Wall clock time and date at job start Wed Apr 1 2020 04:18:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38234 * 119.99503 * 2 1 4 4 C 1.38231 * 119.99892 * 180.02562 * 3 2 1 5 5 C 1.50706 * 120.00319 * 180.02562 * 4 3 2 6 6 C 1.38243 * 120.00070 * 359.90902 * 4 3 2 7 7 C 1.38235 * 119.99602 * 0.07188 * 6 4 3 8 8 C 1.50701 * 119.99808 * 179.97438 * 7 6 4 9 9 C 1.50701 * 109.47148 * 89.99755 * 8 7 6 10 10 O 1.21286 * 119.99909 * 0.02562 * 9 8 7 11 11 N 1.34774 * 120.00373 * 179.97438 * 9 8 7 12 12 C 1.46492 * 120.00345 * 180.02562 * 11 9 8 13 13 C 1.53001 * 109.47251 * 180.02562 * 12 11 9 14 14 N 1.46906 * 109.47194 * 180.02562 * 13 12 11 15 15 C 1.46901 * 110.99989 * 66.03900 * 14 13 12 16 16 C 1.46894 * 111.00064 * 189.99966 * 14 13 12 17 17 C 1.50702 * 109.47214 * 169.99886 * 16 14 13 18 18 O 1.21286 * 119.99968 * 359.97438 * 17 16 14 19 19 N 1.34777 * 119.99601 * 180.02562 * 17 16 14 20 20 C 1.37099 * 119.99635 * 180.02562 * 19 17 16 21 21 H 1.08006 * 119.99501 * 359.97438 * 20 19 17 22 22 C 1.38950 * 120.00223 * 179.97438 * 20 19 17 23 23 N 1.31411 * 119.99556 * 0.02562 * 22 20 19 24 24 Si 1.86792 * 120.00033 * 179.97438 * 22 20 19 25 25 H 1.48504 * 109.46833 * 90.00529 * 24 22 20 26 26 H 1.48504 * 109.47442 * 210.00081 * 24 22 20 27 27 H 1.48501 * 109.47782 * 330.00385 * 24 22 20 28 28 C 1.38230 * 120.00326 * 359.97438 * 7 6 4 29 29 H 1.08999 * 109.46630 * 269.97351 * 1 2 3 30 30 H 1.08992 * 109.47454 * 29.97431 * 1 2 3 31 31 H 1.08996 * 109.46937 * 149.97950 * 1 2 3 32 32 H 1.07997 * 120.00455 * 0.02562 * 3 2 1 33 33 H 1.09001 * 109.47060 * 269.91029 * 5 4 3 34 34 H 1.08998 * 109.46941 * 29.90973 * 5 4 3 35 35 H 1.08998 * 109.47482 * 149.91122 * 5 4 3 36 36 H 1.08000 * 119.99728 * 180.34119 * 6 4 3 37 37 H 1.08993 * 109.47341 * 210.00461 * 8 7 6 38 38 H 1.09001 * 109.46864 * 330.00546 * 8 7 6 39 39 H 0.97000 * 119.99770 * 0.02562 * 11 9 8 40 40 H 1.09003 * 109.47200 * 300.00077 * 12 11 9 41 41 H 1.09001 * 109.47323 * 60.00059 * 12 11 9 42 42 H 1.08998 * 109.46716 * 299.99389 * 13 12 11 43 43 H 1.08996 * 109.47443 * 60.00011 * 13 12 11 44 44 H 1.09004 * 109.47151 * 60.00458 * 15 14 13 45 45 H 1.08995 * 109.47132 * 179.97438 * 15 14 13 46 46 H 1.09000 * 109.47742 * 300.00230 * 15 14 13 47 47 H 1.09008 * 109.47022 * 289.99722 * 16 14 13 48 48 H 1.09000 * 109.47242 * 49.99245 * 16 14 13 49 49 H 0.96997 * 120.00261 * 359.97438 * 19 17 16 50 50 H 0.96999 * 119.99628 * 179.97438 * 23 22 20 51 51 H 1.08001 * 120.00371 * 179.97438 * 28 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1981 1.1972 0.0000 4 6 3.5804 1.1973 -0.0005 5 6 4.3339 2.5025 0.0000 6 6 4.2717 0.0001 0.0008 7 6 3.5806 -1.1970 0.0012 8 6 4.3341 -2.5021 0.0021 9 6 4.5849 -2.9364 1.4233 10 8 4.1902 -2.2536 2.3446 11 7 5.2470 -4.0840 1.6704 12 6 5.4903 -4.5064 3.0518 13 6 6.2554 -5.8313 3.0528 14 7 6.4989 -6.2552 4.4381 15 6 5.2381 -6.5792 5.1188 16 6 7.4296 -7.3907 4.4854 17 6 7.8461 -7.6398 5.9121 18 8 7.4109 -6.9400 6.8019 19 7 8.7031 -8.6397 6.1990 20 6 9.0817 -8.8666 7.4970 21 1 8.6934 -8.2439 8.2895 22 6 9.9648 -9.8978 7.7931 23 7 10.4375 -10.6550 6.8287 24 14 10.4811 -10.2065 9.5615 25 1 9.5391 -11.1660 10.1918 26 1 11.8537 -10.7728 9.5848 27 1 10.4610 -8.9263 10.3139 28 6 2.1983 -1.1971 0.0008 29 1 -0.3632 -0.0005 1.0277 30 1 -0.3634 0.8901 -0.5134 31 1 -0.3633 -0.8898 -0.5141 32 1 1.6581 2.1325 0.0004 33 1 4.5166 2.8170 -1.0275 34 1 3.7443 3.2621 0.5132 35 1 5.2858 2.3723 0.5148 36 1 5.3517 0.0003 0.0060 37 1 3.7453 -3.2620 -0.5115 38 1 5.2867 -2.3719 -0.5114 39 1 5.5624 -4.6303 0.9335 40 1 6.0793 -3.7467 3.5657 41 1 4.5376 -4.6363 3.5653 42 1 5.6667 -6.5912 2.5389 43 1 7.2082 -5.7011 2.5396 44 1 4.7365 -7.3888 4.5887 45 1 5.4472 -6.8904 6.1423 46 1 4.5948 -5.6993 5.1305 47 1 6.9384 -8.2798 4.0898 48 1 8.3100 -7.1642 3.8840 49 1 9.0515 -9.1991 5.4874 50 1 11.0543 -11.3746 7.0353 51 1 1.6583 -2.1324 0.0007 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001663265858.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:18:39 Heat of formation + Delta-G solvation = -78.987985 kcal Electronic energy + Delta-G solvation = -28744.873890 eV Core-core repulsion = 24642.601934 eV Total energy + Delta-G solvation = -4102.271956 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.13761 -40.40730 -39.96019 -38.16638 -36.00961 -35.46662 -34.45510 -34.36839 -33.26992 -31.05407 -29.42956 -28.78322 -27.86079 -27.55582 -26.93558 -25.24671 -22.55417 -22.25817 -21.62069 -21.04096 -20.87345 -19.84782 -18.17243 -17.62797 -17.42121 -17.11229 -17.07048 -16.66630 -16.54887 -16.18936 -15.97722 -15.52888 -15.31658 -15.11808 -14.96906 -14.80339 -14.44848 -14.34303 -14.00386 -13.85794 -13.82999 -13.75992 -13.44912 -13.34402 -13.21195 -13.03312 -12.91717 -12.59620 -12.55898 -12.51367 -12.39742 -12.35818 -12.14847 -12.08420 -11.88819 -11.84332 -11.45348 -11.00300 -10.28603 -10.09746 -9.98485 -9.50771 -9.41391 -9.23697 -8.45636 -5.93787 0.41945 0.48987 1.38211 1.42187 1.54569 1.66312 2.05056 2.07451 2.31262 2.78949 3.00069 3.21532 3.43581 3.66309 3.83939 3.87369 3.94716 4.04739 4.11030 4.24274 4.26200 4.36438 4.39168 4.45085 4.47159 4.53430 4.53939 4.61694 4.63652 4.64100 4.70917 4.72384 4.79682 4.83637 4.87783 4.96323 5.00473 5.06481 5.20419 5.28852 5.36702 5.40299 5.42519 5.62567 5.65496 5.73685 5.85788 6.05189 6.16500 6.17483 6.58574 6.62781 7.14936 7.29888 7.58550 8.15173 8.71691 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.027048 B = 0.001387 C = 0.001376 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1034.966979 B =20180.726989 C =20337.972171 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.095 4.095 3 C -0.138 4.138 4 C -0.095 4.095 5 C -0.112 4.112 6 C -0.131 4.131 7 C -0.071 4.071 8 C -0.093 4.093 9 C 0.510 3.490 10 O -0.583 6.583 11 N -0.714 5.714 12 C 0.130 3.870 13 C 0.053 3.947 14 N -0.541 5.541 15 C 0.025 3.975 16 C 0.061 3.939 17 C 0.439 3.561 18 O -0.617 6.617 19 N -0.574 5.574 20 C -0.333 4.333 21 H 0.077 0.923 22 C -0.011 4.011 23 N -0.919 5.919 24 Si 0.991 3.009 25 H -0.271 1.271 26 H -0.270 1.270 27 H -0.275 1.275 28 C -0.131 4.131 29 H 0.068 0.932 30 H 0.077 0.923 31 H 0.075 0.925 32 H 0.134 0.866 33 H 0.082 0.918 34 H 0.072 0.928 35 H 0.066 0.934 36 H 0.126 0.874 37 H 0.132 0.868 38 H 0.131 0.869 39 H 0.420 0.580 40 H 0.051 0.949 41 H 0.054 0.946 42 H 0.063 0.937 43 H 0.100 0.900 44 H 0.036 0.964 45 H 0.055 0.945 46 H 0.071 0.929 47 H 0.073 0.927 48 H 0.115 0.885 49 H 0.397 0.603 50 H 0.277 0.723 51 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.469 16.916 -24.354 32.994 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.095 4.095 3 C -0.156 4.156 4 C -0.095 4.095 5 C -0.169 4.169 6 C -0.149 4.149 7 C -0.071 4.071 8 C -0.132 4.132 9 C 0.298 3.702 10 O -0.463 6.463 11 N -0.368 5.368 12 C 0.006 3.994 13 C -0.074 4.074 14 N -0.266 5.266 15 C -0.123 4.123 16 C -0.070 4.070 17 C 0.226 3.774 18 O -0.503 6.503 19 N -0.211 5.211 20 C -0.463 4.463 21 H 0.095 0.905 22 C -0.211 4.211 23 N -0.560 5.560 24 Si 0.815 3.185 25 H -0.197 1.197 26 H -0.195 1.195 27 H -0.200 1.200 28 C -0.149 4.149 29 H 0.087 0.913 30 H 0.096 0.904 31 H 0.093 0.907 32 H 0.152 0.848 33 H 0.101 0.899 34 H 0.091 0.909 35 H 0.085 0.915 36 H 0.144 0.856 37 H 0.150 0.850 38 H 0.149 0.851 39 H 0.257 0.743 40 H 0.069 0.931 41 H 0.072 0.928 42 H 0.081 0.919 43 H 0.118 0.882 44 H 0.054 0.946 45 H 0.074 0.926 46 H 0.089 0.911 47 H 0.091 0.909 48 H 0.133 0.867 49 H 0.231 0.769 50 H 0.087 0.913 51 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -14.676 18.080 -22.854 32.628 hybrid contribution 0.356 -1.471 0.304 1.544 sum -14.319 16.609 -22.550 31.455 Atomic orbital electron populations 1.20815 0.89723 1.03716 1.02620 1.20198 0.97316 0.93063 0.98885 1.21172 0.93803 0.98234 1.02389 1.20198 0.94278 0.96105 0.98896 1.20817 0.99784 0.93181 1.03111 1.21088 1.00099 0.91956 1.01803 1.19507 0.93828 0.94441 0.99355 1.20728 1.03988 0.96002 0.92520 1.21148 0.76719 0.80153 0.92171 1.90745 1.52262 1.55048 1.48216 1.45755 1.58162 1.24119 1.08763 1.21046 0.99345 0.95939 0.83118 1.22252 1.01471 0.95266 0.88445 1.61320 1.13049 1.36231 1.15994 1.22453 0.90040 1.00043 0.99755 1.21735 0.98286 0.93672 0.93304 1.20851 0.82397 0.82206 0.91923 1.90476 1.59131 1.50418 1.50260 1.41915 1.40987 1.29460 1.08780 1.19644 1.25838 1.15177 0.85622 0.90510 1.25981 0.96257 0.95298 1.03551 1.69663 1.32611 1.19999 1.33761 0.84961 0.77897 0.78335 0.77337 1.19677 1.19493 1.20016 1.21084 0.93745 0.98256 1.01779 0.91287 0.90384 0.90652 0.84830 0.89901 0.90943 0.91535 0.85608 0.85011 0.85132 0.74294 0.93090 0.92797 0.91930 0.88210 0.94571 0.92590 0.91057 0.90873 0.86661 0.76927 0.91331 0.85447 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.37 10.01 71.24 0.71 -0.66 16 2 C -0.09 -1.67 5.88 -19.87 -0.12 -1.79 16 3 C -0.14 -2.42 9.36 22.27 0.21 -2.21 16 4 C -0.09 -1.70 5.88 -19.86 -0.12 -1.82 16 5 C -0.11 -1.43 10.01 71.24 0.71 -0.71 16 6 C -0.13 -2.48 9.36 22.27 0.21 -2.27 16 7 C -0.07 -1.29 4.37 -19.87 -0.09 -1.38 16 8 C -0.09 -1.14 5.83 29.10 0.17 -0.97 16 9 C 0.51 10.41 7.82 87.66 0.69 11.09 16 10 O -0.58 -18.58 16.03 -3.05 -0.05 -18.63 16 11 N -0.71 -11.44 5.56 -463.07 -2.57 -14.01 16 12 C 0.13 2.96 5.60 86.38 0.48 3.44 16 13 C 0.05 1.10 5.07 86.30 0.44 1.53 16 14 N -0.54 -16.89 4.50 -927.04 -4.17 -21.06 16 15 C 0.03 0.81 8.96 127.69 1.14 1.95 16 16 C 0.06 2.00 5.45 85.56 0.47 2.47 16 17 C 0.44 20.70 7.47 87.66 0.66 21.36 16 18 O -0.62 -34.28 13.91 -3.05 -0.04 -34.32 16 19 N -0.57 -29.16 5.29 -306.98 -1.62 -30.78 16 20 C -0.33 -18.93 9.68 84.04 0.81 -18.12 16 21 H 0.08 4.68 7.16 -2.91 -0.02 4.66 16 22 C -0.01 -0.59 5.50 84.93 0.47 -0.12 16 23 N -0.92 -49.17 13.05 21.66 0.28 -48.89 16 24 Si 0.99 43.04 29.55 68.60 2.03 45.07 16 25 H -0.27 -11.43 7.11 99.48 0.71 -10.72 16 26 H -0.27 -11.08 7.11 99.48 0.71 -10.38 16 27 H -0.28 -12.12 7.11 99.48 0.71 -11.41 16 28 C -0.13 -2.41 9.36 22.27 0.21 -2.20 16 29 H 0.07 0.87 8.14 -2.39 -0.02 0.85 16 30 H 0.08 0.73 8.08 -2.39 -0.02 0.71 16 31 H 0.07 0.76 8.09 -2.39 -0.02 0.74 16 32 H 0.13 1.78 8.06 -2.91 -0.02 1.76 16 33 H 0.08 0.81 8.14 -2.39 -0.02 0.79 16 34 H 0.07 0.81 8.08 -2.39 -0.02 0.79 16 35 H 0.07 0.84 8.09 -2.39 -0.02 0.82 16 36 H 0.13 2.03 8.06 -2.91 -0.02 2.01 16 37 H 0.13 0.84 8.08 -2.39 -0.02 0.82 16 38 H 0.13 0.88 8.09 -2.39 -0.02 0.86 16 39 H 0.42 3.27 8.47 -92.71 -0.79 2.48 16 40 H 0.05 1.45 8.14 -2.39 -0.02 1.43 16 41 H 0.05 1.40 6.55 -2.39 -0.02 1.39 16 42 H 0.06 1.02 8.12 -2.39 -0.02 1.00 16 43 H 0.10 1.68 7.93 -2.39 -0.02 1.66 16 44 H 0.04 0.99 8.14 -2.38 -0.02 0.97 16 45 H 0.06 2.29 5.82 -2.39 -0.01 2.28 16 46 H 0.07 2.13 6.47 -2.39 -0.02 2.11 16 47 H 0.07 2.08 8.12 -2.38 -0.02 2.06 16 48 H 0.12 3.20 7.93 -2.39 -0.02 3.18 16 49 H 0.40 18.94 7.90 -92.71 -0.73 18.21 16 50 H 0.28 13.89 8.31 -92.71 -0.77 13.12 16 51 H 0.13 1.95 8.06 -2.91 -0.02 1.93 16 Total: -1.00 -79.26 422.87 0.33 -78.93 By element: Atomic # 1 Polarization: 34.68 SS G_CDS: -0.57 Total: 34.10 kcal Atomic # 6 Polarization: 2.55 SS G_CDS: 7.05 Total: 9.60 kcal Atomic # 7 Polarization: -106.66 SS G_CDS: -8.08 Total: -114.75 kcal Atomic # 8 Polarization: -52.86 SS G_CDS: -0.09 Total: -52.95 kcal Atomic # 14 Polarization: 43.04 SS G_CDS: 2.03 Total: 45.07 kcal Total: -79.26 0.33 -78.93 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001663265858.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.063 kcal (2) G-P(sol) polarization free energy of solvation -79.258 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.321 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.333 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.925 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.988 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds