Wall clock time and date at job start Wed Apr 1 2020 04:16:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38238 * 120.00066 * 2 1 4 4 C 1.38238 * 120.00072 * 179.97438 * 3 2 1 5 5 C 1.38241 * 119.99590 * 0.02562 * 4 3 2 6 6 C 1.50701 * 119.99576 * 179.97438 * 5 4 3 7 7 C 1.50703 * 109.47064 * 90.00122 * 6 5 4 8 8 O 1.21278 * 119.99985 * 359.97438 * 7 6 5 9 9 N 1.34777 * 120.00161 * 180.02562 * 7 6 5 10 10 C 1.46496 * 120.00271 * 180.02562 * 9 7 6 11 11 C 1.52997 * 109.47194 * 179.97438 * 10 9 7 12 12 H 1.09000 * 109.47459 * 54.99521 * 11 10 9 13 13 C 1.53003 * 109.46992 * 294.99585 * 11 10 9 14 14 C 1.53002 * 109.47227 * 174.99954 * 11 10 9 15 15 N 1.46898 * 109.47132 * 184.99731 * 14 11 10 16 16 C 1.46895 * 111.00057 * 179.97438 * 15 14 11 17 17 C 1.50701 * 109.47427 * 180.02562 * 16 15 14 18 18 O 1.21288 * 119.99653 * 359.97438 * 17 16 15 19 19 N 1.34778 * 120.00069 * 180.02562 * 17 16 15 20 20 C 1.37096 * 120.00011 * 179.97438 * 19 17 16 21 21 H 1.07998 * 120.00006 * 359.97438 * 20 19 17 22 22 C 1.38952 * 120.00135 * 179.97438 * 20 19 17 23 23 N 1.31408 * 119.99851 * 359.97438 * 22 20 19 24 24 Si 1.86799 * 120.00031 * 179.97438 * 22 20 19 25 25 H 1.48501 * 109.46977 * 90.00072 * 24 22 20 26 26 H 1.48498 * 109.47396 * 210.00442 * 24 22 20 27 27 H 1.48501 * 109.47150 * 330.00290 * 24 22 20 28 28 C 1.38233 * 120.00269 * 0.24973 * 5 4 3 29 29 C 1.38232 * 120.00042 * 179.97438 * 2 1 3 30 30 H 1.09003 * 109.46652 * 89.99415 * 1 2 3 31 31 H 1.08995 * 109.47599 * 209.99687 * 1 2 3 32 32 H 1.09002 * 109.47019 * 330.00088 * 1 2 3 33 33 H 1.08002 * 119.99952 * 359.97438 * 3 2 1 34 34 H 1.07991 * 120.00062 * 179.97438 * 4 3 2 35 35 H 1.09002 * 109.47060 * 210.00086 * 6 5 4 36 36 H 1.09001 * 109.47380 * 330.00174 * 6 5 4 37 37 H 0.97005 * 119.99463 * 359.97438 * 9 7 6 38 38 H 1.09002 * 109.47021 * 299.99722 * 10 9 7 39 39 H 1.09001 * 109.47001 * 59.99554 * 10 9 7 40 40 H 1.08993 * 109.47618 * 300.00236 * 13 11 10 41 41 H 1.09002 * 109.47201 * 60.00376 * 13 11 10 42 42 H 1.09004 * 109.47134 * 180.02562 * 13 11 10 43 43 H 1.08998 * 109.46860 * 304.99708 * 14 11 10 44 44 H 1.09004 * 109.46934 * 64.99781 * 14 11 10 45 45 H 1.00898 * 111.00483 * 303.95469 * 15 14 11 46 46 H 1.09004 * 109.47187 * 300.00354 * 16 15 14 47 47 H 1.09008 * 109.47339 * 60.00115 * 16 15 14 48 48 H 0.97007 * 120.00119 * 359.97438 * 19 17 16 49 49 H 0.97004 * 119.99903 * 179.97438 * 23 22 20 50 50 H 1.08003 * 119.99927 * 179.72604 * 28 5 4 51 51 H 1.08004 * 120.00201 * 0.02562 * 29 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1972 0.0000 4 6 3.5805 1.1972 0.0005 5 6 4.2717 -0.0001 0.0005 6 6 5.7787 -0.0001 0.0005 7 6 6.2810 -0.0001 1.4214 8 8 5.4929 0.0003 2.3432 9 7 7.6061 0.0004 1.6677 10 6 8.0944 -0.0002 3.0489 11 6 9.6244 0.0000 3.0489 12 1 9.9877 0.8420 2.4598 13 6 10.1345 -1.3071 2.4387 14 6 10.1344 0.1251 4.4860 15 7 11.5984 0.2455 4.4772 16 6 12.1247 0.3685 5.8432 17 6 13.6259 0.4903 5.7941 18 8 14.2009 0.4757 4.7263 19 7 14.3297 0.6146 6.9368 20 6 15.6955 0.7249 6.8922 21 1 16.2075 0.7118 5.9414 22 6 16.4210 0.8535 8.0703 23 7 15.7979 0.8699 9.2271 24 14 18.2820 1.0031 8.0095 25 1 18.6605 2.4357 7.9119 26 1 18.8661 0.4197 9.2438 27 1 18.7988 0.2727 6.8243 28 6 3.5805 -1.1972 -0.0052 29 6 2.1981 -1.1971 0.0005 30 1 -0.3633 0.0001 -1.0277 31 1 -0.3634 -0.8899 0.5137 32 1 -0.3633 0.8900 0.5138 33 1 1.6582 2.1325 -0.0004 34 1 4.1205 2.1324 0.0001 35 1 6.1420 -0.8901 -0.5133 36 1 6.1421 0.8899 -0.5133 37 1 8.2364 0.0004 0.9304 38 1 7.7307 0.8894 3.5632 39 1 7.7315 -0.8906 3.5622 40 1 9.7712 -2.1492 3.0277 41 1 9.7712 -1.3963 1.4149 42 1 11.2245 -1.3073 2.4391 43 1 9.6997 1.0104 4.9499 44 1 9.8461 -0.7606 5.0522 45 1 12.0224 -0.5326 3.9947 46 1 11.7037 1.2558 6.3162 47 1 11.8502 -0.5152 6.4193 48 1 13.8698 0.6259 7.7909 49 1 16.3044 0.9593 10.0496 50 1 4.1205 -2.1325 -0.0097 51 1 1.6582 -2.1325 0.0005 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001666577628.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:16:40 Heat of formation + Delta-G solvation = -68.057505 kcal Electronic energy + Delta-G solvation = -28262.078109 eV Core-core repulsion = 24160.280134 eV Total energy + Delta-G solvation = -4101.797975 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -40.40001 -39.27450 -38.38659 -37.25280 -34.90706 -34.13058 -33.86667 -32.35386 -31.22450 -31.19760 -30.11266 -27.42391 -27.09786 -25.63883 -24.60979 -23.09298 -23.04510 -21.41873 -20.77544 -20.17985 -19.22020 -17.90547 -17.32889 -16.87344 -16.38271 -16.18939 -15.74863 -15.67384 -15.33639 -15.25793 -14.71669 -14.49076 -14.34010 -14.16195 -13.88761 -13.74847 -13.71593 -13.44419 -13.16892 -13.02723 -12.97355 -12.69761 -12.60696 -12.20816 -12.19659 -12.00466 -11.59243 -11.54873 -11.47838 -11.26556 -11.19125 -11.07661 -10.97652 -10.90752 -10.39732 -10.22305 -10.14521 -9.51236 -9.31524 -9.19568 -8.80952 -8.46872 -8.07121 -7.96162 -6.41918 -3.82828 0.98872 1.13206 2.39443 2.88225 3.17757 3.26380 3.32069 3.50094 3.90688 4.09198 4.26303 4.30910 4.43270 4.56907 4.61394 4.69626 4.69757 4.75367 4.80580 4.88093 5.04103 5.09408 5.13081 5.16843 5.21177 5.25364 5.35221 5.39679 5.42879 5.43817 5.53978 5.59238 5.71195 5.76536 5.78058 5.79097 5.84799 5.98340 6.04491 6.09058 6.12200 6.22120 6.26761 6.27095 6.29166 6.70592 7.19697 7.21844 7.54909 7.65201 7.97323 8.06059 8.61025 9.17569 9.54138 10.05480 10.75822 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.041512 B = 0.001215 C = 0.001203 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 674.336810 B =23037.259249 C =23278.272750 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.088 4.088 3 C -0.120 4.120 4 C -0.101 4.101 5 C -0.071 4.071 6 C -0.103 4.103 7 C 0.512 3.488 8 O -0.531 6.531 9 N -0.729 5.729 10 C 0.125 3.875 11 C -0.101 4.101 12 H 0.089 0.911 13 C -0.152 4.152 14 C 0.066 3.934 15 N -0.668 5.668 16 C 0.050 3.950 17 C 0.441 3.559 18 O -0.584 6.584 19 N -0.563 5.563 20 C -0.300 4.300 21 H 0.103 0.897 22 C 0.023 3.977 23 N -0.902 5.902 24 Si 0.930 3.070 25 H -0.278 1.278 26 H -0.284 1.284 27 H -0.270 1.270 28 C -0.101 4.101 29 C -0.120 4.120 30 H 0.069 0.931 31 H 0.065 0.935 32 H 0.065 0.935 33 H 0.121 0.879 34 H 0.120 0.880 35 H 0.102 0.898 36 H 0.103 0.897 37 H 0.401 0.599 38 H 0.069 0.931 39 H 0.067 0.933 40 H 0.054 0.946 41 H 0.054 0.946 42 H 0.067 0.933 43 H 0.074 0.926 44 H 0.030 0.970 45 H 0.349 0.651 46 H 0.086 0.914 47 H 0.043 0.957 48 H 0.392 0.608 49 H 0.271 0.729 50 H 0.119 0.881 51 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.693 -3.421 -18.809 33.651 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.088 4.088 3 C -0.138 4.138 4 C -0.119 4.119 5 C -0.072 4.072 6 C -0.143 4.143 7 C 0.298 3.702 8 O -0.407 6.407 9 N -0.382 5.382 10 C 0.001 3.999 11 C -0.120 4.120 12 H 0.107 0.893 13 C -0.210 4.210 14 C -0.064 4.064 15 N -0.302 5.302 16 C -0.083 4.083 17 C 0.226 3.774 18 O -0.469 6.469 19 N -0.200 5.200 20 C -0.430 4.430 21 H 0.121 0.879 22 C -0.179 4.179 23 N -0.543 5.543 24 Si 0.757 3.243 25 H -0.204 1.204 26 H -0.209 1.209 27 H -0.194 1.194 28 C -0.119 4.119 29 C -0.138 4.138 30 H 0.088 0.912 31 H 0.084 0.916 32 H 0.084 0.916 33 H 0.139 0.861 34 H 0.138 0.862 35 H 0.121 0.879 36 H 0.121 0.879 37 H 0.236 0.764 38 H 0.087 0.913 39 H 0.085 0.915 40 H 0.073 0.927 41 H 0.073 0.927 42 H 0.086 0.914 43 H 0.092 0.908 44 H 0.048 0.952 45 H 0.169 0.831 46 H 0.104 0.896 47 H 0.061 0.939 48 H 0.226 0.774 49 H 0.081 0.919 50 H 0.137 0.863 51 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -27.789 -2.745 -18.746 33.632 hybrid contribution 0.946 -0.782 0.722 1.424 sum -26.843 -3.527 -18.024 32.524 Atomic orbital electron populations 1.20794 0.91290 1.02831 1.02215 1.19923 0.96045 0.93260 0.99588 1.20986 0.94075 0.97547 1.01211 1.20963 0.94263 0.97356 0.99305 1.19233 0.93503 0.93629 1.00789 1.20679 0.93442 1.05341 0.94809 1.20539 0.82155 0.76263 0.91287 1.90744 1.55216 1.48496 1.46255 1.46032 1.06948 1.75912 1.09268 1.21370 0.93508 1.02463 0.82531 1.21363 0.93038 0.99746 0.97897 0.89279 1.21900 1.02160 0.96564 1.00332 1.21883 0.89157 1.00547 0.94852 1.60085 1.03305 1.50696 1.16082 1.21675 0.95230 1.01268 0.90095 1.19810 0.88017 0.84529 0.85042 1.90514 1.71152 1.55823 1.29367 1.41864 1.07405 1.63720 1.07001 1.19708 0.81525 1.46999 0.94743 0.87923 1.25259 1.00685 0.97308 0.94634 1.69614 1.36714 1.50295 0.97672 0.85859 0.82168 0.78539 0.77733 1.20380 1.20932 1.19424 1.20954 0.94261 0.97321 0.99404 1.20979 0.94070 0.97538 1.01253 0.91232 0.91561 0.91550 0.86114 0.86208 0.87932 0.87874 0.76434 0.91271 0.91464 0.92682 0.92742 0.91413 0.90774 0.95199 0.83077 0.89554 0.93855 0.77442 0.91867 0.86254 0.86138 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.63 10.01 36.00 0.36 -0.27 16 2 C -0.09 -0.70 5.88 -104.63 -0.62 -1.32 16 3 C -0.12 -0.98 9.70 -39.58 -0.38 -1.37 16 4 C -0.10 -0.87 9.70 -39.58 -0.38 -1.25 16 5 C -0.07 -0.61 4.37 -104.62 -0.46 -1.07 16 6 C -0.10 -0.66 5.83 -29.03 -0.17 -0.83 16 7 C 0.51 4.89 7.82 -10.98 -0.09 4.81 16 8 O -0.53 -7.49 16.03 5.56 0.09 -7.40 16 9 N -0.73 -5.68 5.28 -60.30 -0.32 -6.00 16 10 C 0.13 1.16 5.06 -4.05 -0.02 1.14 16 11 C -0.10 -0.95 2.63 -90.62 -0.24 -1.19 16 12 H 0.09 0.89 8.14 -51.93 -0.42 0.46 16 13 C -0.15 -1.34 8.84 37.16 0.33 -1.01 16 14 C 0.07 0.77 5.14 -3.82 -0.02 0.75 16 15 N -0.67 -10.46 6.12 -115.05 -0.70 -11.17 16 16 C 0.05 0.88 6.17 -4.98 -0.03 0.85 16 17 C 0.44 10.40 7.82 -10.98 -0.09 10.31 16 18 O -0.58 -15.81 15.78 5.55 0.09 -15.72 16 19 N -0.56 -14.30 5.29 -10.96 -0.06 -14.36 16 20 C -0.30 -8.39 9.68 -14.93 -0.14 -8.53 16 21 H 0.10 3.00 7.16 -52.49 -0.38 2.63 16 22 C 0.02 0.61 5.50 -17.47 -0.10 0.51 16 23 N -0.90 -24.55 13.05 55.50 0.72 -23.83 16 24 Si 0.93 21.02 29.55 -169.99 -5.02 16.00 16 25 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 26 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 27 H -0.27 -6.07 7.11 56.52 0.40 -5.67 16 28 C -0.10 -0.86 9.70 -39.58 -0.38 -1.25 16 29 C -0.12 -0.98 9.70 -39.58 -0.38 -1.36 16 30 H 0.07 0.31 8.14 -51.93 -0.42 -0.11 16 31 H 0.07 0.32 8.08 -51.93 -0.42 -0.10 16 32 H 0.07 0.32 8.09 -51.93 -0.42 -0.10 16 33 H 0.12 0.76 8.06 -52.49 -0.42 0.34 16 34 H 0.12 0.85 8.06 -52.49 -0.42 0.43 16 35 H 0.10 0.43 8.08 -51.93 -0.42 0.01 16 36 H 0.10 0.45 8.09 -51.93 -0.42 0.03 16 37 H 0.40 2.12 7.65 -40.82 -0.31 1.81 16 38 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 39 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 40 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 41 H 0.05 0.38 7.18 -51.93 -0.37 0.01 16 42 H 0.07 0.69 6.68 -51.93 -0.35 0.34 16 43 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 44 H 0.03 0.33 8.14 -51.93 -0.42 -0.09 16 45 H 0.35 5.59 6.68 -39.29 -0.26 5.33 16 46 H 0.09 1.41 8.14 -51.93 -0.42 0.99 16 47 H 0.04 0.69 8.14 -51.92 -0.42 0.27 16 48 H 0.39 9.52 7.90 -40.82 -0.32 9.20 16 49 H 0.27 6.99 8.31 -40.82 -0.34 6.65 16 50 H 0.12 0.83 8.06 -52.48 -0.42 0.41 16 51 H 0.12 0.75 8.06 -52.48 -0.42 0.33 16 LS Contribution 425.41 15.07 6.41 6.41 Total: -1.00 -34.72 425.41 -9.91 -44.63 By element: Atomic # 1 Polarization: 20.82 SS G_CDS: -8.30 Total: 12.52 kcal Atomic # 6 Polarization: 1.74 SS G_CDS: -2.81 Total: -1.08 kcal Atomic # 7 Polarization: -55.00 SS G_CDS: -0.36 Total: -55.36 kcal Atomic # 8 Polarization: -23.30 SS G_CDS: 0.18 Total: -23.12 kcal Atomic # 14 Polarization: 21.02 SS G_CDS: -5.02 Total: 16.00 kcal Total LS contribution 6.41 Total: 6.41 kcal Total: -34.72 -9.91 -44.63 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001666577628.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.429 kcal (2) G-P(sol) polarization free energy of solvation -34.721 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.150 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.907 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.629 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.058 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds