Wall clock time and date at job start Wed Apr 1 2020 04:16:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38234 * 120.00260 * 2 1 4 4 C 1.38234 * 120.00240 * 179.97438 * 3 2 1 5 5 C 1.38233 * 120.00037 * 0.26327 * 4 3 2 6 6 C 1.50693 * 120.00207 * 179.72405 * 5 4 3 7 7 C 1.50709 * 109.47444 * 89.99457 * 6 5 4 8 8 O 1.21276 * 119.99531 * 0.02562 * 7 6 5 9 9 N 1.34771 * 120.00247 * 180.02562 * 7 6 5 10 10 C 1.46497 * 119.99945 * 180.02562 * 9 7 6 11 11 C 1.53003 * 109.47029 * 180.02562 * 10 9 7 12 12 H 1.09000 * 109.46879 * 304.99670 * 11 10 9 13 13 C 1.52994 * 109.47300 * 64.99536 * 11 10 9 14 14 C 1.52998 * 109.47117 * 184.99957 * 11 10 9 15 15 N 1.46903 * 109.47167 * 174.99781 * 14 11 10 16 16 C 1.46901 * 111.00014 * 179.97438 * 15 14 11 17 17 C 1.50692 * 109.47146 * 180.02562 * 16 15 14 18 18 O 1.21293 * 119.99990 * 359.97438 * 17 16 15 19 19 N 1.34776 * 120.00181 * 179.97438 * 17 16 15 20 20 C 1.37094 * 120.00272 * 180.02562 * 19 17 16 21 21 H 1.08007 * 120.00053 * 359.97438 * 20 19 17 22 22 C 1.38953 * 119.99994 * 180.02562 * 20 19 17 23 23 N 1.31410 * 119.99942 * 0.02562 * 22 20 19 24 24 Si 1.86800 * 119.99899 * 179.97438 * 22 20 19 25 25 H 1.48501 * 109.46982 * 59.99898 * 24 22 20 26 26 H 1.48492 * 109.47207 * 179.97438 * 24 22 20 27 27 H 1.48496 * 109.47336 * 300.00410 * 24 22 20 28 28 C 1.38238 * 119.99752 * 359.47832 * 5 4 3 29 29 C 1.38234 * 120.00033 * 0.49775 * 28 5 4 30 30 H 1.09000 * 109.46827 * 89.99810 * 1 2 3 31 31 H 1.08999 * 109.47240 * 210.00239 * 1 2 3 32 32 H 1.08999 * 109.46861 * 329.99859 * 1 2 3 33 33 H 1.07999 * 119.99751 * 359.97438 * 3 2 1 34 34 H 1.08002 * 119.99744 * 179.97438 * 4 3 2 35 35 H 1.09000 * 109.47097 * 209.99342 * 6 5 4 36 36 H 1.09001 * 109.47081 * 329.99847 * 6 5 4 37 37 H 0.97006 * 119.99744 * 359.97438 * 9 7 6 38 38 H 1.09000 * 109.46784 * 299.99416 * 10 9 7 39 39 H 1.08993 * 109.47321 * 59.99709 * 10 9 7 40 40 H 1.09005 * 109.47337 * 299.99862 * 13 11 10 41 41 H 1.09000 * 109.47045 * 60.00235 * 13 11 10 42 42 H 1.09003 * 109.47196 * 180.02562 * 13 11 10 43 43 H 1.09005 * 109.46905 * 294.99560 * 14 11 10 44 44 H 1.08996 * 109.47245 * 54.99385 * 14 11 10 45 45 H 1.00894 * 110.99812 * 56.04283 * 15 14 11 46 46 H 1.08998 * 109.47013 * 300.00039 * 16 15 14 47 47 H 1.09000 * 109.46796 * 59.99947 * 16 15 14 48 48 H 0.97004 * 119.99955 * 0.02562 * 19 17 16 49 49 H 0.96998 * 119.99457 * 179.97438 * 23 22 20 50 50 H 1.07999 * 119.99934 * 180.25938 * 28 5 4 51 51 H 1.08001 * 120.00294 * 179.76453 * 29 28 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1971 0.0000 4 6 3.5806 1.1971 0.0005 5 6 4.2717 0.0000 -0.0044 6 6 5.7787 0.0000 -0.0101 7 6 6.2865 -0.0027 1.4088 8 8 5.5019 -0.0049 2.3336 9 7 7.6124 -0.0027 1.6501 10 6 8.1060 -0.0058 3.0294 11 6 9.6360 -0.0044 3.0236 12 1 9.9978 -0.8444 2.4306 13 6 10.1425 1.3048 2.4153 14 6 10.1516 -0.1334 4.4583 15 7 11.6157 -0.2525 4.4436 16 6 12.1473 -0.3779 5.8073 17 6 13.6485 -0.4970 5.7522 18 8 14.2194 -0.4797 4.6822 19 7 14.3569 -0.6228 6.8919 20 6 15.7226 -0.7306 6.8418 21 1 16.2310 -0.7152 5.8890 22 6 16.4528 -0.8609 8.0168 23 7 15.8342 -0.8812 9.1760 24 14 18.3137 -1.0085 7.9485 25 1 18.8830 0.2025 7.3047 26 1 18.8512 -1.1346 9.3270 27 1 18.6864 -2.2100 7.1595 28 6 3.5805 -1.1972 0.0010 29 6 2.1982 -1.1972 0.0009 30 1 -0.3633 0.0000 -1.0277 31 1 -0.3633 -0.8899 0.5139 32 1 -0.3633 0.8900 0.5139 33 1 1.6582 2.1324 -0.0004 34 1 4.1205 2.1325 0.0001 35 1 6.1400 -0.8891 -0.5270 36 1 6.1401 0.8909 -0.5236 37 1 8.2400 -0.0013 0.9103 38 1 7.7442 0.8828 3.5467 39 1 7.7450 -0.8971 3.5424 40 1 9.7753 1.3967 1.3931 41 1 9.7807 2.1448 3.0083 42 1 11.2326 1.3056 2.4108 43 1 9.8646 0.7503 5.0283 44 1 9.7194 -1.0205 4.9213 45 1 12.0371 0.5274 3.9619 46 1 11.8742 0.5042 6.3863 47 1 11.7291 -1.2666 6.2800 48 1 13.9003 -0.6371 7.7477 49 1 16.3439 -0.9725 9.9962 50 1 4.1205 -2.1325 0.0013 51 1 1.6582 -2.1325 0.0013 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001666577627.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:16:35 Heat of formation + Delta-G solvation = -91.926043 kcal Electronic energy + Delta-G solvation = -28263.297695 eV Core-core repulsion = 24160.464703 eV Total energy + Delta-G solvation = -4102.832992 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.08527 -40.19975 -39.86955 -38.30145 -36.17535 -35.63498 -34.69842 -33.43790 -33.11947 -31.79249 -30.66914 -28.78986 -27.83070 -26.73077 -25.87925 -24.29063 -23.61834 -22.05673 -21.52705 -21.18838 -20.78863 -19.90277 -18.10978 -17.88481 -17.40524 -17.12757 -16.83618 -16.51293 -16.45450 -16.12314 -15.95906 -15.85402 -15.45612 -15.30996 -15.02693 -14.64245 -14.41493 -14.32840 -14.27434 -13.97476 -13.66326 -13.59545 -13.44930 -13.41474 -13.17933 -13.07351 -12.79471 -12.73246 -12.65359 -12.43200 -12.13400 -12.08440 -11.96016 -11.84256 -11.79913 -11.74461 -11.49791 -10.95486 -10.34626 -10.06451 -10.01776 -9.79146 -9.37808 -9.33071 -8.46454 -5.95491 0.40601 0.53687 1.40279 1.42263 1.53257 1.68447 2.05092 2.19844 2.30528 2.87791 2.99400 3.20931 3.53914 3.71939 3.88594 3.90834 3.92976 4.00135 4.08221 4.15044 4.16902 4.30533 4.33073 4.47150 4.53177 4.57429 4.58479 4.58847 4.64996 4.65756 4.77043 4.79948 4.83066 4.87085 4.96288 4.99113 5.02301 5.21365 5.26673 5.30995 5.36933 5.40770 5.49368 5.52032 5.68595 5.72599 5.88362 6.09662 6.15533 6.41869 6.59609 6.60031 7.12327 7.30182 7.56050 8.11047 8.70724 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.041607 B = 0.001215 C = 0.001202 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 672.800963 B =23040.786918 C =23280.960438 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.100 4.100 3 C -0.135 4.135 4 C -0.116 4.116 5 C -0.087 4.087 6 C -0.096 4.096 7 C 0.511 3.489 8 O -0.582 6.582 9 N -0.717 5.717 10 C 0.133 3.867 11 C -0.088 4.088 12 H 0.087 0.913 13 C -0.150 4.150 14 C 0.065 3.935 15 N -0.680 5.680 16 C 0.063 3.937 17 C 0.437 3.563 18 O -0.623 6.623 19 N -0.573 5.573 20 C -0.337 4.337 21 H 0.080 0.920 22 C -0.012 4.012 23 N -0.921 5.921 24 Si 0.993 3.007 25 H -0.271 1.271 26 H -0.271 1.271 27 H -0.272 1.272 28 C -0.117 4.117 29 C -0.135 4.135 30 H 0.080 0.920 31 H 0.070 0.930 32 H 0.071 0.929 33 H 0.135 0.865 34 H 0.130 0.870 35 H 0.127 0.873 36 H 0.129 0.871 37 H 0.416 0.584 38 H 0.060 0.940 39 H 0.058 0.942 40 H 0.075 0.925 41 H 0.055 0.945 42 H 0.052 0.948 43 H 0.039 0.961 44 H 0.077 0.923 45 H 0.345 0.655 46 H 0.065 0.935 47 H 0.103 0.897 48 H 0.396 0.604 49 H 0.278 0.722 50 H 0.129 0.871 51 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.228 3.638 -19.417 34.454 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.100 4.100 3 C -0.153 4.153 4 C -0.134 4.134 5 C -0.087 4.087 6 C -0.135 4.135 7 C 0.298 3.702 8 O -0.462 6.462 9 N -0.370 5.370 10 C 0.008 3.992 11 C -0.107 4.107 12 H 0.105 0.895 13 C -0.207 4.207 14 C -0.064 4.064 15 N -0.314 5.314 16 C -0.069 4.069 17 C 0.225 3.775 18 O -0.509 6.509 19 N -0.210 5.210 20 C -0.466 4.466 21 H 0.098 0.902 22 C -0.211 4.211 23 N -0.561 5.561 24 Si 0.816 3.184 25 H -0.196 1.196 26 H -0.195 1.195 27 H -0.197 1.197 28 C -0.135 4.135 29 C -0.153 4.153 30 H 0.098 0.902 31 H 0.089 0.911 32 H 0.090 0.910 33 H 0.152 0.848 34 H 0.148 0.852 35 H 0.145 0.855 36 H 0.147 0.853 37 H 0.253 0.747 38 H 0.078 0.922 39 H 0.077 0.923 40 H 0.094 0.906 41 H 0.074 0.926 42 H 0.071 0.929 43 H 0.058 0.942 44 H 0.096 0.904 45 H 0.165 0.835 46 H 0.083 0.917 47 H 0.121 0.879 48 H 0.230 0.770 49 H 0.087 0.913 50 H 0.147 0.853 51 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -28.327 2.957 -19.364 34.440 hybrid contribution 1.036 0.727 0.915 1.562 sum -27.290 3.684 -18.449 33.147 Atomic orbital electron populations 1.20827 0.89725 1.03350 1.03057 1.20267 0.97404 0.93193 0.99151 1.21277 0.94360 0.98358 1.01307 1.21232 0.94724 0.97958 0.99521 1.19520 0.94770 0.93618 1.00792 1.20728 0.92096 1.07746 0.92946 1.21079 0.82015 0.75001 0.92056 1.90724 1.56745 1.50986 1.47718 1.45920 1.06894 1.74935 1.09220 1.21179 0.93028 1.01633 0.83329 1.21202 0.92919 1.00081 0.96495 0.89472 1.21879 1.01156 0.96044 1.01633 1.21975 0.86638 1.01181 0.96634 1.60103 1.05453 1.50777 1.15020 1.21539 0.90517 1.03018 0.91864 1.20866 0.90472 0.82331 0.83873 1.90482 1.73004 1.57025 1.30410 1.41929 1.06850 1.64385 1.07804 1.19658 0.83035 1.49491 0.94429 0.90225 1.26039 1.04934 0.96211 0.93952 1.69668 1.38403 1.49942 0.98126 0.84991 0.76744 0.78973 0.77654 1.19602 1.19516 1.19699 1.21232 0.94743 0.97980 0.99549 1.21275 0.94351 0.98378 1.01330 0.90153 0.91059 0.91017 0.84753 0.85192 0.85474 0.85332 0.74683 0.92194 0.92334 0.90619 0.92614 0.92894 0.94239 0.90408 0.83475 0.91683 0.87890 0.76996 0.91288 0.85326 0.84823 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.13 10.01 71.24 0.71 -0.42 16 2 C -0.10 -1.55 5.88 -19.86 -0.12 -1.66 16 3 C -0.14 -2.14 9.70 22.27 0.22 -1.92 16 4 C -0.12 -1.91 9.70 22.27 0.22 -1.69 16 5 C -0.09 -1.41 4.37 -19.87 -0.09 -1.50 16 6 C -0.10 -1.04 5.83 29.10 0.17 -0.87 16 7 C 0.51 9.08 7.82 87.66 0.69 9.77 16 8 O -0.58 -16.30 16.03 -3.02 -0.05 -16.34 16 9 N -0.72 -9.83 5.28 -463.07 -2.45 -12.27 16 10 C 0.13 2.28 5.06 86.38 0.44 2.72 16 11 C -0.09 -1.51 2.63 -10.80 -0.03 -1.54 16 12 H 0.09 1.58 8.14 -2.39 -0.02 1.56 16 13 C -0.15 -2.37 8.84 71.98 0.64 -1.73 16 14 C 0.07 1.42 5.14 86.30 0.44 1.86 16 15 N -0.68 -20.58 6.12 -517.94 -3.17 -23.76 16 16 C 0.06 2.15 6.17 85.55 0.53 2.67 16 17 C 0.44 20.76 7.82 87.65 0.69 21.44 16 18 O -0.62 -34.29 15.78 -3.07 -0.05 -34.34 16 19 N -0.57 -29.43 5.29 -306.99 -1.62 -31.05 16 20 C -0.34 -19.14 9.68 84.04 0.81 -18.33 16 21 H 0.08 4.80 7.16 -2.91 -0.02 4.78 16 22 C -0.01 -0.62 5.50 84.93 0.47 -0.15 16 23 N -0.92 -49.74 13.05 21.66 0.28 -49.46 16 24 Si 0.99 42.78 29.55 68.60 2.03 44.81 16 25 H -0.27 -11.48 7.11 99.48 0.71 -10.78 16 26 H -0.27 -10.99 7.11 99.48 0.71 -10.28 16 27 H -0.27 -11.58 7.11 99.48 0.71 -10.88 16 28 C -0.12 -1.96 9.70 22.27 0.22 -1.74 16 29 C -0.14 -2.17 9.70 22.27 0.22 -1.96 16 30 H 0.08 0.62 8.14 -2.39 -0.02 0.60 16 31 H 0.07 0.63 8.09 -2.39 -0.02 0.61 16 32 H 0.07 0.62 8.09 -2.39 -0.02 0.60 16 33 H 0.13 1.58 8.06 -2.91 -0.02 1.56 16 34 H 0.13 1.69 8.06 -2.91 -0.02 1.67 16 35 H 0.13 0.76 8.09 -2.39 -0.02 0.74 16 36 H 0.13 0.71 8.09 -2.39 -0.02 0.69 16 37 H 0.42 3.26 7.66 -92.70 -0.71 2.55 16 38 H 0.06 1.15 8.14 -2.39 -0.02 1.13 16 39 H 0.06 1.15 8.14 -2.39 -0.02 1.13 16 40 H 0.07 0.86 7.18 -2.38 -0.02 0.84 16 41 H 0.05 0.88 8.14 -2.39 -0.02 0.86 16 42 H 0.05 1.02 6.68 -2.39 -0.02 1.01 16 43 H 0.04 0.81 8.14 -2.38 -0.02 0.79 16 44 H 0.08 1.66 8.14 -2.39 -0.02 1.64 16 45 H 0.35 10.87 6.68 -89.70 -0.60 10.27 16 46 H 0.07 1.95 8.14 -2.39 -0.02 1.93 16 47 H 0.10 3.19 8.14 -2.39 -0.02 3.17 16 48 H 0.40 19.36 7.90 -92.71 -0.73 18.63 16 49 H 0.28 14.08 8.31 -92.71 -0.77 13.31 16 50 H 0.13 1.76 8.06 -2.91 -0.02 1.73 16 51 H 0.13 1.63 8.06 -2.91 -0.02 1.60 16 Total: -1.00 -76.06 425.42 0.09 -75.97 By element: Atomic # 1 Polarization: 42.57 SS G_CDS: -1.09 Total: 41.48 kcal Atomic # 6 Polarization: -1.25 SS G_CDS: 6.21 Total: 4.96 kcal Atomic # 7 Polarization: -109.58 SS G_CDS: -6.96 Total: -116.54 kcal Atomic # 8 Polarization: -50.58 SS G_CDS: -0.10 Total: -50.68 kcal Atomic # 14 Polarization: 42.78 SS G_CDS: 2.03 Total: 44.81 kcal Total: -76.06 0.09 -75.97 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001666577627.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.957 kcal (2) G-P(sol) polarization free energy of solvation -76.062 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.019 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.093 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.969 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.926 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds