Wall clock time and date at job start Wed Apr 1 2020 04:16:35
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.50700 * 1
3 3 C 1.38234 * 120.00260 * 2 1
4 4 C 1.38234 * 120.00240 * 179.97438 * 3 2 1
5 5 C 1.38233 * 120.00037 * 0.26327 * 4 3 2
6 6 C 1.50693 * 120.00207 * 179.72405 * 5 4 3
7 7 C 1.50709 * 109.47444 * 89.99457 * 6 5 4
8 8 O 1.21276 * 119.99531 * 0.02562 * 7 6 5
9 9 N 1.34771 * 120.00247 * 180.02562 * 7 6 5
10 10 C 1.46497 * 119.99945 * 180.02562 * 9 7 6
11 11 C 1.53003 * 109.47029 * 180.02562 * 10 9 7
12 12 H 1.09000 * 109.46879 * 304.99670 * 11 10 9
13 13 C 1.52994 * 109.47300 * 64.99536 * 11 10 9
14 14 C 1.52998 * 109.47117 * 184.99957 * 11 10 9
15 15 N 1.46903 * 109.47167 * 174.99781 * 14 11 10
16 16 C 1.46901 * 111.00014 * 179.97438 * 15 14 11
17 17 C 1.50692 * 109.47146 * 180.02562 * 16 15 14
18 18 O 1.21293 * 119.99990 * 359.97438 * 17 16 15
19 19 N 1.34776 * 120.00181 * 179.97438 * 17 16 15
20 20 C 1.37094 * 120.00272 * 180.02562 * 19 17 16
21 21 H 1.08007 * 120.00053 * 359.97438 * 20 19 17
22 22 C 1.38953 * 119.99994 * 180.02562 * 20 19 17
23 23 N 1.31410 * 119.99942 * 0.02562 * 22 20 19
24 24 Si 1.86800 * 119.99899 * 179.97438 * 22 20 19
25 25 H 1.48501 * 109.46982 * 59.99898 * 24 22 20
26 26 H 1.48492 * 109.47207 * 179.97438 * 24 22 20
27 27 H 1.48496 * 109.47336 * 300.00410 * 24 22 20
28 28 C 1.38238 * 119.99752 * 359.47832 * 5 4 3
29 29 C 1.38234 * 120.00033 * 0.49775 * 28 5 4
30 30 H 1.09000 * 109.46827 * 89.99810 * 1 2 3
31 31 H 1.08999 * 109.47240 * 210.00239 * 1 2 3
32 32 H 1.08999 * 109.46861 * 329.99859 * 1 2 3
33 33 H 1.07999 * 119.99751 * 359.97438 * 3 2 1
34 34 H 1.08002 * 119.99744 * 179.97438 * 4 3 2
35 35 H 1.09000 * 109.47097 * 209.99342 * 6 5 4
36 36 H 1.09001 * 109.47081 * 329.99847 * 6 5 4
37 37 H 0.97006 * 119.99744 * 359.97438 * 9 7 6
38 38 H 1.09000 * 109.46784 * 299.99416 * 10 9 7
39 39 H 1.08993 * 109.47321 * 59.99709 * 10 9 7
40 40 H 1.09005 * 109.47337 * 299.99862 * 13 11 10
41 41 H 1.09000 * 109.47045 * 60.00235 * 13 11 10
42 42 H 1.09003 * 109.47196 * 180.02562 * 13 11 10
43 43 H 1.09005 * 109.46905 * 294.99560 * 14 11 10
44 44 H 1.08996 * 109.47245 * 54.99385 * 14 11 10
45 45 H 1.00894 * 110.99812 * 56.04283 * 15 14 11
46 46 H 1.08998 * 109.47013 * 300.00039 * 16 15 14
47 47 H 1.09000 * 109.46796 * 59.99947 * 16 15 14
48 48 H 0.97004 * 119.99955 * 0.02562 * 19 17 16
49 49 H 0.96998 * 119.99457 * 179.97438 * 23 22 20
50 50 H 1.07999 * 119.99934 * 180.25938 * 28 5 4
51 51 H 1.08001 * 120.00294 * 179.76453 * 29 28 5
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5070 0.0000 0.0000
3 6 2.1982 1.1971 0.0000
4 6 3.5806 1.1971 0.0005
5 6 4.2717 0.0000 -0.0044
6 6 5.7787 0.0000 -0.0101
7 6 6.2865 -0.0027 1.4088
8 8 5.5019 -0.0049 2.3336
9 7 7.6124 -0.0027 1.6501
10 6 8.1060 -0.0058 3.0294
11 6 9.6360 -0.0044 3.0236
12 1 9.9978 -0.8444 2.4306
13 6 10.1425 1.3048 2.4153
14 6 10.1516 -0.1334 4.4583
15 7 11.6157 -0.2525 4.4436
16 6 12.1473 -0.3779 5.8073
17 6 13.6485 -0.4970 5.7522
18 8 14.2194 -0.4797 4.6822
19 7 14.3569 -0.6228 6.8919
20 6 15.7226 -0.7306 6.8418
21 1 16.2310 -0.7152 5.8890
22 6 16.4528 -0.8609 8.0168
23 7 15.8342 -0.8812 9.1760
24 14 18.3137 -1.0085 7.9485
25 1 18.8830 0.2025 7.3047
26 1 18.8512 -1.1346 9.3270
27 1 18.6864 -2.2100 7.1595
28 6 3.5805 -1.1972 0.0010
29 6 2.1982 -1.1972 0.0009
30 1 -0.3633 0.0000 -1.0277
31 1 -0.3633 -0.8899 0.5139
32 1 -0.3633 0.8900 0.5139
33 1 1.6582 2.1324 -0.0004
34 1 4.1205 2.1325 0.0001
35 1 6.1400 -0.8891 -0.5270
36 1 6.1401 0.8909 -0.5236
37 1 8.2400 -0.0013 0.9103
38 1 7.7442 0.8828 3.5467
39 1 7.7450 -0.8971 3.5424
40 1 9.7753 1.3967 1.3931
41 1 9.7807 2.1448 3.0083
42 1 11.2326 1.3056 2.4108
43 1 9.8646 0.7503 5.0283
44 1 9.7194 -1.0205 4.9213
45 1 12.0371 0.5274 3.9619
46 1 11.8742 0.5042 6.3863
47 1 11.7291 -1.2666 6.2800
48 1 13.9003 -0.6371 7.7477
49 1 16.3439 -0.9725 9.9962
50 1 4.1205 -2.1325 0.0013
51 1 1.6582 -2.1325 0.0013
RHF calculation, no. of doubly occupied orbitals= 66
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001666577627.mol2 51
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 04:16:35
Heat of formation + Delta-G solvation = -91.926043 kcal
Electronic energy + Delta-G solvation = -28263.297695 eV
Core-core repulsion = 24160.464703 eV
Total energy + Delta-G solvation = -4102.832992 eV
No. of doubly occupied orbitals = 66
Molecular weight
(most abundant/longest-lived isotopes) = 347.200 amu
Computer time = 0.95 seconds
Orbital eigenvalues (eV)
-41.08527 -40.19975 -39.86955 -38.30145 -36.17535 -35.63498 -34.69842 -33.43790
-33.11947 -31.79249 -30.66914 -28.78986 -27.83070 -26.73077 -25.87925 -24.29063
-23.61834 -22.05673 -21.52705 -21.18838 -20.78863 -19.90277 -18.10978 -17.88481
-17.40524 -17.12757 -16.83618 -16.51293 -16.45450 -16.12314 -15.95906 -15.85402
-15.45612 -15.30996 -15.02693 -14.64245 -14.41493 -14.32840 -14.27434 -13.97476
-13.66326 -13.59545 -13.44930 -13.41474 -13.17933 -13.07351 -12.79471 -12.73246
-12.65359 -12.43200 -12.13400 -12.08440 -11.96016 -11.84256 -11.79913 -11.74461
-11.49791 -10.95486 -10.34626 -10.06451 -10.01776 -9.79146 -9.37808 -9.33071
-8.46454 -5.95491 0.40601 0.53687 1.40279 1.42263 1.53257 1.68447
2.05092 2.19844 2.30528 2.87791 2.99400 3.20931 3.53914 3.71939
3.88594 3.90834 3.92976 4.00135 4.08221 4.15044 4.16902 4.30533
4.33073 4.47150 4.53177 4.57429 4.58479 4.58847 4.64996 4.65756
4.77043 4.79948 4.83066 4.87085 4.96288 4.99113 5.02301 5.21365
5.26673 5.30995 5.36933 5.40770 5.49368 5.52032 5.68595 5.72599
5.88362 6.09662 6.15533 6.41869 6.59609 6.60031 7.12327 7.30182
7.56050 8.11047 8.70724
Molecular weight = 347.20amu
Principal moments of inertia in cm(-1)
A = 0.041607 B = 0.001215 C = 0.001202
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 672.800963 B =23040.786918 C =23280.960438
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.113 4.113
2 C -0.100 4.100
3 C -0.135 4.135
4 C -0.116 4.116
5 C -0.087 4.087
6 C -0.096 4.096
7 C 0.511 3.489
8 O -0.582 6.582
9 N -0.717 5.717
10 C 0.133 3.867
11 C -0.088 4.088
12 H 0.087 0.913
13 C -0.150 4.150
14 C 0.065 3.935
15 N -0.680 5.680
16 C 0.063 3.937
17 C 0.437 3.563
18 O -0.623 6.623
19 N -0.573 5.573
20 C -0.337 4.337
21 H 0.080 0.920
22 C -0.012 4.012
23 N -0.921 5.921
24 Si 0.993 3.007
25 H -0.271 1.271
26 H -0.271 1.271
27 H -0.272 1.272
28 C -0.117 4.117
29 C -0.135 4.135
30 H 0.080 0.920
31 H 0.070 0.930
32 H 0.071 0.929
33 H 0.135 0.865
34 H 0.130 0.870
35 H 0.127 0.873
36 H 0.129 0.871
37 H 0.416 0.584
38 H 0.060 0.940
39 H 0.058 0.942
40 H 0.075 0.925
41 H 0.055 0.945
42 H 0.052 0.948
43 H 0.039 0.961
44 H 0.077 0.923
45 H 0.345 0.655
46 H 0.065 0.935
47 H 0.103 0.897
48 H 0.396 0.604
49 H 0.278 0.722
50 H 0.129 0.871
51 H 0.134 0.866
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -28.228 3.638 -19.417 34.454
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.170 4.170
2 C -0.100 4.100
3 C -0.153 4.153
4 C -0.134 4.134
5 C -0.087 4.087
6 C -0.135 4.135
7 C 0.298 3.702
8 O -0.462 6.462
9 N -0.370 5.370
10 C 0.008 3.992
11 C -0.107 4.107
12 H 0.105 0.895
13 C -0.207 4.207
14 C -0.064 4.064
15 N -0.314 5.314
16 C -0.069 4.069
17 C 0.225 3.775
18 O -0.509 6.509
19 N -0.210 5.210
20 C -0.466 4.466
21 H 0.098 0.902
22 C -0.211 4.211
23 N -0.561 5.561
24 Si 0.816 3.184
25 H -0.196 1.196
26 H -0.195 1.195
27 H -0.197 1.197
28 C -0.135 4.135
29 C -0.153 4.153
30 H 0.098 0.902
31 H 0.089 0.911
32 H 0.090 0.910
33 H 0.152 0.848
34 H 0.148 0.852
35 H 0.145 0.855
36 H 0.147 0.853
37 H 0.253 0.747
38 H 0.078 0.922
39 H 0.077 0.923
40 H 0.094 0.906
41 H 0.074 0.926
42 H 0.071 0.929
43 H 0.058 0.942
44 H 0.096 0.904
45 H 0.165 0.835
46 H 0.083 0.917
47 H 0.121 0.879
48 H 0.230 0.770
49 H 0.087 0.913
50 H 0.147 0.853
51 H 0.152 0.848
Dipole moment (debyes) X Y Z Total
from point charges -28.327 2.957 -19.364 34.440
hybrid contribution 1.036 0.727 0.915 1.562
sum -27.290 3.684 -18.449 33.147
Atomic orbital electron populations
1.20827 0.89725 1.03350 1.03057 1.20267 0.97404 0.93193 0.99151
1.21277 0.94360 0.98358 1.01307 1.21232 0.94724 0.97958 0.99521
1.19520 0.94770 0.93618 1.00792 1.20728 0.92096 1.07746 0.92946
1.21079 0.82015 0.75001 0.92056 1.90724 1.56745 1.50986 1.47718
1.45920 1.06894 1.74935 1.09220 1.21179 0.93028 1.01633 0.83329
1.21202 0.92919 1.00081 0.96495 0.89472 1.21879 1.01156 0.96044
1.01633 1.21975 0.86638 1.01181 0.96634 1.60103 1.05453 1.50777
1.15020 1.21539 0.90517 1.03018 0.91864 1.20866 0.90472 0.82331
0.83873 1.90482 1.73004 1.57025 1.30410 1.41929 1.06850 1.64385
1.07804 1.19658 0.83035 1.49491 0.94429 0.90225 1.26039 1.04934
0.96211 0.93952 1.69668 1.38403 1.49942 0.98126 0.84991 0.76744
0.78973 0.77654 1.19602 1.19516 1.19699 1.21232 0.94743 0.97980
0.99549 1.21275 0.94351 0.98378 1.01330 0.90153 0.91059 0.91017
0.84753 0.85192 0.85474 0.85332 0.74683 0.92194 0.92334 0.90619
0.92614 0.92894 0.94239 0.90408 0.83475 0.91683 0.87890 0.76996
0.91288 0.85326 0.84823
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.11 -1.13 10.01 71.24 0.71 -0.42 16
2 C -0.10 -1.55 5.88 -19.86 -0.12 -1.66 16
3 C -0.14 -2.14 9.70 22.27 0.22 -1.92 16
4 C -0.12 -1.91 9.70 22.27 0.22 -1.69 16
5 C -0.09 -1.41 4.37 -19.87 -0.09 -1.50 16
6 C -0.10 -1.04 5.83 29.10 0.17 -0.87 16
7 C 0.51 9.08 7.82 87.66 0.69 9.77 16
8 O -0.58 -16.30 16.03 -3.02 -0.05 -16.34 16
9 N -0.72 -9.83 5.28 -463.07 -2.45 -12.27 16
10 C 0.13 2.28 5.06 86.38 0.44 2.72 16
11 C -0.09 -1.51 2.63 -10.80 -0.03 -1.54 16
12 H 0.09 1.58 8.14 -2.39 -0.02 1.56 16
13 C -0.15 -2.37 8.84 71.98 0.64 -1.73 16
14 C 0.07 1.42 5.14 86.30 0.44 1.86 16
15 N -0.68 -20.58 6.12 -517.94 -3.17 -23.76 16
16 C 0.06 2.15 6.17 85.55 0.53 2.67 16
17 C 0.44 20.76 7.82 87.65 0.69 21.44 16
18 O -0.62 -34.29 15.78 -3.07 -0.05 -34.34 16
19 N -0.57 -29.43 5.29 -306.99 -1.62 -31.05 16
20 C -0.34 -19.14 9.68 84.04 0.81 -18.33 16
21 H 0.08 4.80 7.16 -2.91 -0.02 4.78 16
22 C -0.01 -0.62 5.50 84.93 0.47 -0.15 16
23 N -0.92 -49.74 13.05 21.66 0.28 -49.46 16
24 Si 0.99 42.78 29.55 68.60 2.03 44.81 16
25 H -0.27 -11.48 7.11 99.48 0.71 -10.78 16
26 H -0.27 -10.99 7.11 99.48 0.71 -10.28 16
27 H -0.27 -11.58 7.11 99.48 0.71 -10.88 16
28 C -0.12 -1.96 9.70 22.27 0.22 -1.74 16
29 C -0.14 -2.17 9.70 22.27 0.22 -1.96 16
30 H 0.08 0.62 8.14 -2.39 -0.02 0.60 16
31 H 0.07 0.63 8.09 -2.39 -0.02 0.61 16
32 H 0.07 0.62 8.09 -2.39 -0.02 0.60 16
33 H 0.13 1.58 8.06 -2.91 -0.02 1.56 16
34 H 0.13 1.69 8.06 -2.91 -0.02 1.67 16
35 H 0.13 0.76 8.09 -2.39 -0.02 0.74 16
36 H 0.13 0.71 8.09 -2.39 -0.02 0.69 16
37 H 0.42 3.26 7.66 -92.70 -0.71 2.55 16
38 H 0.06 1.15 8.14 -2.39 -0.02 1.13 16
39 H 0.06 1.15 8.14 -2.39 -0.02 1.13 16
40 H 0.07 0.86 7.18 -2.38 -0.02 0.84 16
41 H 0.05 0.88 8.14 -2.39 -0.02 0.86 16
42 H 0.05 1.02 6.68 -2.39 -0.02 1.01 16
43 H 0.04 0.81 8.14 -2.38 -0.02 0.79 16
44 H 0.08 1.66 8.14 -2.39 -0.02 1.64 16
45 H 0.35 10.87 6.68 -89.70 -0.60 10.27 16
46 H 0.07 1.95 8.14 -2.39 -0.02 1.93 16
47 H 0.10 3.19 8.14 -2.39 -0.02 3.17 16
48 H 0.40 19.36 7.90 -92.71 -0.73 18.63 16
49 H 0.28 14.08 8.31 -92.71 -0.77 13.31 16
50 H 0.13 1.76 8.06 -2.91 -0.02 1.73 16
51 H 0.13 1.63 8.06 -2.91 -0.02 1.60 16
Total: -1.00 -76.06 425.42 0.09 -75.97
By element:
Atomic # 1 Polarization: 42.57 SS G_CDS: -1.09 Total: 41.48 kcal
Atomic # 6 Polarization: -1.25 SS G_CDS: 6.21 Total: 4.96 kcal
Atomic # 7 Polarization: -109.58 SS G_CDS: -6.96 Total: -116.54 kcal
Atomic # 8 Polarization: -50.58 SS G_CDS: -0.10 Total: -50.68 kcal
Atomic # 14 Polarization: 42.78 SS G_CDS: 2.03 Total: 44.81 kcal
Total: -76.06 0.09 -75.97 kcal
The number of atoms in the molecule is 51
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001666577627.mol2 51
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -15.957 kcal
(2) G-P(sol) polarization free energy of solvation -76.062 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.019 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.093 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.969 kcal
(6) G-S(sol) free energy of system = (1) + (5) -91.926 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.95 seconds