Wall clock time and date at job start Wed Apr 1 2020 05:00:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38359 * 119.92066 * 2 1 4 4 C 1.38368 * 120.29075 * 179.70207 * 3 2 1 5 5 C 1.50699 * 119.92871 * 180.27718 * 4 3 2 6 6 C 1.37956 * 120.13913 * 0.54882 * 4 3 2 7 7 C 1.39570 * 119.85708 * 359.45487 * 6 4 3 8 8 C 1.47852 * 120.14848 * 180.25072 * 7 6 4 9 9 O 1.21549 * 119.99737 * 140.83792 * 8 7 6 10 10 N 1.34774 * 119.99811 * 320.84407 * 8 7 6 11 11 C 1.46506 * 120.00124 * 4.86411 * 10 8 7 12 12 C 1.46496 * 119.99905 * 184.86837 * 10 8 7 13 13 H 1.08999 * 109.47500 * 359.97438 * 12 10 8 14 14 C 1.53004 * 109.47415 * 119.99925 * 12 10 8 15 15 C 1.53001 * 109.47034 * 239.99591 * 12 10 8 16 16 N 1.46903 * 109.47045 * 55.00093 * 15 12 10 17 17 C 1.46898 * 111.00226 * 180.02562 * 16 15 12 18 18 C 1.50697 * 109.47290 * 179.97438 * 17 16 15 19 19 O 1.21292 * 120.00221 * 359.97438 * 18 17 16 20 20 N 1.34781 * 119.99867 * 179.97438 * 18 17 16 21 21 C 1.37098 * 119.99664 * 179.97438 * 20 18 17 22 22 H 1.07994 * 120.00442 * 0.02562 * 21 20 18 23 23 C 1.38953 * 119.99889 * 180.02562 * 21 20 18 24 24 N 1.31409 * 120.00130 * 180.02562 * 23 21 20 25 25 Si 1.86807 * 119.99745 * 0.02562 * 23 21 20 26 26 H 1.48500 * 109.46686 * 90.00025 * 25 23 21 27 27 H 1.48503 * 109.46798 * 209.99804 * 25 23 21 28 28 H 1.48498 * 109.47300 * 329.99876 * 25 23 21 29 29 C 1.37954 * 119.93265 * 179.97438 * 2 1 3 30 30 H 1.09005 * 109.47277 * 270.02210 * 1 2 3 31 31 H 1.08996 * 109.47489 * 30.02621 * 1 2 3 32 32 H 1.08998 * 109.46443 * 150.02599 * 1 2 3 33 33 H 1.07996 * 119.85879 * 359.97438 * 3 2 1 34 34 H 1.08997 * 109.47078 * 270.27026 * 5 4 3 35 35 H 1.08998 * 109.47034 * 30.28128 * 5 4 3 36 36 H 1.09003 * 109.46638 * 150.27466 * 5 4 3 37 37 H 1.08007 * 120.07238 * 179.72131 * 6 4 3 38 38 H 1.09000 * 109.46951 * 85.51059 * 11 10 8 39 39 H 1.08996 * 109.46938 * 205.51658 * 11 10 8 40 40 H 1.09006 * 109.47018 * 325.51449 * 11 10 8 41 41 H 1.08999 * 109.47139 * 59.99347 * 14 12 10 42 42 H 1.08995 * 109.47380 * 180.02562 * 14 12 10 43 43 H 1.09005 * 109.46759 * 300.00019 * 14 12 10 44 44 H 1.09001 * 109.47511 * 174.99832 * 15 12 10 45 45 H 1.09002 * 109.47094 * 295.00150 * 15 12 10 46 46 H 1.00897 * 110.99796 * 303.95137 * 16 15 12 47 47 H 1.09000 * 109.46735 * 300.00325 * 17 16 15 48 48 H 1.09007 * 109.47159 * 59.99478 * 17 16 15 49 49 H 0.96998 * 119.99999 * 0.02562 * 20 18 17 50 50 H 0.97002 * 119.99695 * 179.97438 * 24 23 21 51 51 H 1.08003 * 120.07081 * 0.02562 * 29 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1972 1.1992 0.0000 4 6 3.5808 1.2081 0.0062 5 6 4.3242 2.5190 0.0125 6 6 4.2812 0.0196 0.0010 7 6 3.5911 -1.1936 0.0010 8 6 4.3353 -2.4712 0.0010 9 8 3.9359 -3.4071 0.6658 10 7 5.4566 -2.5979 -0.7359 11 6 5.9972 -1.4398 -1.4522 12 6 6.1347 -3.8936 -0.8208 13 1 5.5907 -4.6281 -0.2271 14 6 6.1812 -4.3504 -2.2803 15 6 7.5608 -3.7591 -0.2830 16 7 7.5209 -3.2069 1.0777 17 6 8.8755 -3.0628 1.6274 18 6 8.7945 -2.4944 3.0207 19 8 7.7145 -2.2344 3.5078 20 7 9.9221 -2.2749 3.7255 21 6 9.8484 -1.7573 4.9929 22 1 8.8868 -1.5258 5.4266 23 6 11.0109 -1.5305 5.7195 24 7 10.9402 -1.0348 6.9344 25 14 12.6742 -1.9302 4.9690 26 1 13.1898 -0.7401 4.2458 27 1 13.6256 -2.3058 6.0456 28 1 12.5295 -3.0624 4.0191 29 6 2.1954 -1.1955 0.0005 30 1 -0.3634 0.0004 1.0277 31 1 -0.3634 0.8897 -0.5142 32 1 -0.3632 -0.8902 -0.5134 33 1 1.6536 2.1324 -0.0004 34 1 4.5038 2.8397 -1.0136 35 1 3.7292 3.2716 0.5297 36 1 5.2774 2.3936 0.5261 37 1 5.3612 0.0279 0.0013 38 1 6.6369 -0.8647 -0.7827 39 1 6.5802 -1.7814 -2.3074 40 1 5.1767 -0.8118 -1.7992 41 1 6.7255 -3.6158 -2.8738 42 1 6.6853 -5.3147 -2.3435 43 1 5.1652 -4.4462 -2.6635 44 1 8.0358 -4.7400 -0.2632 45 1 8.1314 -3.0921 -0.9292 46 1 7.0279 -2.3267 1.0964 47 1 9.3599 -4.0387 1.6602 48 1 9.4549 -2.3907 0.9942 49 1 10.7858 -2.4824 3.3359 50 1 11.7518 -0.8768 7.4417 51 1 1.6554 -2.1309 0.0005 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001667038553.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:00:16 Heat of formation + Delta-G solvation = -62.867901 kcal Electronic energy + Delta-G solvation = -30820.528803 eV Core-core repulsion = 26718.955866 eV Total energy + Delta-G solvation = -4101.572937 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.66966 -40.36149 -39.83879 -38.02757 -36.23530 -35.66405 -34.52788 -33.82151 -33.66410 -31.99008 -29.13712 -28.32485 -28.19153 -27.41239 -26.64533 -25.21856 -24.36301 -22.03587 -21.64057 -21.30905 -20.37661 -20.06343 -18.30458 -17.94055 -17.54361 -17.28369 -17.05640 -16.72102 -16.52180 -16.14490 -15.66639 -15.50945 -15.18652 -14.95805 -14.81553 -14.62772 -14.36170 -14.32315 -14.22153 -14.06573 -14.02740 -13.91561 -13.40865 -13.26542 -13.15898 -13.10740 -12.98084 -12.81395 -12.79218 -12.55161 -12.50106 -12.43536 -12.37426 -11.99986 -11.98282 -11.82445 -11.53662 -10.91942 -10.49492 -10.27644 -9.85651 -9.69149 -9.55864 -9.30255 -8.43144 -6.04767 -0.06298 0.32449 1.28983 1.34405 1.44030 1.69977 1.92341 1.92690 2.21883 2.69370 2.69391 3.12872 3.32135 3.46289 3.78568 3.82556 3.90119 4.05216 4.10934 4.16874 4.20475 4.27810 4.32267 4.37762 4.38892 4.48068 4.52620 4.56217 4.63329 4.66671 4.69134 4.76670 4.80269 4.82991 4.85925 4.88193 4.97706 5.08786 5.14880 5.26359 5.28304 5.32206 5.48883 5.50635 5.55975 5.59037 5.88169 5.95000 6.04544 6.25337 6.33346 6.57785 6.85747 7.08506 7.36782 7.94599 8.74857 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.010698 B = 0.002720 C = 0.002378 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2616.692856 B =10291.183991 C =11773.030703 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.092 4.092 3 C -0.101 4.101 4 C -0.092 4.092 5 C -0.113 4.113 6 C -0.107 4.107 7 C -0.138 4.138 8 C 0.553 3.447 9 O -0.578 6.578 10 N -0.599 5.599 11 C 0.064 3.936 12 C 0.133 3.867 13 H 0.072 0.928 14 C -0.147 4.147 15 C 0.054 3.946 16 N -0.693 5.693 17 C 0.064 3.936 18 C 0.444 3.556 19 O -0.618 6.618 20 N -0.588 5.588 21 C -0.331 4.331 22 H 0.050 0.950 23 C -0.016 4.016 24 N -0.935 5.935 25 Si 0.968 3.032 26 H -0.253 1.253 27 H -0.275 1.275 28 H -0.231 1.231 29 C -0.095 4.095 30 H 0.074 0.926 31 H 0.089 0.911 32 H 0.071 0.929 33 H 0.153 0.847 34 H 0.092 0.908 35 H 0.079 0.921 36 H 0.062 0.938 37 H 0.138 0.862 38 H 0.057 0.943 39 H 0.104 0.896 40 H 0.085 0.915 41 H 0.082 0.918 42 H 0.087 0.913 43 H 0.054 0.946 44 H 0.099 0.901 45 H 0.061 0.939 46 H 0.337 0.663 47 H 0.115 0.885 48 H 0.083 0.917 49 H 0.391 0.609 50 H 0.280 0.720 51 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.673 3.266 -28.572 30.341 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.092 4.092 3 C -0.119 4.119 4 C -0.092 4.092 5 C -0.170 4.170 6 C -0.125 4.125 7 C -0.141 4.141 8 C 0.343 3.657 9 O -0.459 6.459 10 N -0.331 5.331 11 C -0.077 4.077 12 C 0.030 3.970 13 H 0.090 0.910 14 C -0.205 4.205 15 C -0.075 4.075 16 N -0.326 5.326 17 C -0.069 4.069 18 C 0.232 3.768 19 O -0.502 6.502 20 N -0.230 5.230 21 C -0.460 4.460 22 H 0.068 0.932 23 C -0.215 4.215 24 N -0.576 5.576 25 Si 0.788 3.212 26 H -0.177 1.177 27 H -0.200 1.200 28 H -0.154 1.154 29 C -0.114 4.114 30 H 0.093 0.907 31 H 0.107 0.893 32 H 0.090 0.910 33 H 0.171 0.829 34 H 0.110 0.890 35 H 0.098 0.902 36 H 0.081 0.919 37 H 0.156 0.844 38 H 0.076 0.924 39 H 0.122 0.878 40 H 0.103 0.897 41 H 0.100 0.900 42 H 0.106 0.894 43 H 0.073 0.927 44 H 0.117 0.883 45 H 0.079 0.921 46 H 0.156 0.844 47 H 0.133 0.867 48 H 0.101 0.899 49 H 0.227 0.773 50 H 0.089 0.911 51 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -10.586 2.396 -27.439 29.508 hybrid contribution 1.075 0.417 0.442 1.235 sum -9.511 2.813 -26.997 28.762 Atomic orbital electron populations 1.20845 0.88727 1.04085 1.03150 1.20163 0.97828 0.92148 0.99081 1.21449 0.93520 0.98464 0.98441 1.20200 0.94382 0.95762 0.98824 1.20857 0.99837 0.92551 1.03741 1.21616 1.00847 0.90969 0.99084 1.19879 0.94741 0.92858 1.06575 1.18775 0.80888 0.87557 0.78489 1.90757 1.69387 1.42654 1.43068 1.47814 1.25080 1.11978 1.48250 1.22347 1.00293 0.87727 0.97373 1.21258 0.92516 0.84668 0.98556 0.90954 1.22031 1.02781 1.03084 0.92619 1.22459 0.95985 1.01761 0.87302 1.59958 1.15446 1.34257 1.22915 1.21650 0.91794 1.02646 0.90767 1.21086 0.83649 0.82520 0.89520 1.90574 1.29983 1.56710 1.72958 1.42001 1.07843 1.58876 1.14305 1.18985 0.95103 1.40594 0.91318 0.93175 1.26177 1.03402 0.96131 0.95754 1.69815 1.31195 1.44586 1.11958 0.85322 0.76258 0.80428 0.79212 1.17743 1.19989 1.15433 1.21111 0.92292 0.98844 0.99113 0.90691 0.89262 0.91048 0.82910 0.88973 0.90191 0.91872 0.84410 0.92444 0.87809 0.89651 0.89965 0.89447 0.92691 0.88314 0.92104 0.84434 0.86664 0.89937 0.77342 0.91072 0.86342 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.52 10.01 71.24 0.71 -0.81 16 2 C -0.09 -1.84 5.87 -19.90 -0.12 -1.96 16 3 C -0.10 -1.79 9.35 22.33 0.21 -1.58 16 4 C -0.09 -1.78 5.87 -19.90 -0.12 -1.90 16 5 C -0.11 -1.59 10.01 71.24 0.71 -0.88 16 6 C -0.11 -2.51 7.21 22.52 0.16 -2.35 16 7 C -0.14 -3.85 5.24 -20.09 -0.11 -3.96 16 8 C 0.55 17.87 7.35 86.79 0.64 18.50 16 9 O -0.58 -24.30 16.25 -3.87 -0.06 -24.36 16 10 N -0.60 -14.32 1.83 -825.98 -1.51 -15.84 16 11 C 0.06 0.99 7.99 127.77 1.02 2.01 16 12 C 0.13 2.98 2.94 44.99 0.13 3.11 16 13 H 0.07 2.21 6.91 -2.39 -0.02 2.19 16 14 C -0.15 -1.99 9.18 71.98 0.66 -1.33 16 15 C 0.05 1.14 5.03 86.30 0.43 1.58 16 16 N -0.69 -22.61 6.12 -517.92 -3.17 -25.78 16 17 C 0.06 2.02 6.17 85.56 0.53 2.55 16 18 C 0.44 21.14 7.82 87.66 0.69 21.82 16 19 O -0.62 -36.89 15.78 -3.07 -0.05 -36.94 16 20 N -0.59 -28.59 5.09 -306.98 -1.56 -30.15 16 21 C -0.33 -19.98 10.16 84.04 0.85 -19.12 16 22 H 0.05 3.64 7.39 -2.91 -0.02 3.61 16 23 C -0.02 -0.91 5.50 84.93 0.47 -0.45 16 24 N -0.94 -57.42 13.96 21.66 0.30 -57.12 16 25 Si 0.97 39.05 27.74 68.60 1.90 40.96 16 26 H -0.25 -9.51 7.11 99.48 0.71 -8.80 16 27 H -0.27 -11.01 7.11 99.48 0.71 -10.31 16 28 H -0.23 -7.84 6.52 99.48 0.65 -7.19 16 29 C -0.09 -2.45 9.28 22.53 0.21 -2.24 16 30 H 0.07 1.01 8.14 -2.38 -0.02 0.99 16 31 H 0.09 0.82 8.08 -2.39 -0.02 0.80 16 32 H 0.07 0.92 8.08 -2.39 -0.02 0.90 16 33 H 0.15 1.77 8.06 -2.91 -0.02 1.75 16 34 H 0.09 0.91 8.14 -2.39 -0.02 0.89 16 35 H 0.08 0.95 8.09 -2.39 -0.02 0.93 16 36 H 0.06 1.00 8.08 -2.39 -0.02 0.98 16 37 H 0.14 2.99 5.30 -2.91 -0.02 2.98 16 38 H 0.06 0.92 6.89 -2.39 -0.02 0.90 16 39 H 0.10 0.97 6.43 -2.39 -0.02 0.95 16 40 H 0.09 1.24 5.82 -2.38 -0.01 1.22 16 41 H 0.08 0.75 6.66 -2.39 -0.02 0.73 16 42 H 0.09 0.94 8.14 -2.39 -0.02 0.92 16 43 H 0.05 0.84 8.14 -2.38 -0.02 0.82 16 44 H 0.10 1.80 8.14 -2.39 -0.02 1.78 16 45 H 0.06 0.93 7.84 -2.39 -0.02 0.91 16 46 H 0.34 12.25 7.56 -89.70 -0.68 11.57 16 47 H 0.12 3.09 8.14 -2.39 -0.02 3.07 16 48 H 0.08 2.01 8.14 -2.38 -0.02 1.99 16 49 H 0.39 15.48 5.76 -92.71 -0.53 14.94 16 50 H 0.28 15.62 8.31 -92.71 -0.77 14.85 16 51 H 0.12 3.16 8.05 -2.91 -0.02 3.13 16 Total: -1.00 -91.33 412.79 2.62 -88.71 By element: Atomic # 1 Polarization: 47.84 SS G_CDS: -0.31 Total: 47.53 kcal Atomic # 6 Polarization: 5.91 SS G_CDS: 7.09 Total: 13.00 kcal Atomic # 7 Polarization: -122.95 SS G_CDS: -5.94 Total: -128.89 kcal Atomic # 8 Polarization: -61.19 SS G_CDS: -0.11 Total: -61.30 kcal Atomic # 14 Polarization: 39.05 SS G_CDS: 1.90 Total: 40.96 kcal Total: -91.33 2.62 -88.71 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001667038553.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.839 kcal (2) G-P(sol) polarization free energy of solvation -91.329 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.490 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.622 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.707 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.868 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds