 32 H 1.07997 * 120.00455 * 0.02562 * 3 2 1 33 33 H 1.09001 * 109.47060 * 269.91029 * 5 4 3 34 34 H 1.08998 * 109.46941 * 29.90973 * 5 4 3 35 35 H 1.08998 * 109.47482 * 149.91122 * 5 4 3 36 36 H 1.08000 * 119.99728 * 180.34119 * 6 4 3 37 37 H 1.08993 * 109.47341 * 210.00461 * 8 7 6 38 38 H 1.09001 * 109.46864 * 330.00546 * 8 7 6 39 39 H 0.97000 * 119.99770 * 0.02562 * 11 9 8 40 40 H 1.09003 * 109.47200 * 300.00077 * 12 11 9 41 41 H 1.09001 * 109.47323 * 60.00059 * 12 11 9 42 42 H 1.08998 * 109.46716 * 299.99389 * 13 12 11 43 43 H 1.08996 * 109.47443 * 60.00011 * 13 12 11 44 44 H 1.09004 * 109.47151 * 60.00458 * 15 14 13 45 45 H 1.08995 * 109.47132 * 179.97438 * 15 14 13 46 46 H 1.09000 * 109.47742 * 300.00230 * 15 14 13 47 47 H 1.09008 * 109.47022 * 289.99722 * 16 14 13 48 48 H 1.09000 * 109.47242 * 49.99245 * 16 14 13 49 49 H 0.96997 * 120.00261 * 359.97438 * 19 17 16 50 50 H 0.96999 * 119.99628 * 179.97438 * 23 22 20 51 51 H 1.08001 * 120.00371 * 179.97438 * 28 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1981 1.1972 0.0000 4 6 3.5804 1.1973 -0.0005 5 6 4.3339 2.5025 0.0000 6 6 4.2717 0.0001 0.0008 7 6 3.5806 -1.1970 0.0012 8 6 4.3341 -2.5021 0.0021 9 6 4.5849 -2.9364 1.4233 10 8 4.1902 -2.2536 2.3446 11 7 5.2470 -4.0840 1.6704 12 6 5.4903 -4.5064 3.0518 13 6 6.2554 -5.8313 3.0528 14 7 6.4989 -6.2552 4.4381 15 6 5.2381 -6.5792 5.1188 16 6 7.4296 -7.3907 4.4854 17 6 7.8461 -7.6398 5.9121 18 8 7.4109 -6.9400 6.8019 19 7 8.7031 -8.6397 6.1990 20 6 9.0817 -8.8666 7.4970 21 1 8.6934 -8.2439 8.2895 22 6 9.9648 -9.8978 7.7931 23 7 10.4375 -10.6550 6.8287 24 14 10.4811 -10.2065 9.5615 25 1 9.5391 -11.1660 10.1918 26 1 11.8537 -10.7728 9.5848 27 1 10.4610 -8.9263 10.3139 28 6 2.1983 -1.1971 0.0008 29 1 -0.3632 -0.0005 1.0277 30 1 -0.3634 0.8901 -0.5134 31 1 -0.3633 -0.8898 -0.5141 32 1 1.6581 2.1325 0.0004 33 1 4.5166 2.8170 -1.0275 34 1 3.7443 3.2621 0.5132 35 1 5.2858 2.3723 0.5148 36 1 5.3517 0.0003 0.0060 37 1 3.7453 -3.2620 -0.5115 38 1 5.2867 -2.3719 -0.5114 39 1 5.5624 -4.6303 0.9335 40 1 6.0793 -3.7467 3.5657 41 1 4.5376 -4.6363 3.5653 42 1 5.6667 -6.5912 2.5389 43 1 7.2082 -5.7011 2.5396 44 1 4.7365 -7.3888 4.5887 45 1 5.4472 -6.8904 6.1423 46 1 4.5948 -5.6993 5.1305 47 1 6.9384 -8.2798 4.0898 48 1 8.3100 -7.1642 3.8840 49 1 9.0515 -9.1991 5.4874 50 1 11.0543 -11.3746 7.0353 51 1 1.6583 -2.1324 0.0007 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001663265858.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:18:40 Heat of formation + Delta-G solvation = -54.392590 kcal Electronic energy + Delta-G solvation = -28743.807354 eV Core-core repulsion = 24642.601934 eV Total energy + Delta-G solvation = -4101.205420 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.25 seconds Orbital eigenvalues (eV) -40.37176 -39.29988 -38.62133 -36.80085 -34.65033 -33.82587 -33.78489 -33.77552 -31.25829 -30.05788 -28.43064 -27.68570 -27.19084 -26.96692 -25.25131 -23.83532 -21.68302 -21.24166 -21.01135 -20.16571 -19.17303 -17.85632 -17.27095 -16.64145 -16.32615 -16.26932 -15.99652 -15.69747 -15.03976 -14.80655 -14.62818 -14.43911 -14.27342 -14.07832 -13.76419 -13.53328 -13.50746 -13.31736 -13.25856 -13.19722 -13.07803 -12.84147 -12.55886 -12.13596 -12.01865 -11.85216 -11.74591 -11.52285 -11.40235 -11.30195 -11.27150 -11.24566 -11.04706 -10.94539 -10.38862 -10.22087 -10.07796 -9.48128 -9.19361 -8.85258 -8.76783 -8.48445 -7.99234 -7.89475 -6.42103 -3.82759 1.08397 1.14976 2.48293 2.89842 3.17839 3.26673 3.32890 3.51324 3.89727 4.06310 4.27449 4.28605 4.44634 4.51319 4.66197 4.84672 4.86669 4.90108 4.96961 5.00740 5.05444 5.12133 5.16917 5.24379 5.26746 5.28322 5.30490 5.33196 5.38701 5.54149 5.57270 5.62887 5.68331 5.83559 5.86801 5.90499 5.92531 5.93379 6.00804 6.24048 6.27576 6.27714 6.29365 6.38395 6.55372 6.78423 7.18560 7.29249 7.33443 7.55220 8.06156 8.06552 8.61548 9.18052 9.53952 10.05913 10.75667 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.027048 B = 0.001387 C = 0.001376 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1034.966979 B =20180.726989 C =20337.972171 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.082 4.082 3 C -0.123 4.123 4 C -0.082 4.082 5 C -0.114 4.114 6 C -0.111 4.111 7 C -0.057 4.057 8 C -0.102 4.102 9 C 0.512 3.488 10 O -0.527 6.527 11 N -0.731 5.731 12 C 0.122 3.878 13 C 0.045 3.955 14 N -0.515 5.515 15 C 0.018 3.982 16 C 0.047 3.953 17 C 0.443 3.557 18 O -0.576 6.576 19 N -0.564 5.564 20 C -0.299 4.299 21 H 0.103 0.897 22 C 0.022 3.978 23 N -0.902 5.902 24 Si 0.930 3.070 25 H -0.278 1.278 26 H -0.284 1.284 27 H -0.269 1.269 28 C -0.111 4.111 29 H 0.070 0.930 30 H 0.065 0.935 31 H 0.065 0.935 32 H 0.119 0.881 33 H 0.069 0.931 34 H 0.065 0.935 35 H 0.066 0.934 36 H 0.119 0.881 37 H 0.102 0.898 38 H 0.103 0.897 39 H 0.399 0.601 40 H 0.079 0.921 41 H 0.069 0.931 42 H 0.036 0.964 43 H 0.079 0.921 44 H 0.015 0.985 45 H 0.098 0.902 46 H 0.063 0.937 47 H 0.048 0.952 48 H 0.089 0.911 49 H 0.392 0.608 50 H 0.271 0.729 51 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.531 17.443 -22.040 31.641 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.082 4.082 3 C -0.141 4.141 4 C -0.082 4.082 5 C -0.171 4.171 6 C -0.129 4.129 7 C -0.058 4.058 8 C -0.142 4.142 9 C 0.298 3.702 10 O -0.402 6.402 11 N -0.384 5.384 12 C -0.002 4.002 13 C -0.084 4.084 14 N -0.240 5.240 15 C -0.130 4.130 16 C -0.084 4.084 17 C 0.229 3.771 18 O -0.460 6.460 19 N -0.201 5.201 20 C -0.428 4.428 21 H 0.121 0.879 22 C -0.179 4.179 23 N -0.544 5.544 24 Si 0.757 3.243 25 H -0.204 1.204 26 H -0.209 1.209 27 H -0.194 1.194 28 C -0.129 4.129 29 H 0.089 0.911 30 H 0.084 0.916 31 H 0.084 0.916 32 H 0.137 0.863 33 H 0.088 0.912 34 H 0.084 0.916 35 H 0.085 0.915 36 H 0.137 0.863 37 H 0.121 0.879 38 H 0.121 0.879 39 H 0.233 0.767 40 H 0.097 0.903 41 H 0.088 0.912 42 H 0.054 0.946 43 H 0.097 0.903 44 H 0.034 0.966 45 H 0.116 0.884 46 H 0.081 0.919 47 H 0.066 0.934 48 H 0.107 0.893 49 H 0.225 0.775 50 H 0.081 0.919 51 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -14.752 18.642 -20.469 31.371 hybrid contribution 0.423 -1.701 -0.389 1.795 sum -14.329 16.942 -20.858 30.453 Atomic orbital electron populations 1.20784 0.91218 1.02593 1.02452 1.19834 0.95973 0.93019 0.99406 1.20883 0.93531 0.97473 1.02181 1.19842 0.93803 0.95204 0.99337 1.20788 1.00046 0.94061 1.02179 1.20828 0.99509 0.91454 1.01085 1.19196 0.93476 0.93457 0.99663 1.20678 1.02336 0.96363 0.94835 1.20491 0.77848 0.80649 0.91241 1.90762 1.49905 1.53321 1.46254 1.45957 1.58910 1.24301 1.09252 1.21330 1.00588 0.96397 0.81874 1.22252 0.99971 0.95299 0.90880 1.61437 1.13157 1.36462 1.12900 1.22626 0.89535 0.99030 1.01760 1.21868 0.96744 0.92071 0.97721 1.19707 0.84091 0.83821 0.89511 1.90494 1.58157 1.49315 1.48029 1.41858 1.40173 1.28569 1.09493 1.19710 1.24169 1.14228 0.84730 0.87886 1.25252 0.96878 0.96058 0.99726 1.69612 1.32578 1.19892 1.32294 0.85857 0.77685 0.78772 0.81977 1.20443 1.20937 1.19395 1.20809 0.93323 0.97585 1.01222 0.91097 0.91636 0.91586 0.86282 0.91241 0.91570 0.91453 0.86295 0.87944 0.87872 0.76746 0.90311 0.91228 0.94597 0.90291 0.96640 0.88371 0.91856 0.93363 0.89325 0.77511 0.91900 0.86369 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.74 10.01 36.01 0.36 -0.38 16 2 C -0.08 -0.74 5.88 -104.62 -0.62 -1.36 16 3 C -0.12 -1.10 9.36 -39.59 -0.37 -1.47 16 4 C -0.08 -0.75 5.88 -104.62 -0.62 -1.36 16 5 C -0.11 -0.76 10.01 36.01 0.36 -0.40 16 6 C -0.11 -1.07 9.36 -39.58 -0.37 -1.44 16 7 C -0.06 -0.55 4.37 -104.63 -0.46 -1.01 16 8 C -0.10 -0.74 5.83 -29.03 -0.17 -0.91 16 9 C 0.51 5.57 7.82 -10.99 -0.09 5.48 16 10 O -0.53 -8.31 16.03 5.55 0.09 -8.22 16 11 N -0.73 -6.70 5.56 -60.30 -0.33 -7.04 16 12 C 0.12 1.46 5.60 -4.05 -0.02 1.44 16 13 C 0.04 0.53 5.07 -3.82 -0.02 0.51 16 14 N -0.52 -8.43 4.50 -244.37 -1.10 -9.53 16 15 C 0.02 0.30 8.96 60.07 0.54 0.83 16 16 C 0.05 0.82 5.45 -4.98 -0.03 0.80 16 17 C 0.44 10.38 7.47 -10.98 -0.08 10.29 16 18 O -0.58 -15.48 13.91 5.55 0.08 -15.41 16 19 N -0.56 -14.17 5.29 -10.96 -0.06 -14.23 16 20 C -0.30 -8.30 9.68 -14.93 -0.14 -8.44 16 21 H 0.10 3.01 7.16 -52.48 -0.38 2.63 16 22 C 0.02 0.60 5.50 -17.47 -0.10 0.50 16 23 N -0.90 -24.38 13.05 55.50 0.72 -23.66 16 24 Si 0.93 21.02 29.55 -169.99 -5.02 16.00 16 25 H -0.28 -6.22 7.11 56.52 0.40 -5.81 16 26 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 27 H -0.27 -6.10 7.11 56.52 0.40 -5.70 16 28 C -0.11 -1.06 9.36 -39.59 -0.37 -1.43 16 29 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 30 H 0.06 0.35 8.08 -51.93 -0.42 -0.07 16 31 H 0.07 0.37 8.09 -51.93 -0.42 -0.05 16 32 H 0.12 0.83 8.06 -52.49 -0.42 0.41 16 33 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 34 H 0.07 0.39 8.08 -51.93 -0.42 -0.03 16 35 H 0.07 0.44 8.09 -51.93 -0.42 0.02 16 36 H 0.12 0.99 8.06 -52.49 -0.42 0.57 16 37 H 0.10 0.50 8.08 -51.93 -0.42 0.08 16 38 H 0.10 0.52 8.09 -51.93 -0.42 0.10 16 39 H 0.40 2.31 8.47 -40.82 -0.35 1.97 16 40 H 0.08 1.12 8.14 -51.93 -0.42 0.70 16 41 H 0.07 0.92 6.55 -51.93 -0.34 0.58 16 42 H 0.04 0.37 8.12 -51.93 -0.42 -0.05 16 43 H 0.08 0.83 7.93 -51.93 -0.41 0.42 16 44 H 0.02 0.22 8.14 -51.93 -0.42 -0.20 16 45 H 0.10 1.95 5.82 -51.93 -0.30 1.65 16 46 H 0.06 0.94 6.47 -51.93 -0.34 0.60 16 47 H 0.05 0.76 8.12 -51.92 -0.42 0.34 16 48 H 0.09 1.37 7.93 -51.93 -0.41 0.96 16 49 H 0.39 9.37 7.90 -40.82 -0.32 9.05 16 50 H 0.27 6.94 8.31 -40.82 -0.34 6.60 16 51 H 0.12 0.96 8.06 -52.49 -0.42 0.54 16 LS Contribution 422.87 15.07 6.37 6.37 Total: -1.00 -34.92 422.87 -9.74 -44.66 By element: Atomic # 1 Polarization: 17.71 SS G_CDS: -8.30 Total: 9.40 kcal Atomic # 6 Polarization: 3.84 SS G_CDS: -2.19 Total: 1.65 kcal Atomic # 7 Polarization: -53.69 SS G_CDS: -0.77 Total: -54.46 kcal Atomic # 8 Polarization: -23.79 SS G_CDS: 0.17 Total: -23.62 kcal Atomic # 14 Polarization: 21.02 SS G_CDS: -5.02 Total: 16.00 kcal Total LS contribution 6.37 Total: 6.37 kcal Total: -34.92 -9.74 -44.66 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001663265858.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.731 kcal (2) G-P(sol) polarization free energy of solvation -34.919 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.650 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.743 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.662 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.393 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.25 seconds