Wall clock time and date at job start Wed Apr 1 2020 04:16:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38259 * 120.00330 * 2 1 4 4 C 1.38209 * 120.00387 * 179.97438 * 3 2 1 5 5 C 1.38255 * 119.99617 * 359.81432 * 4 3 2 6 6 C 1.38207 * 120.00353 * 0.41606 * 5 4 3 7 7 C 1.50702 * 120.00462 * 179.80978 * 6 5 4 8 8 C 1.50699 * 109.47246 * 269.73160 * 7 6 5 9 9 O 1.21283 * 119.99843 * 359.97438 * 8 7 6 10 10 N 1.34776 * 120.00475 * 179.97438 * 8 7 6 11 11 C 1.46509 * 119.99370 * 0.02562 * 10 8 7 12 12 C 1.46497 * 120.00710 * 180.02562 * 10 8 7 13 13 H 1.09002 * 109.46725 * 0.02562 * 12 10 8 14 14 C 1.52997 * 109.47188 * 240.00300 * 12 10 8 15 15 C 1.52992 * 109.47081 * 119.99844 * 12 10 8 16 16 N 1.46903 * 109.47578 * 305.00372 * 15 12 10 17 17 C 1.46903 * 111.00177 * 180.02562 * 16 15 12 18 18 C 1.50698 * 109.47148 * 180.02562 * 17 16 15 19 19 O 1.21291 * 119.99715 * 359.97438 * 18 17 16 20 20 N 1.34769 * 120.00371 * 179.97438 * 18 17 16 21 21 C 1.37097 * 120.00527 * 179.97438 * 20 18 17 22 22 H 1.08002 * 119.99598 * 0.02562 * 21 20 18 23 23 C 1.38950 * 120.00225 * 180.02562 * 21 20 18 24 24 N 1.31418 * 120.00023 * 359.97438 * 23 21 20 25 25 Si 1.86797 * 120.00096 * 180.02562 * 23 21 20 26 26 H 1.48501 * 109.47100 * 89.99699 * 25 23 21 27 27 H 1.48494 * 109.47103 * 209.99740 * 25 23 21 28 28 H 1.48504 * 109.46980 * 329.99880 * 25 23 21 29 29 C 1.38218 * 120.00137 * 179.97438 * 2 1 3 30 30 H 1.09003 * 109.46800 * 270.02147 * 1 2 3 31 31 H 1.08993 * 109.47522 * 30.01367 * 1 2 3 32 32 H 1.09004 * 109.47382 * 150.02004 * 1 2 3 33 33 H 1.08005 * 119.99431 * 0.02562 * 3 2 1 34 34 H 1.08002 * 120.00107 * 180.02562 * 4 3 2 35 35 H 1.08007 * 119.99748 * 180.23641 * 5 4 3 36 36 H 1.08994 * 109.47418 * 149.73165 * 7 6 5 37 37 H 1.09006 * 109.46868 * 29.72633 * 7 6 5 38 38 H 1.09003 * 109.46975 * 269.99637 * 11 10 8 39 39 H 1.08995 * 109.47277 * 29.99688 * 11 10 8 40 40 H 1.09003 * 109.46743 * 150.00175 * 11 10 8 41 41 H 1.09002 * 109.47153 * 299.99573 * 14 12 10 42 42 H 1.09001 * 109.46832 * 179.97438 * 14 12 10 43 43 H 1.09004 * 109.47261 * 59.99745 * 14 12 10 44 44 H 1.09001 * 109.47563 * 65.00613 * 15 12 10 45 45 H 1.09004 * 109.47313 * 185.00269 * 15 12 10 46 46 H 1.00895 * 110.99987 * 56.04684 * 16 15 12 47 47 H 1.09001 * 109.46813 * 299.99603 * 17 16 15 48 48 H 1.08993 * 109.47342 * 59.99787 * 17 16 15 49 49 H 0.97004 * 119.99872 * 359.97438 * 20 18 17 50 50 H 0.96992 * 119.99832 * 180.02562 * 24 23 21 51 51 H 1.07999 * 119.99514 * 359.97438 * 29 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1973 0.0000 4 6 3.5804 1.1973 0.0005 5 6 4.2716 0.0000 0.0050 6 6 3.5806 -1.1969 0.0001 7 6 4.3341 -2.5021 0.0006 8 6 4.5849 -2.9379 -1.4200 9 8 4.1902 -2.2561 -2.3421 10 7 5.2477 -4.0853 -1.6659 11 6 5.7239 -4.9093 -0.5520 12 6 5.4920 -4.5088 -3.0469 13 1 5.0683 -3.7747 -3.7323 14 6 4.8355 -5.8697 -3.2868 15 6 6.9989 -4.6199 -3.2873 16 7 7.6451 -3.3467 -2.9419 17 6 9.0960 -3.4162 -3.1612 18 6 9.7231 -2.0953 -2.7964 19 8 9.0294 -1.1854 -2.3938 20 7 11.0545 -1.9250 -2.9175 21 6 11.6249 -0.7232 -2.5861 22 1 11.0072 0.0870 -2.2276 23 6 12.9975 -0.5475 -2.7115 24 7 13.7491 -1.5336 -3.1472 25 14 13.7748 1.0898 -2.2593 26 1 14.1580 1.0764 -0.8246 27 1 14.9839 1.3106 -3.0926 28 1 12.8002 2.1839 -2.5011 29 6 2.1981 -1.1970 0.0005 30 1 -0.3633 0.0004 1.0277 31 1 -0.3634 0.8898 -0.5140 32 1 -0.3634 -0.8902 -0.5135 33 1 1.6583 2.1326 0.0004 34 1 4.1205 2.1327 0.0010 35 1 5.3517 0.0000 0.0092 36 1 3.7452 -3.2615 0.5150 37 1 5.2867 -2.3715 0.5141 38 1 6.7319 -4.5995 -0.2760 39 1 5.0588 -4.7846 0.3024 40 1 5.7355 -5.9566 -0.8538 41 1 5.2596 -6.6036 -2.6015 42 1 5.0169 -6.1845 -4.3145 43 1 3.7619 -5.7905 -3.1156 44 1 7.4084 -5.4157 -2.6651 45 1 7.1836 -4.8481 -4.3370 46 1 7.4351 -3.0807 -1.9916 47 1 9.5203 -4.2037 -2.5383 48 1 9.2949 -3.6358 -4.2101 49 1 11.6092 -2.6529 -3.2391 50 1 14.7073 -1.4111 -3.2344 51 1 1.6580 -2.1323 0.0014 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001666983174.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:16:47 Heat of formation + Delta-G solvation = -49.177777 kcal Electronic energy + Delta-G solvation = -30441.881958 eV Core-core repulsion = 26340.902669 eV Total energy + Delta-G solvation = -4100.979288 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.35434 -39.15610 -38.22674 -36.81132 -34.60079 -33.81189 -33.55021 -32.24802 -31.51988 -31.16143 -27.91411 -27.58029 -27.02319 -26.82716 -24.96609 -23.26685 -22.46392 -21.74874 -20.45931 -19.26116 -18.89529 -17.87067 -17.35969 -16.58070 -16.37449 -16.04068 -15.81593 -15.42719 -15.06860 -14.75145 -14.49521 -14.34417 -13.95795 -13.84773 -13.65769 -13.57010 -13.38328 -13.20181 -13.02931 -12.98002 -12.62138 -12.52279 -12.42892 -12.36981 -11.98192 -11.90044 -11.80918 -11.60357 -11.57309 -11.38641 -11.09378 -11.04316 -10.97813 -10.89730 -10.38048 -10.20165 -9.74063 -9.49079 -8.77515 -8.75028 -8.56238 -8.39283 -8.00399 -7.93168 -6.40069 -3.80671 1.33931 1.43196 2.71466 2.92927 3.18827 3.27358 3.33956 3.77305 3.93170 4.09873 4.31084 4.54020 4.66091 4.71506 4.84964 4.89661 4.92633 5.03252 5.08401 5.11843 5.15191 5.21011 5.25043 5.27648 5.32142 5.37826 5.42830 5.43074 5.45847 5.52267 5.58599 5.65343 5.67781 5.68952 5.80020 5.89406 5.99877 6.03328 6.10087 6.12160 6.28918 6.49082 6.52600 6.56200 6.62590 7.03283 7.25670 7.34373 7.56896 7.70448 8.08424 8.25448 8.63588 9.19938 9.56358 10.08318 10.77784 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.009396 B = 0.002657 C = 0.002151 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2979.265915 B =10536.038741 C =13016.949651 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.092 4.092 3 C -0.122 4.122 4 C -0.114 4.114 5 C -0.103 4.103 6 C -0.062 4.062 7 C -0.101 4.101 8 C 0.520 3.480 9 O -0.518 6.518 10 N -0.614 5.614 11 C 0.072 3.928 12 C 0.137 3.863 13 H 0.110 0.890 14 C -0.158 4.158 15 C 0.051 3.949 16 N -0.663 5.663 17 C 0.051 3.949 18 C 0.441 3.559 19 O -0.580 6.580 20 N -0.565 5.565 21 C -0.297 4.297 22 H 0.102 0.898 23 C 0.021 3.979 24 N -0.903 5.903 25 Si 0.929 3.071 26 H -0.278 1.278 27 H -0.284 1.284 28 H -0.269 1.269 29 C -0.107 4.107 30 H 0.067 0.933 31 H 0.064 0.936 32 H 0.064 0.936 33 H 0.118 0.882 34 H 0.122 0.878 35 H 0.125 0.875 36 H 0.099 0.901 37 H 0.104 0.896 38 H 0.056 0.944 39 H 0.072 0.928 40 H 0.073 0.927 41 H 0.057 0.943 42 H 0.069 0.931 43 H 0.059 0.941 44 H 0.027 0.973 45 H 0.081 0.919 46 H 0.347 0.653 47 H 0.041 0.959 48 H 0.086 0.914 49 H 0.392 0.608 50 H 0.271 0.729 51 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.506 -9.219 7.349 24.526 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.092 4.092 3 C -0.140 4.140 4 C -0.132 4.132 5 C -0.122 4.122 6 C -0.062 4.062 7 C -0.141 4.141 8 C 0.308 3.692 9 O -0.392 6.392 10 N -0.350 5.350 11 C -0.071 4.071 12 C 0.034 3.966 13 H 0.128 0.872 14 C -0.217 4.217 15 C -0.080 4.080 16 N -0.296 5.296 17 C -0.082 4.082 18 C 0.226 3.774 19 O -0.464 6.464 20 N -0.202 5.202 21 C -0.427 4.427 22 H 0.120 0.880 23 C -0.180 4.180 24 N -0.544 5.544 25 Si 0.757 3.243 26 H -0.205 1.205 27 H -0.209 1.209 28 H -0.194 1.194 29 C -0.125 4.125 30 H 0.086 0.914 31 H 0.083 0.917 32 H 0.083 0.917 33 H 0.136 0.864 34 H 0.140 0.860 35 H 0.143 0.857 36 H 0.117 0.883 37 H 0.122 0.878 38 H 0.074 0.926 39 H 0.091 0.909 40 H 0.091 0.909 41 H 0.076 0.924 42 H 0.088 0.912 43 H 0.078 0.922 44 H 0.045 0.955 45 H 0.099 0.901 46 H 0.167 0.833 47 H 0.058 0.942 48 H 0.104 0.896 49 H 0.225 0.775 50 H 0.081 0.919 51 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -22.106 -7.938 6.474 24.364 hybrid contribution 1.427 -0.397 0.731 1.652 sum -20.679 -8.335 7.205 23.431 Atomic orbital electron populations 1.20755 0.91439 1.02645 1.01963 1.19813 0.95819 0.93167 1.00429 1.20995 0.94307 0.97310 1.01436 1.21120 0.94215 0.98110 0.99707 1.21093 1.00266 0.91917 0.98878 1.19244 0.93375 0.93668 0.99938 1.20715 1.02274 0.95999 0.95083 1.20442 0.77487 0.80115 0.91190 1.90736 1.49870 1.52506 1.46102 1.47860 1.57334 1.23025 1.06754 1.21809 0.99917 0.95922 0.89443 1.21145 0.94872 0.97112 0.83471 0.87230 1.22100 1.00946 0.96364 1.02290 1.22327 0.93405 0.90909 1.01363 1.59978 1.08479 1.29034 1.32101 1.21680 0.88286 0.96528 1.01698 1.19820 0.83047 0.89487 0.85039 1.90534 1.61638 1.43272 1.50948 1.41861 1.05496 1.14700 1.58123 1.19699 0.90972 0.91343 1.40692 0.87971 1.25256 0.96226 0.99160 0.97360 1.69615 1.06263 1.31943 1.46615 0.85863 0.78498 0.81711 0.78269 1.20454 1.20923 1.19384 1.20764 0.93283 0.97370 1.01106 0.91448 0.91680 0.91741 0.86386 0.85957 0.85740 0.88332 0.87789 0.92588 0.90917 0.90854 0.92384 0.91194 0.92155 0.95464 0.90061 0.83271 0.94155 0.89610 0.77505 0.91921 0.86634 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.91 10.01 36.00 0.36 -0.55 16 2 C -0.09 -1.04 5.88 -104.62 -0.62 -1.65 16 3 C -0.12 -1.41 9.70 -39.58 -0.38 -1.80 16 4 C -0.11 -1.44 10.05 -39.59 -0.40 -1.84 16 5 C -0.10 -1.43 9.70 -39.59 -0.38 -1.82 16 6 C -0.06 -0.79 4.37 -104.63 -0.46 -1.25 16 7 C -0.10 -1.08 4.38 -29.03 -0.13 -1.21 16 8 C 0.52 7.16 7.67 -10.99 -0.08 7.07 16 9 O -0.52 -9.50 15.36 5.56 0.09 -9.41 16 10 N -0.61 -6.94 1.83 -173.93 -0.32 -7.26 16 11 C 0.07 0.56 9.38 59.85 0.56 1.12 16 12 C 0.14 1.61 2.95 -67.94 -0.20 1.41 16 13 H 0.11 1.63 6.90 -51.93 -0.36 1.27 16 14 C -0.16 -1.32 9.17 37.16 0.34 -0.98 16 15 C 0.05 0.63 5.03 -3.83 -0.02 0.61 16 16 N -0.66 -11.40 6.12 -115.06 -0.70 -12.11 16 17 C 0.05 0.93 6.17 -4.98 -0.03 0.90 16 18 C 0.44 10.71 7.82 -10.99 -0.09 10.63 16 19 O -0.58 -16.28 15.78 5.55 0.09 -16.19 16 20 N -0.56 -14.59 5.29 -10.97 -0.06 -14.64 16 21 C -0.30 -8.43 9.68 -14.93 -0.14 -8.58 16 22 H 0.10 3.05 7.16 -52.49 -0.38 2.67 16 23 C 0.02 0.58 5.50 -17.46 -0.10 0.48 16 24 N -0.90 -24.79 13.05 55.50 0.72 -24.07 16 25 Si 0.93 21.33 29.55 -169.99 -5.02 16.31 16 26 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 27 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 28 H -0.27 -6.20 7.11 56.52 0.40 -5.80 16 29 C -0.11 -1.26 9.36 -39.58 -0.37 -1.63 16 30 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 31 H 0.06 0.48 8.09 -51.93 -0.42 0.06 16 32 H 0.06 0.49 8.09 -51.93 -0.42 0.07 16 33 H 0.12 1.09 8.06 -52.48 -0.42 0.67 16 34 H 0.12 1.36 8.06 -52.49 -0.42 0.94 16 35 H 0.12 1.76 8.06 -52.48 -0.42 1.34 16 36 H 0.10 0.75 7.34 -51.93 -0.38 0.37 16 37 H 0.10 1.02 8.05 -51.93 -0.42 0.60 16 38 H 0.06 0.47 8.13 -51.93 -0.42 0.05 16 39 H 0.07 0.41 6.44 -51.93 -0.33 0.08 16 40 H 0.07 0.45 6.43 -51.93 -0.33 0.12 16 41 H 0.06 0.41 6.66 -51.93 -0.35 0.06 16 42 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 43 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 44 H 0.03 0.30 7.84 -51.93 -0.41 -0.11 16 45 H 0.08 0.96 8.14 -51.93 -0.42 0.54 16 46 H 0.35 6.27 7.55 -39.29 -0.30 5.97 16 47 H 0.04 0.65 8.14 -51.93 -0.42 0.23 16 48 H 0.09 1.45 8.14 -51.93 -0.42 1.03 16 49 H 0.39 9.64 7.90 -40.82 -0.32 9.31 16 50 H 0.27 7.04 8.31 -40.82 -0.34 6.70 16 51 H 0.12 1.14 8.06 -52.49 -0.42 0.72 16 LS Contribution 421.09 15.07 6.35 6.35 Total: -1.00 -35.65 421.09 -9.19 -44.84 By element: Atomic # 1 Polarization: 23.48 SS G_CDS: -8.20 Total: 15.28 kcal Atomic # 6 Polarization: 3.04 SS G_CDS: -2.13 Total: 0.91 kcal Atomic # 7 Polarization: -57.72 SS G_CDS: -0.36 Total: -58.08 kcal Atomic # 8 Polarization: -25.78 SS G_CDS: 0.17 Total: -25.61 kcal Atomic # 14 Polarization: 21.33 SS G_CDS: -5.02 Total: 16.31 kcal Total LS contribution 6.35 Total: 6.35 kcal Total: -35.65 -9.19 -44.84 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001666983174.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.335 kcal (2) G-P(sol) polarization free energy of solvation -35.649 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.984 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.194 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.843 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.178 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds