Wall clock time and date at job start Wed Apr 1 2020 04:16:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38238 * 120.00066 * 2 1 4 4 C 1.38238 * 120.00072 * 179.97438 * 3 2 1 5 5 C 1.38241 * 119.99590 * 0.02562 * 4 3 2 6 6 C 1.50701 * 119.99576 * 179.97438 * 5 4 3 7 7 C 1.50703 * 109.47064 * 90.00122 * 6 5 4 8 8 O 1.21278 * 119.99985 * 359.97438 * 7 6 5 9 9 N 1.34777 * 120.00161 * 180.02562 * 7 6 5 10 10 C 1.46496 * 120.00271 * 180.02562 * 9 7 6 11 11 C 1.52997 * 109.47194 * 179.97438 * 10 9 7 12 12 H 1.09000 * 109.47459 * 54.99521 * 11 10 9 13 13 C 1.53003 * 109.46992 * 294.99585 * 11 10 9 14 14 C 1.53002 * 109.47227 * 174.99954 * 11 10 9 15 15 N 1.46898 * 109.47132 * 184.99731 * 14 11 10 16 16 C 1.46895 * 111.00057 * 179.97438 * 15 14 11 17 17 C 1.50701 * 109.47427 * 180.02562 * 16 15 14 18 18 O 1.21288 * 119.99653 * 359.97438 * 17 16 15 19 19 N 1.34778 * 120.00069 * 180.02562 * 17 16 15 20 20 C 1.37096 * 120.00011 * 179.97438 * 19 17 16 21 21 H 1.07998 * 120.00006 * 359.97438 * 20 19 17 22 22 C 1.38952 * 120.00135 * 179.97438 * 20 19 17 23 23 N 1.31408 * 119.99851 * 359.97438 * 22 20 19 24 24 Si 1.86799 * 120.00031 * 179.97438 * 22 20 19 25 25 H 1.48501 * 109.46977 * 90.00072 * 24 22 20 26 26 H 1.48498 * 109.47396 * 210.00442 * 24 22 20 27 27 H 1.48501 * 109.47150 * 330.00290 * 24 22 20 28 28 C 1.38233 * 120.00269 * 0.24973 * 5 4 3 29 29 C 1.38232 * 120.00042 * 179.97438 * 2 1 3 30 30 H 1.09003 * 109.46652 * 89.99415 * 1 2 3 31 31 H 1.08995 * 109.47599 * 209.99687 * 1 2 3 32 32 H 1.09002 * 109.47019 * 330.00088 * 1 2 3 33 33 H 1.08002 * 119.99952 * 359.97438 * 3 2 1 34 34 H 1.07991 * 120.00062 * 179.97438 * 4 3 2 35 35 H 1.09002 * 109.47060 * 210.00086 * 6 5 4 36 36 H 1.09001 * 109.47380 * 330.00174 * 6 5 4 37 37 H 0.97005 * 119.99463 * 359.97438 * 9 7 6 38 38 H 1.09002 * 109.47021 * 299.99722 * 10 9 7 39 39 H 1.09001 * 109.47001 * 59.99554 * 10 9 7 40 40 H 1.08993 * 109.47618 * 300.00236 * 13 11 10 41 41 H 1.09002 * 109.47201 * 60.00376 * 13 11 10 42 42 H 1.09004 * 109.47134 * 180.02562 * 13 11 10 43 43 H 1.08998 * 109.46860 * 304.99708 * 14 11 10 44 44 H 1.09004 * 109.46934 * 64.99781 * 14 11 10 45 45 H 1.00898 * 111.00483 * 303.95469 * 15 14 11 46 46 H 1.09004 * 109.47187 * 300.00354 * 16 15 14 47 47 H 1.09008 * 109.47339 * 60.00115 * 16 15 14 48 48 H 0.97007 * 120.00119 * 359.97438 * 19 17 16 49 49 H 0.97004 * 119.99903 * 179.97438 * 23 22 20 50 50 H 1.08003 * 119.99927 * 179.72604 * 28 5 4 51 51 H 1.08004 * 120.00201 * 0.02562 * 29 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1972 0.0000 4 6 3.5805 1.1972 0.0005 5 6 4.2717 -0.0001 0.0005 6 6 5.7787 -0.0001 0.0005 7 6 6.2810 -0.0001 1.4214 8 8 5.4929 0.0003 2.3432 9 7 7.6061 0.0004 1.6677 10 6 8.0944 -0.0002 3.0489 11 6 9.6244 0.0000 3.0489 12 1 9.9877 0.8420 2.4598 13 6 10.1345 -1.3071 2.4387 14 6 10.1344 0.1251 4.4860 15 7 11.5984 0.2455 4.4772 16 6 12.1247 0.3685 5.8432 17 6 13.6259 0.4903 5.7941 18 8 14.2009 0.4757 4.7263 19 7 14.3297 0.6146 6.9368 20 6 15.6955 0.7249 6.8922 21 1 16.2075 0.7118 5.9414 22 6 16.4210 0.8535 8.0703 23 7 15.7979 0.8699 9.2271 24 14 18.2820 1.0031 8.0095 25 1 18.6605 2.4357 7.9119 26 1 18.8661 0.4197 9.2438 27 1 18.7988 0.2727 6.8243 28 6 3.5805 -1.1972 -0.0052 29 6 2.1981 -1.1971 0.0005 30 1 -0.3633 0.0001 -1.0277 31 1 -0.3634 -0.8899 0.5137 32 1 -0.3633 0.8900 0.5138 33 1 1.6582 2.1325 -0.0004 34 1 4.1205 2.1324 0.0001 35 1 6.1420 -0.8901 -0.5133 36 1 6.1421 0.8899 -0.5133 37 1 8.2364 0.0004 0.9304 38 1 7.7307 0.8894 3.5632 39 1 7.7315 -0.8906 3.5622 40 1 9.7712 -2.1492 3.0277 41 1 9.7712 -1.3963 1.4149 42 1 11.2245 -1.3073 2.4391 43 1 9.6997 1.0104 4.9499 44 1 9.8461 -0.7606 5.0522 45 1 12.0224 -0.5326 3.9947 46 1 11.7037 1.2558 6.3162 47 1 11.8502 -0.5152 6.4193 48 1 13.8698 0.6259 7.7909 49 1 16.3044 0.9593 10.0496 50 1 4.1205 -2.1325 -0.0097 51 1 1.6582 -2.1325 0.0005 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001666577628.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:16:39 Heat of formation + Delta-G solvation = -92.032461 kcal Electronic energy + Delta-G solvation = -28263.117741 eV Core-core repulsion = 24160.280134 eV Total energy + Delta-G solvation = -4102.837607 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.08393 -40.20066 -39.86982 -38.30145 -36.17600 -35.63584 -34.69901 -33.43796 -33.11949 -31.79208 -30.66927 -28.79003 -27.83087 -26.73207 -25.88024 -24.29067 -23.61855 -22.05671 -21.52695 -21.18906 -20.78897 -19.90403 -18.11029 -17.88531 -17.40563 -17.12857 -16.83626 -16.51474 -16.45461 -16.12106 -15.95658 -15.85526 -15.45711 -15.31083 -15.02749 -14.64214 -14.41548 -14.32929 -14.27440 -13.97646 -13.66373 -13.59768 -13.45133 -13.41735 -13.17925 -13.07565 -12.80080 -12.73349 -12.65323 -12.41845 -12.12857 -12.08496 -11.96024 -11.84207 -11.79976 -11.74439 -11.50520 -10.95480 -10.34692 -10.06438 -10.01745 -9.79158 -9.37780 -9.32987 -8.46687 -5.95621 0.40684 0.53618 1.38436 1.42295 1.55024 1.68401 2.04950 2.19796 2.30435 2.87786 2.99360 3.20786 3.53841 3.71818 3.88642 3.90819 3.92979 4.00119 4.08244 4.15175 4.16812 4.30552 4.33058 4.47067 4.53179 4.57423 4.58456 4.58866 4.64901 4.65736 4.77021 4.79928 4.83027 4.87093 4.96293 4.99085 5.02355 5.21371 5.26661 5.30981 5.36946 5.40958 5.49402 5.52007 5.68583 5.72611 5.88423 6.09741 6.15536 6.41924 6.59573 6.59932 7.12362 7.30170 7.56000 8.10965 8.70731 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.041512 B = 0.001215 C = 0.001203 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 674.336810 B =23037.259249 C =23278.272750 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.100 4.100 3 C -0.135 4.135 4 C -0.117 4.117 5 C -0.086 4.086 6 C -0.096 4.096 7 C 0.511 3.489 8 O -0.582 6.582 9 N -0.717 5.717 10 C 0.133 3.867 11 C -0.088 4.088 12 H 0.087 0.913 13 C -0.150 4.150 14 C 0.065 3.935 15 N -0.680 5.680 16 C 0.063 3.937 17 C 0.437 3.563 18 O -0.623 6.623 19 N -0.573 5.573 20 C -0.335 4.335 21 H 0.080 0.920 22 C -0.012 4.012 23 N -0.921 5.921 24 Si 0.993 3.007 25 H -0.271 1.271 26 H -0.271 1.271 27 H -0.272 1.272 28 C -0.117 4.117 29 C -0.135 4.135 30 H 0.080 0.920 31 H 0.071 0.929 32 H 0.070 0.930 33 H 0.134 0.866 34 H 0.129 0.871 35 H 0.129 0.871 36 H 0.127 0.873 37 H 0.416 0.584 38 H 0.058 0.942 39 H 0.060 0.940 40 H 0.055 0.945 41 H 0.075 0.925 42 H 0.052 0.948 43 H 0.077 0.923 44 H 0.039 0.961 45 H 0.345 0.655 46 H 0.103 0.897 47 H 0.065 0.935 48 H 0.396 0.604 49 H 0.278 0.722 50 H 0.130 0.870 51 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.158 -3.623 -19.540 34.464 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.100 4.100 3 C -0.153 4.153 4 C -0.135 4.135 5 C -0.087 4.087 6 C -0.135 4.135 7 C 0.299 3.701 8 O -0.462 6.462 9 N -0.370 5.370 10 C 0.008 3.992 11 C -0.107 4.107 12 H 0.105 0.895 13 C -0.207 4.207 14 C -0.064 4.064 15 N -0.314 5.314 16 C -0.069 4.069 17 C 0.225 3.775 18 O -0.509 6.509 19 N -0.210 5.210 20 C -0.465 4.465 21 H 0.098 0.902 22 C -0.212 4.212 23 N -0.562 5.562 24 Si 0.816 3.184 25 H -0.197 1.197 26 H -0.195 1.195 27 H -0.196 1.196 28 C -0.135 4.135 29 C -0.153 4.153 30 H 0.098 0.902 31 H 0.090 0.910 32 H 0.089 0.911 33 H 0.152 0.848 34 H 0.147 0.853 35 H 0.147 0.853 36 H 0.145 0.855 37 H 0.253 0.747 38 H 0.077 0.923 39 H 0.078 0.922 40 H 0.074 0.926 41 H 0.094 0.906 42 H 0.071 0.929 43 H 0.096 0.904 44 H 0.058 0.942 45 H 0.165 0.835 46 H 0.121 0.879 47 H 0.083 0.917 48 H 0.230 0.770 49 H 0.087 0.913 50 H 0.148 0.852 51 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -28.257 -2.946 -19.490 34.453 hybrid contribution 1.031 -0.721 0.925 1.562 sum -27.226 -3.667 -18.565 33.156 Atomic orbital electron populations 1.20826 0.89729 1.03347 1.03056 1.20264 0.97403 0.93195 0.99171 1.21277 0.94354 0.98376 1.01312 1.21234 0.94743 0.97979 0.99577 1.19521 0.94779 0.93620 1.00762 1.20727 0.92130 1.07751 0.92908 1.21079 0.82014 0.74999 0.92054 1.90725 1.56478 1.50987 1.47989 1.45921 1.06916 1.74937 1.09197 1.21179 0.93081 1.01633 0.83276 1.21203 0.92931 1.00099 0.96464 0.89471 1.21879 1.01142 0.96063 1.01629 1.21975 0.86647 1.01171 0.96627 1.60085 1.05497 1.50944 1.14848 1.21541 0.90541 1.03011 0.91838 1.20869 0.90496 0.82311 0.83843 1.90481 1.72773 1.57013 1.30643 1.41936 1.06892 1.64402 1.07769 1.19687 0.83044 1.49368 0.94397 0.90243 1.26038 1.04930 0.96242 0.93954 1.69674 1.38338 1.50031 0.98119 0.84929 0.76781 0.78697 0.77947 1.19675 1.19547 1.19650 1.21234 0.94722 0.97953 0.99553 1.21279 0.94367 0.98357 1.01284 0.90152 0.91018 0.91065 0.84822 0.85314 0.85327 0.85472 0.74683 0.92335 0.92195 0.92618 0.90614 0.92895 0.90410 0.94239 0.83464 0.87893 0.91673 0.76994 0.91298 0.85177 0.84755 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.13 10.01 71.23 0.71 -0.42 16 2 C -0.10 -1.55 5.88 -19.87 -0.12 -1.67 16 3 C -0.14 -2.17 9.70 22.27 0.22 -1.96 16 4 C -0.12 -1.96 9.70 22.27 0.22 -1.74 16 5 C -0.09 -1.41 4.37 -19.86 -0.09 -1.49 16 6 C -0.10 -1.04 5.83 29.10 0.17 -0.87 16 7 C 0.51 9.09 7.82 87.66 0.69 9.77 16 8 O -0.58 -16.31 16.03 -3.02 -0.05 -16.35 16 9 N -0.72 -9.83 5.28 -463.07 -2.45 -12.27 16 10 C 0.13 2.28 5.06 86.38 0.44 2.72 16 11 C -0.09 -1.51 2.63 -10.79 -0.03 -1.54 16 12 H 0.09 1.58 8.14 -2.39 -0.02 1.56 16 13 C -0.15 -2.36 8.84 71.98 0.64 -1.73 16 14 C 0.07 1.42 5.14 86.30 0.44 1.86 16 15 N -0.68 -20.58 6.12 -517.92 -3.17 -23.75 16 16 C 0.06 2.15 6.17 85.56 0.53 2.67 16 17 C 0.44 20.77 7.82 87.66 0.69 21.45 16 18 O -0.62 -34.29 15.78 -3.05 -0.05 -34.34 16 19 N -0.57 -29.44 5.29 -306.99 -1.62 -31.06 16 20 C -0.34 -19.08 9.68 84.04 0.81 -18.26 16 21 H 0.08 4.81 7.16 -2.91 -0.02 4.78 16 22 C -0.01 -0.63 5.50 84.93 0.47 -0.17 16 23 N -0.92 -49.74 13.05 21.66 0.28 -49.46 16 24 Si 0.99 42.80 29.55 68.60 2.03 44.83 16 25 H -0.27 -11.37 7.11 99.48 0.71 -10.67 16 26 H -0.27 -11.04 7.11 99.48 0.71 -10.33 16 27 H -0.27 -11.72 7.11 99.48 0.71 -11.01 16 28 C -0.12 -1.91 9.70 22.27 0.22 -1.69 16 29 C -0.13 -2.13 9.70 22.27 0.22 -1.92 16 30 H 0.08 0.62 8.14 -2.39 -0.02 0.60 16 31 H 0.07 0.63 8.08 -2.39 -0.02 0.61 16 32 H 0.07 0.63 8.09 -2.39 -0.02 0.61 16 33 H 0.13 1.63 8.06 -2.91 -0.02 1.60 16 34 H 0.13 1.75 8.06 -2.92 -0.02 1.73 16 35 H 0.13 0.71 8.08 -2.39 -0.02 0.69 16 36 H 0.13 0.76 8.09 -2.39 -0.02 0.74 16 37 H 0.42 3.26 7.65 -92.70 -0.71 2.55 16 38 H 0.06 1.15 8.14 -2.39 -0.02 1.13 16 39 H 0.06 1.15 8.14 -2.39 -0.02 1.13 16 40 H 0.05 0.88 8.14 -2.39 -0.02 0.86 16 41 H 0.07 0.86 7.18 -2.39 -0.02 0.84 16 42 H 0.05 1.02 6.68 -2.38 -0.02 1.00 16 43 H 0.08 1.66 8.14 -2.39 -0.02 1.64 16 44 H 0.04 0.81 8.14 -2.38 -0.02 0.79 16 45 H 0.35 10.87 6.68 -89.70 -0.60 10.27 16 46 H 0.10 3.19 8.14 -2.38 -0.02 3.17 16 47 H 0.07 1.96 8.14 -2.38 -0.02 1.94 16 48 H 0.40 19.36 7.90 -92.70 -0.73 18.62 16 49 H 0.28 14.03 8.31 -92.71 -0.77 13.26 16 50 H 0.13 1.69 8.06 -2.91 -0.02 1.67 16 51 H 0.13 1.58 8.06 -2.91 -0.02 1.56 16 Total: -1.00 -76.14 425.41 0.09 -76.05 By element: Atomic # 1 Polarization: 42.43 SS G_CDS: -1.09 Total: 41.34 kcal Atomic # 6 Polarization: -1.19 SS G_CDS: 6.21 Total: 5.02 kcal Atomic # 7 Polarization: -109.59 SS G_CDS: -6.96 Total: -116.55 kcal Atomic # 8 Polarization: -50.60 SS G_CDS: -0.10 Total: -50.70 kcal Atomic # 14 Polarization: 42.80 SS G_CDS: 2.03 Total: 44.83 kcal Total: -76.14 0.09 -76.05 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001666577628.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.983 kcal (2) G-P(sol) polarization free energy of solvation -76.143 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.127 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.094 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.049 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.032 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds