Wall clock time and date at job start Wed Apr 1 2020 05:00:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50692 * 1 3 3 C 1.38364 * 119.92606 * 2 1 4 4 C 1.38361 * 120.29191 * 180.02562 * 3 2 1 5 5 C 1.50702 * 119.92783 * 179.97438 * 4 3 2 6 6 C 1.37957 * 120.14700 * 359.97438 * 4 3 2 7 7 C 1.39583 * 119.85054 * 0.02562 * 6 4 3 8 8 C 1.47847 * 120.14305 * 179.97438 * 7 6 4 9 9 O 1.21549 * 119.99716 * 20.57447 * 8 7 6 10 10 N 1.34771 * 119.99622 * 200.57734 * 8 7 6 11 11 C 1.46501 * 120.00521 * 6.98392 * 10 8 7 12 12 C 1.46512 * 119.99680 * 186.98700 * 10 8 7 13 13 H 1.09000 * 109.46522 * 359.97438 * 12 10 8 14 14 C 1.52997 * 109.46968 * 239.99792 * 12 10 8 15 15 C 1.53002 * 109.47056 * 119.99964 * 12 10 8 16 16 N 1.46902 * 109.47019 * 305.00292 * 15 12 10 17 17 C 1.46901 * 110.99747 * 180.02562 * 16 15 12 18 18 C 1.50700 * 109.47029 * 179.97438 * 17 16 15 19 19 O 1.21302 * 119.99954 * 359.97438 * 18 17 16 20 20 N 1.34775 * 120.00487 * 179.97438 * 18 17 16 21 21 C 1.37092 * 120.00570 * 179.97438 * 20 18 17 22 22 H 1.08007 * 119.99913 * 0.02562 * 21 20 18 23 23 C 1.38945 * 120.00041 * 180.02562 * 21 20 18 24 24 N 1.31409 * 120.00426 * 359.97438 * 23 21 20 25 25 Si 1.86804 * 119.99945 * 180.02562 * 23 21 20 26 26 H 1.48499 * 109.47035 * 359.97438 * 25 23 21 27 27 H 1.48499 * 109.47472 * 119.99925 * 25 23 21 28 28 H 1.48504 * 109.47040 * 239.99909 * 25 23 21 29 29 C 1.37954 * 119.93067 * 180.25594 * 2 1 3 30 30 H 1.08996 * 109.47624 * 90.00011 * 1 2 3 31 31 H 1.09003 * 109.47403 * 210.00692 * 1 2 3 32 32 H 1.09010 * 109.47500 * 329.99744 * 1 2 3 33 33 H 1.07998 * 119.85566 * 359.97438 * 3 2 1 34 34 H 1.08994 * 109.46887 * 269.98171 * 5 4 3 35 35 H 1.09008 * 109.46927 * 29.97904 * 5 4 3 36 36 H 1.08995 * 109.47282 * 149.97305 * 5 4 3 37 37 H 1.08000 * 120.07491 * 180.02562 * 6 4 3 38 38 H 1.08991 * 109.47143 * 265.93705 * 11 10 8 39 39 H 1.09002 * 109.46882 * 25.94297 * 11 10 8 40 40 H 1.09000 * 109.46954 * 145.93743 * 11 10 8 41 41 H 1.09004 * 109.46999 * 60.00484 * 14 12 10 42 42 H 1.09005 * 109.47014 * 179.97438 * 14 12 10 43 43 H 1.08993 * 109.47394 * 300.00098 * 14 12 10 44 44 H 1.09001 * 109.47140 * 65.00110 * 15 12 10 45 45 H 1.08991 * 109.46850 * 185.00006 * 15 12 10 46 46 H 1.00903 * 111.00256 * 56.04331 * 16 15 12 47 47 H 1.09004 * 109.47004 * 299.99165 * 17 16 15 48 48 H 1.08993 * 109.47224 * 59.99889 * 17 16 15 49 49 H 0.97007 * 119.99466 * 0.02562 * 20 18 17 50 50 H 0.97005 * 120.00217 * 179.97438 * 24 23 21 51 51 H 1.08005 * 120.07160 * 0.02562 * 29 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1972 1.1992 0.0000 4 6 3.5808 1.2080 -0.0005 5 6 4.3243 2.5188 -0.0011 6 6 4.2812 0.0195 -0.0005 7 6 3.5910 -1.1938 -0.0005 8 6 4.3351 -2.4713 -0.0011 9 8 5.4928 -2.5004 0.3684 10 7 3.7299 -3.6034 -0.4114 11 6 2.3894 -3.5457 -0.9995 12 6 4.4126 -4.8919 -0.2691 13 1 5.3914 -4.7362 0.1846 14 6 4.5860 -5.5321 -1.6478 15 6 3.5783 -5.8155 0.6208 16 7 3.3106 -5.1497 1.9026 17 6 2.5104 -6.0093 2.7852 18 6 2.2569 -5.2946 4.0875 19 8 2.6998 -4.1791 4.2634 20 7 1.5382 -5.8948 5.0569 21 6 1.3081 -5.2449 6.2418 22 1 1.7024 -4.2516 6.3984 23 6 0.5676 -5.8639 7.2413 24 7 0.0873 -7.0722 7.0507 25 14 0.2534 -4.9780 8.8557 26 1 0.8963 -3.6399 8.8192 27 1 -1.2093 -4.8196 9.0569 28 1 0.8240 -5.7706 9.9744 29 6 2.1952 -1.1955 -0.0053 30 1 -0.3634 0.0000 -1.0276 31 1 -0.3634 -0.8899 0.5139 32 1 -0.3634 0.8900 0.5139 33 1 1.6536 2.1324 -0.0004 34 1 4.5034 2.8344 -1.0289 35 1 3.7294 3.2742 0.5125 36 1 5.2776 2.3961 0.5128 37 1 5.3612 0.0277 -0.0005 38 1 1.6443 -3.7200 -0.2234 39 1 2.2292 -2.5630 -1.4430 40 1 2.2974 -4.3113 -1.7699 41 1 5.1804 -4.8741 -2.2818 42 1 5.0943 -6.4906 -1.5420 43 1 3.6074 -5.6876 -2.1019 44 1 2.6345 -6.0425 0.1251 45 1 4.1266 -6.7405 0.7993 46 1 2.8600 -4.2582 1.7599 47 1 1.5590 -6.2379 2.3047 48 1 3.0516 -6.9353 2.9787 49 1 1.1844 -6.7870 4.9164 50 1 -0.4293 -7.5045 7.7486 51 1 1.6553 -2.1309 -0.0099 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001667038554.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:00:22 Heat of formation + Delta-G solvation = -30.128215 kcal Electronic energy + Delta-G solvation = -30927.649333 eV Core-core repulsion = 26827.496095 eV Total energy + Delta-G solvation = -4100.153237 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -40.74920 -38.98859 -38.20400 -36.84752 -34.81827 -33.91202 -33.60255 -32.77512 -31.22300 -31.02157 -27.76867 -27.57627 -27.45414 -26.50249 -25.04838 -24.13378 -23.10324 -21.16655 -20.75810 -19.36838 -19.08416 -17.86510 -17.24399 -16.74075 -16.33606 -16.14211 -15.71788 -15.28409 -15.17816 -14.50451 -14.43008 -14.23543 -14.12615 -13.88052 -13.67399 -13.53676 -13.45156 -13.40183 -13.15387 -12.98047 -12.75694 -12.60820 -12.41296 -12.19639 -12.09084 -11.87097 -11.75442 -11.59983 -11.56901 -11.47234 -11.38978 -11.09014 -10.99619 -10.83933 -10.32469 -10.20217 -9.79657 -9.49643 -8.93444 -8.79178 -8.67629 -8.39288 -8.01366 -7.92951 -6.39723 -3.80168 0.81265 1.20661 2.80983 2.86676 3.17781 3.28171 3.36119 3.68243 3.93585 4.08796 4.28161 4.42143 4.57061 4.59052 4.78526 4.85821 4.98158 5.00070 5.10600 5.12579 5.17496 5.19236 5.24367 5.27613 5.30812 5.34163 5.39272 5.41227 5.42485 5.44922 5.56075 5.60847 5.65080 5.68632 5.79186 5.87487 5.90071 5.97945 5.99693 6.06009 6.19592 6.28833 6.32328 6.39927 6.49830 6.79237 7.24261 7.29580 7.57692 7.68357 8.09241 8.17626 8.64192 9.20703 9.56894 10.09002 10.78231 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.008932 B = 0.002953 C = 0.002462 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3134.141068 B = 9479.086641 C =11371.424127 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.091 4.091 3 C -0.098 4.098 4 C -0.094 4.094 5 C -0.113 4.113 6 C -0.068 4.068 7 C -0.121 4.121 8 C 0.566 3.434 9 O -0.526 6.526 10 N -0.606 5.606 11 C 0.061 3.939 12 C 0.138 3.862 13 H 0.111 0.889 14 C -0.159 4.159 15 C 0.050 3.950 16 N -0.665 5.665 17 C 0.051 3.949 18 C 0.440 3.560 19 O -0.579 6.579 20 N -0.565 5.565 21 C -0.297 4.297 22 H 0.103 0.897 23 C 0.021 3.979 24 N -0.903 5.903 25 Si 0.928 3.072 26 H -0.268 1.268 27 H -0.282 1.282 28 H -0.281 1.281 29 C -0.111 4.111 30 H 0.070 0.930 31 H 0.070 0.930 32 H 0.068 0.932 33 H 0.124 0.876 34 H 0.070 0.930 35 H 0.067 0.933 36 H 0.069 0.931 37 H 0.132 0.868 38 H 0.060 0.940 39 H 0.089 0.911 40 H 0.071 0.929 41 H 0.061 0.939 42 H 0.070 0.930 43 H 0.058 0.942 44 H 0.028 0.972 45 H 0.083 0.917 46 H 0.348 0.652 47 H 0.041 0.959 48 H 0.086 0.914 49 H 0.392 0.608 50 H 0.270 0.730 51 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.355 9.278 -22.266 24.160 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.091 4.091 3 C -0.117 4.117 4 C -0.094 4.094 5 C -0.170 4.170 6 C -0.086 4.086 7 C -0.124 4.124 8 C 0.355 3.645 9 O -0.403 6.403 10 N -0.340 5.340 11 C -0.082 4.082 12 C 0.035 3.965 13 H 0.129 0.871 14 C -0.217 4.217 15 C -0.081 4.081 16 N -0.298 5.298 17 C -0.082 4.082 18 C 0.226 3.774 19 O -0.463 6.463 20 N -0.202 5.202 21 C -0.426 4.426 22 H 0.121 0.879 23 C -0.180 4.180 24 N -0.545 5.545 25 Si 0.755 3.245 26 H -0.192 1.192 27 H -0.208 1.208 28 H -0.207 1.207 29 C -0.129 4.129 30 H 0.089 0.911 31 H 0.089 0.911 32 H 0.087 0.913 33 H 0.142 0.858 34 H 0.088 0.912 35 H 0.086 0.914 36 H 0.088 0.912 37 H 0.150 0.850 38 H 0.078 0.922 39 H 0.107 0.893 40 H 0.090 0.910 41 H 0.080 0.920 42 H 0.089 0.911 43 H 0.077 0.923 44 H 0.046 0.954 45 H 0.102 0.898 46 H 0.167 0.833 47 H 0.059 0.941 48 H 0.105 0.895 49 H 0.225 0.775 50 H 0.080 0.920 51 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges 2.764 9.705 -21.528 23.776 hybrid contribution -1.488 -0.327 0.453 1.590 sum 1.276 9.378 -21.075 23.102 Atomic orbital electron populations 1.20804 0.90708 1.03390 1.02260 1.19871 0.96350 0.92804 1.00104 1.21107 0.93509 0.97712 0.99338 1.19845 0.93788 0.95276 1.00491 1.20784 1.00223 0.93659 1.02290 1.21087 1.00363 0.90429 0.96769 1.19851 0.93722 0.93441 1.05365 1.18278 0.86122 0.83341 0.76753 1.90764 1.16703 1.85837 1.46959 1.47664 1.17678 1.06759 1.61915 1.22434 0.83730 1.03782 0.98247 1.21201 0.98275 0.81741 0.95306 0.87069 1.22099 1.02089 1.01212 0.96329 1.22346 0.98400 0.97473 0.89865 1.59980 1.51826 1.06112 1.11848 1.21684 0.95855 0.96983 0.93669 1.19828 0.83878 0.87945 0.85778 1.90552 1.54227 1.20262 1.81228 1.41863 1.46857 1.17753 1.13736 1.19755 1.30662 1.01564 0.90659 0.87915 1.25247 0.96907 0.95974 0.99853 1.69621 1.36439 1.13359 1.35054 0.85815 0.77952 0.79522 0.81164 1.19205 1.20781 1.20733 1.22113 0.93317 0.99359 0.98134 0.91142 0.91106 0.91347 0.85849 0.91181 0.91409 0.91243 0.85034 0.92213 0.89303 0.91016 0.92026 0.91073 0.92338 0.95356 0.89833 0.83253 0.94105 0.89542 0.77516 0.91977 0.83459 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.93 10.01 36.00 0.36 -0.57 16 2 C -0.09 -0.96 5.87 -104.68 -0.61 -1.58 16 3 C -0.10 -1.00 9.35 -39.49 -0.37 -1.37 16 4 C -0.09 -1.02 5.87 -104.68 -0.61 -1.63 16 5 C -0.11 -0.91 10.01 36.01 0.36 -0.55 16 6 C -0.07 -0.87 9.24 -39.18 -0.36 -1.24 16 7 C -0.12 -1.65 5.57 -104.96 -0.58 -2.24 16 8 C 0.57 8.68 7.52 -12.33 -0.09 8.59 16 9 O -0.53 -9.95 15.88 5.32 0.08 -9.87 16 10 N -0.61 -7.45 1.83 -175.04 -0.32 -7.77 16 11 C 0.06 0.53 7.81 59.85 0.47 1.00 16 12 C 0.14 1.66 2.94 -67.92 -0.20 1.46 16 13 H 0.11 1.66 6.92 -51.93 -0.36 1.30 16 14 C -0.16 -1.37 9.16 37.16 0.34 -1.03 16 15 C 0.05 0.62 5.03 -3.82 -0.02 0.60 16 16 N -0.66 -11.55 6.12 -115.06 -0.70 -12.25 16 17 C 0.05 0.93 6.17 -4.98 -0.03 0.90 16 18 C 0.44 10.78 7.82 -10.99 -0.09 10.69 16 19 O -0.58 -16.50 15.78 5.54 0.09 -16.41 16 20 N -0.57 -14.64 5.29 -10.96 -0.06 -14.70 16 21 C -0.30 -8.46 9.68 -14.94 -0.14 -8.60 16 22 H 0.10 3.10 7.16 -52.48 -0.38 2.72 16 23 C 0.02 0.58 5.50 -17.47 -0.10 0.49 16 24 N -0.90 -24.85 13.05 55.50 0.72 -24.13 16 25 Si 0.93 21.41 29.55 -169.99 -5.02 16.39 16 26 H -0.27 -6.21 7.11 56.52 0.40 -5.81 16 27 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 28 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 29 C -0.11 -1.30 7.26 -39.19 -0.28 -1.59 16 30 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 31 H 0.07 0.59 8.09 -51.93 -0.42 0.17 16 32 H 0.07 0.51 8.09 -51.92 -0.42 0.09 16 33 H 0.12 0.97 8.06 -52.49 -0.42 0.55 16 34 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 35 H 0.07 0.47 8.08 -51.92 -0.42 0.05 16 36 H 0.07 0.55 8.08 -51.93 -0.42 0.13 16 37 H 0.13 1.70 7.79 -52.49 -0.41 1.29 16 38 H 0.06 0.53 6.98 -51.93 -0.36 0.17 16 39 H 0.09 0.71 5.22 -51.93 -0.27 0.44 16 40 H 0.07 0.49 6.44 -51.93 -0.33 0.15 16 41 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 42 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 43 H 0.06 0.42 6.68 -51.93 -0.35 0.08 16 44 H 0.03 0.31 7.84 -51.93 -0.41 -0.10 16 45 H 0.08 0.98 8.14 -51.93 -0.42 0.55 16 46 H 0.35 6.41 7.51 -39.29 -0.30 6.12 16 47 H 0.04 0.66 8.14 -51.93 -0.42 0.24 16 48 H 0.09 1.46 8.14 -51.93 -0.42 1.04 16 49 H 0.39 9.65 7.90 -40.82 -0.32 9.33 16 50 H 0.27 7.01 8.31 -40.82 -0.34 6.68 16 51 H 0.15 1.52 4.05 -52.48 -0.21 1.31 16 LS Contribution 413.82 15.07 6.24 6.24 Total: -1.00 -35.48 413.82 -8.84 -44.31 By element: Atomic # 1 Polarization: 22.76 SS G_CDS: -7.89 Total: 14.86 kcal Atomic # 6 Polarization: 5.31 SS G_CDS: -1.97 Total: 3.34 kcal Atomic # 7 Polarization: -58.50 SS G_CDS: -0.36 Total: -58.86 kcal Atomic # 8 Polarization: -26.45 SS G_CDS: 0.17 Total: -26.28 kcal Atomic # 14 Polarization: 21.41 SS G_CDS: -5.02 Total: 16.39 kcal Total LS contribution 6.24 Total: 6.24 kcal Total: -35.48 -8.84 -44.31 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001667038554.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.186 kcal (2) G-P(sol) polarization free energy of solvation -35.478 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.292 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.836 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.314 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.128 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds