Wall clock time and date at job start Wed Apr 1 2020 04:16:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38259 * 120.00330 * 2 1 4 4 C 1.38209 * 120.00387 * 179.97438 * 3 2 1 5 5 C 1.38255 * 119.99617 * 359.81432 * 4 3 2 6 6 C 1.38207 * 120.00353 * 0.41606 * 5 4 3 7 7 C 1.50702 * 120.00462 * 179.80978 * 6 5 4 8 8 C 1.50699 * 109.47246 * 269.73160 * 7 6 5 9 9 O 1.21283 * 119.99843 * 359.97438 * 8 7 6 10 10 N 1.34776 * 120.00475 * 179.97438 * 8 7 6 11 11 C 1.46509 * 119.99370 * 0.02562 * 10 8 7 12 12 C 1.46497 * 120.00710 * 180.02562 * 10 8 7 13 13 H 1.09002 * 109.46725 * 0.02562 * 12 10 8 14 14 C 1.52997 * 109.47188 * 240.00300 * 12 10 8 15 15 C 1.52992 * 109.47081 * 119.99844 * 12 10 8 16 16 N 1.46903 * 109.47578 * 305.00372 * 15 12 10 17 17 C 1.46903 * 111.00177 * 180.02562 * 16 15 12 18 18 C 1.50698 * 109.47148 * 180.02562 * 17 16 15 19 19 O 1.21291 * 119.99715 * 359.97438 * 18 17 16 20 20 N 1.34769 * 120.00371 * 179.97438 * 18 17 16 21 21 C 1.37097 * 120.00527 * 179.97438 * 20 18 17 22 22 H 1.08002 * 119.99598 * 0.02562 * 21 20 18 23 23 C 1.38950 * 120.00225 * 180.02562 * 21 20 18 24 24 N 1.31418 * 120.00023 * 359.97438 * 23 21 20 25 25 Si 1.86797 * 120.00096 * 180.02562 * 23 21 20 26 26 H 1.48501 * 109.47100 * 89.99699 * 25 23 21 27 27 H 1.48494 * 109.47103 * 209.99740 * 25 23 21 28 28 H 1.48504 * 109.46980 * 329.99880 * 25 23 21 29 29 C 1.38218 * 120.00137 * 179.97438 * 2 1 3 30 30 H 1.09003 * 109.46800 * 270.02147 * 1 2 3 31 31 H 1.08993 * 109.47522 * 30.01367 * 1 2 3 32 32 H 1.09004 * 109.47382 * 150.02004 * 1 2 3 33 33 H 1.08005 * 119.99431 * 0.02562 * 3 2 1 34 34 H 1.08002 * 120.00107 * 180.02562 * 4 3 2 35 35 H 1.08007 * 119.99748 * 180.23641 * 5 4 3 36 36 H 1.08994 * 109.47418 * 149.73165 * 7 6 5 37 37 H 1.09006 * 109.46868 * 29.72633 * 7 6 5 38 38 H 1.09003 * 109.46975 * 269.99637 * 11 10 8 39 39 H 1.08995 * 109.47277 * 29.99688 * 11 10 8 40 40 H 1.09003 * 109.46743 * 150.00175 * 11 10 8 41 41 H 1.09002 * 109.47153 * 299.99573 * 14 12 10 42 42 H 1.09001 * 109.46832 * 179.97438 * 14 12 10 43 43 H 1.09004 * 109.47261 * 59.99745 * 14 12 10 44 44 H 1.09001 * 109.47563 * 65.00613 * 15 12 10 45 45 H 1.09004 * 109.47313 * 185.00269 * 15 12 10 46 46 H 1.00895 * 110.99987 * 56.04684 * 16 15 12 47 47 H 1.09001 * 109.46813 * 299.99603 * 17 16 15 48 48 H 1.08993 * 109.47342 * 59.99787 * 17 16 15 49 49 H 0.97004 * 119.99872 * 359.97438 * 20 18 17 50 50 H 0.96992 * 119.99832 * 180.02562 * 24 23 21 51 51 H 1.07999 * 119.99514 * 359.97438 * 29 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1973 0.0000 4 6 3.5804 1.1973 0.0005 5 6 4.2716 0.0000 0.0050 6 6 3.5806 -1.1969 0.0001 7 6 4.3341 -2.5021 0.0006 8 6 4.5849 -2.9379 -1.4200 9 8 4.1902 -2.2561 -2.3421 10 7 5.2477 -4.0853 -1.6659 11 6 5.7239 -4.9093 -0.5520 12 6 5.4920 -4.5088 -3.0469 13 1 5.0683 -3.7747 -3.7323 14 6 4.8355 -5.8697 -3.2868 15 6 6.9989 -4.6199 -3.2873 16 7 7.6451 -3.3467 -2.9419 17 6 9.0960 -3.4162 -3.1612 18 6 9.7231 -2.0953 -2.7964 19 8 9.0294 -1.1854 -2.3938 20 7 11.0545 -1.9250 -2.9175 21 6 11.6249 -0.7232 -2.5861 22 1 11.0072 0.0870 -2.2276 23 6 12.9975 -0.5475 -2.7115 24 7 13.7491 -1.5336 -3.1472 25 14 13.7748 1.0898 -2.2593 26 1 14.1580 1.0764 -0.8246 27 1 14.9839 1.3106 -3.0926 28 1 12.8002 2.1839 -2.5011 29 6 2.1981 -1.1970 0.0005 30 1 -0.3633 0.0004 1.0277 31 1 -0.3634 0.8898 -0.5140 32 1 -0.3634 -0.8902 -0.5135 33 1 1.6583 2.1326 0.0004 34 1 4.1205 2.1327 0.0010 35 1 5.3517 0.0000 0.0092 36 1 3.7452 -3.2615 0.5150 37 1 5.2867 -2.3715 0.5141 38 1 6.7319 -4.5995 -0.2760 39 1 5.0588 -4.7846 0.3024 40 1 5.7355 -5.9566 -0.8538 41 1 5.2596 -6.6036 -2.6015 42 1 5.0169 -6.1845 -4.3145 43 1 3.7619 -5.7905 -3.1156 44 1 7.4084 -5.4157 -2.6651 45 1 7.1836 -4.8481 -4.3370 46 1 7.4351 -3.0807 -1.9916 47 1 9.5203 -4.2037 -2.5383 48 1 9.2949 -3.6358 -4.2101 49 1 11.6092 -2.6529 -3.2391 50 1 14.7073 -1.4111 -3.2344 51 1 1.6580 -2.1323 0.0014 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001666983174.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:16:46 Heat of formation + Delta-G solvation = -73.034968 kcal Electronic energy + Delta-G solvation = -30442.916483 eV Core-core repulsion = 26340.902669 eV Total energy + Delta-G solvation = -4102.013814 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.23 seconds Orbital eigenvalues (eV) -41.33299 -40.24561 -39.94900 -37.95706 -36.15655 -35.51101 -34.49936 -33.32373 -33.12331 -32.39949 -29.01032 -28.74790 -27.77254 -27.63765 -26.68104 -24.65075 -23.42733 -22.67803 -21.41944 -21.05622 -19.97757 -19.81760 -18.34988 -17.94597 -17.45371 -17.19787 -16.89701 -16.74510 -16.41387 -16.11111 -15.87582 -15.70809 -15.38851 -15.08319 -14.80934 -14.49838 -14.37811 -14.14019 -14.11730 -13.95847 -13.85086 -13.54822 -13.29979 -13.24470 -13.14250 -13.04034 -12.96486 -12.80467 -12.75282 -12.71403 -12.48065 -12.40950 -12.14369 -11.95332 -11.86555 -11.82229 -11.53630 -10.82260 -10.39832 -10.04167 -9.69679 -9.64432 -9.48346 -9.29071 -8.49189 -5.97960 0.40647 0.48842 1.35484 1.39374 1.52364 1.69776 2.02013 2.06505 2.27128 2.83966 2.90994 3.17708 3.47360 3.64706 3.79516 3.88401 4.00668 4.03921 4.19496 4.22699 4.24265 4.29447 4.34088 4.36577 4.45493 4.46317 4.53786 4.58179 4.63369 4.67025 4.68423 4.69994 4.79201 4.83926 4.85429 4.95197 4.98539 5.12710 5.18969 5.29612 5.30229 5.38224 5.55824 5.64199 5.66737 5.68801 5.87553 6.09854 6.13247 6.34562 6.44707 6.57848 7.10189 7.26644 7.53090 8.09314 8.68184 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.009396 B = 0.002657 C = 0.002151 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2979.265915 B =10536.038741 C =13016.949651 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C -0.097 4.097 3 C -0.132 4.132 4 C -0.130 4.130 5 C -0.136 4.136 6 C -0.073 4.073 7 C -0.095 4.095 8 C 0.512 3.488 9 O -0.577 6.577 10 N -0.610 5.610 11 C 0.065 3.935 12 C 0.136 3.864 13 H 0.069 0.931 14 C -0.146 4.146 15 C 0.053 3.947 16 N -0.687 5.687 17 C 0.067 3.933 18 C 0.435 3.565 19 O -0.625 6.625 20 N -0.571 5.571 21 C -0.334 4.334 22 H 0.075 0.925 23 C -0.012 4.012 24 N -0.918 5.918 25 Si 0.992 3.008 26 H -0.268 1.268 27 H -0.269 1.269 28 H -0.276 1.276 29 C -0.117 4.117 30 H 0.084 0.916 31 H 0.073 0.927 32 H 0.071 0.929 33 H 0.140 0.860 34 H 0.128 0.872 35 H 0.106 0.894 36 H 0.137 0.863 37 H 0.109 0.891 38 H 0.049 0.951 39 H 0.097 0.903 40 H 0.097 0.903 41 H 0.080 0.920 42 H 0.080 0.920 43 H 0.057 0.943 44 H 0.055 0.945 45 H 0.090 0.910 46 H 0.339 0.661 47 H 0.070 0.930 48 H 0.103 0.897 49 H 0.397 0.603 50 H 0.278 0.722 51 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.160 -11.434 8.140 26.231 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.097 4.097 3 C -0.149 4.149 4 C -0.148 4.148 5 C -0.154 4.154 6 C -0.074 4.074 7 C -0.134 4.134 8 C 0.301 3.699 9 O -0.456 6.456 10 N -0.343 5.343 11 C -0.077 4.077 12 C 0.033 3.967 13 H 0.088 0.912 14 C -0.205 4.205 15 C -0.076 4.076 16 N -0.320 5.320 17 C -0.066 4.066 18 C 0.222 3.778 19 O -0.511 6.511 20 N -0.209 5.209 21 C -0.464 4.464 22 H 0.093 0.907 23 C -0.212 4.212 24 N -0.559 5.559 25 Si 0.815 3.185 26 H -0.194 1.194 27 H -0.193 1.193 28 H -0.201 1.201 29 C -0.135 4.135 30 H 0.103 0.897 31 H 0.092 0.908 32 H 0.090 0.910 33 H 0.158 0.842 34 H 0.146 0.854 35 H 0.124 0.876 36 H 0.154 0.846 37 H 0.128 0.872 38 H 0.068 0.932 39 H 0.115 0.885 40 H 0.116 0.884 41 H 0.099 0.901 42 H 0.098 0.902 43 H 0.076 0.924 44 H 0.074 0.926 45 H 0.108 0.892 46 H 0.158 0.842 47 H 0.088 0.912 48 H 0.121 0.879 49 H 0.231 0.769 50 H 0.088 0.912 51 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -22.731 -10.231 7.272 25.966 hybrid contribution 1.612 0.263 0.466 1.699 sum -21.119 -9.968 7.738 24.602 Atomic orbital electron populations 1.20808 0.88997 1.03442 1.03283 1.20278 0.97700 0.92816 0.98899 1.21297 0.93828 0.98683 1.01127 1.21333 0.95255 0.98068 1.00101 1.21160 0.99652 0.93375 1.01219 1.19515 0.94246 0.94017 0.99604 1.20761 1.03012 0.96095 0.93581 1.20978 0.77018 0.80166 0.91710 1.90705 1.52598 1.54388 1.47868 1.47958 1.56109 1.22603 1.07635 1.22098 1.00047 0.96466 0.89096 1.21109 0.94452 0.98022 0.83157 0.91235 1.22010 1.00508 0.94361 1.03594 1.22435 0.93396 0.89414 1.02372 1.59961 1.07934 1.32323 1.31773 1.21535 0.88804 0.93157 1.03069 1.20938 0.82361 0.91252 0.83228 1.90507 1.62502 1.45563 1.52573 1.41913 1.06267 1.14204 1.58496 1.19626 0.91683 0.92074 1.42990 0.90681 1.26029 0.96013 1.02550 0.96579 1.69666 1.06789 1.33273 1.46202 0.84947 0.77625 0.77278 0.78605 1.19362 1.19336 1.20102 1.21080 0.92980 0.98610 1.00820 0.89723 0.90841 0.91019 0.84190 0.85395 0.87628 0.84556 0.87240 0.93213 0.88452 0.88442 0.90079 0.90153 0.92359 0.92648 0.89180 0.84195 0.91197 0.87872 0.76893 0.91222 0.84588 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.57 10.01 71.24 0.71 -0.85 16 2 C -0.10 -2.11 5.88 -19.86 -0.12 -2.23 16 3 C -0.13 -3.05 9.70 22.27 0.22 -2.84 16 4 C -0.13 -3.52 10.05 22.27 0.22 -3.30 16 5 C -0.14 -4.09 9.70 22.27 0.22 -3.88 16 6 C -0.07 -1.94 4.37 -19.87 -0.09 -2.03 16 7 C -0.10 -2.02 4.38 29.10 0.13 -1.90 16 8 C 0.51 14.35 7.67 87.66 0.67 15.02 16 9 O -0.58 -22.38 15.36 -3.04 -0.05 -22.43 16 10 N -0.61 -13.19 1.83 -822.59 -1.51 -14.69 16 11 C 0.06 0.83 9.38 127.77 1.20 2.03 16 12 C 0.14 3.08 2.95 44.99 0.13 3.21 16 13 H 0.07 2.16 6.90 -2.39 -0.02 2.14 16 14 C -0.15 -2.07 9.17 71.98 0.66 -1.41 16 15 C 0.05 1.23 5.03 86.30 0.43 1.67 16 16 N -0.69 -23.46 6.12 -517.94 -3.17 -26.63 16 17 C 0.07 2.37 6.17 85.56 0.53 2.90 16 18 C 0.43 21.59 7.82 87.66 0.69 22.28 16 19 O -0.62 -36.66 15.78 -3.07 -0.05 -36.71 16 20 N -0.57 -30.11 5.29 -307.00 -1.62 -31.73 16 21 C -0.33 -19.48 9.68 84.04 0.81 -18.67 16 22 H 0.08 4.71 7.16 -2.91 -0.02 4.69 16 23 C -0.01 -0.64 5.50 84.93 0.47 -0.18 16 24 N -0.92 -49.99 13.05 21.66 0.28 -49.71 16 25 Si 0.99 43.76 29.55 68.60 2.03 45.79 16 26 H -0.27 -11.37 7.11 99.48 0.71 -10.67 16 27 H -0.27 -11.16 7.11 99.48 0.71 -10.45 16 28 H -0.28 -12.40 7.11 99.48 0.71 -11.69 16 29 C -0.12 -2.71 9.36 22.27 0.21 -2.50 16 30 H 0.08 0.95 8.14 -2.39 -0.02 0.93 16 31 H 0.07 0.94 8.09 -2.39 -0.02 0.92 16 32 H 0.07 0.94 8.09 -2.38 -0.02 0.92 16 33 H 0.14 2.50 8.06 -2.91 -0.02 2.47 16 34 H 0.13 3.11 8.06 -2.91 -0.02 3.09 16 35 H 0.11 3.41 8.06 -2.91 -0.02 3.39 16 36 H 0.14 1.75 7.34 -2.39 -0.02 1.74 16 37 H 0.11 2.17 8.05 -2.38 -0.02 2.15 16 38 H 0.05 0.74 8.13 -2.39 -0.02 0.72 16 39 H 0.10 0.77 6.44 -2.39 -0.02 0.76 16 40 H 0.10 0.80 6.43 -2.39 -0.02 0.78 16 41 H 0.08 0.79 6.66 -2.39 -0.02 0.77 16 42 H 0.08 0.99 8.14 -2.39 -0.02 0.97 16 43 H 0.06 0.87 8.14 -2.38 -0.02 0.85 16 44 H 0.06 1.01 7.84 -2.39 -0.02 0.99 16 45 H 0.09 1.94 8.14 -2.39 -0.02 1.92 16 46 H 0.34 12.41 7.55 -89.70 -0.68 11.73 16 47 H 0.07 2.09 8.14 -2.39 -0.02 2.07 16 48 H 0.10 3.33 8.14 -2.39 -0.02 3.31 16 49 H 0.40 19.67 7.90 -92.70 -0.73 18.93 16 50 H 0.28 14.13 8.31 -92.71 -0.77 13.36 16 51 H 0.14 2.47 8.06 -2.91 -0.02 2.44 16 Total: -1.00 -82.10 421.09 2.54 -79.55 By element: Atomic # 1 Polarization: 49.70 SS G_CDS: -0.47 Total: 49.23 kcal Atomic # 6 Polarization: 0.23 SS G_CDS: 7.09 Total: 7.33 kcal Atomic # 7 Polarization: -116.74 SS G_CDS: -6.02 Total: -122.76 kcal Atomic # 8 Polarization: -59.05 SS G_CDS: -0.10 Total: -59.14 kcal Atomic # 14 Polarization: 43.76 SS G_CDS: 2.03 Total: 45.79 kcal Total: -82.10 2.54 -79.55 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001666983174.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.519 kcal (2) G-P(sol) polarization free energy of solvation -82.097 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.578 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.543 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.554 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.035 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.23 seconds