Wall clock time and date at job start Wed Apr 1 2020 05:44:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38294 * 119.92245 * 2 1 4 4 C 1.38094 * 120.07458 * 179.97438 * 3 2 1 5 5 C 1.38931 * 119.92548 * 359.97438 * 4 3 2 6 6 N 1.39724 * 120.07705 * 179.97438 * 5 4 3 7 7 C 1.34770 * 120.00274 * 35.08969 * 6 5 4 8 8 O 1.21385 * 119.99934 * 355.38449 * 7 6 5 9 9 C 1.49353 * 120.00380 * 175.38088 * 7 6 5 10 10 O 1.21356 * 119.99865 * 0.02562 * 9 7 6 11 11 N 1.34770 * 120.00380 * 179.97438 * 9 7 6 12 12 C 1.46500 * 120.00328 * 180.02562 * 11 9 7 13 13 H 1.09002 * 109.47101 * 35.00453 * 12 11 9 14 14 C 1.53001 * 109.47299 * 154.99889 * 12 11 9 15 15 N 1.46498 * 109.47273 * 305.00519 * 14 12 11 16 16 C 1.36937 * 119.99945 * 179.72097 * 15 14 12 17 17 H 1.08005 * 120.00013 * 0.27775 * 16 15 14 18 18 C 1.38811 * 120.00027 * 180.27155 * 16 15 14 19 19 N 1.31619 * 120.00155 * 0.02562 * 18 16 15 20 20 Si 1.86805 * 119.99951 * 180.02562 * 18 16 15 21 21 H 1.48490 * 109.47169 * 90.00243 * 20 18 16 22 22 H 1.48503 * 109.46992 * 210.00142 * 20 18 16 23 23 H 1.48502 * 109.46872 * 329.99856 * 20 18 16 24 24 C 1.52998 * 109.47316 * 275.00115 * 12 11 9 25 25 C 1.53001 * 109.46599 * 64.99883 * 24 12 11 26 26 C 1.52997 * 109.47413 * 65.00450 * 25 24 12 27 27 C 1.53004 * 109.47008 * 184.99857 * 25 24 12 28 28 C 1.38927 * 119.84672 * 0.24560 * 5 4 3 29 29 C 1.38097 * 119.92087 * 359.52130 * 28 5 4 30 30 H 1.08997 * 109.47277 * 89.99482 * 1 2 3 31 31 H 1.09002 * 109.47263 * 209.99974 * 1 2 3 32 32 H 1.09001 * 109.46800 * 329.99549 * 1 2 3 33 33 H 1.08002 * 119.96217 * 359.97438 * 3 2 1 34 34 H 1.08000 * 120.03629 * 179.97438 * 4 3 2 35 35 H 0.96998 * 119.99887 * 215.09890 * 6 5 4 36 36 H 0.97002 * 120.00054 * 0.02562 * 11 9 7 37 37 H 1.09001 * 109.47213 * 184.99992 * 14 12 11 38 38 H 1.09004 * 109.47012 * 65.00260 * 14 12 11 39 39 H 0.96994 * 120.00049 * 359.97438 * 15 14 12 40 40 H 0.96996 * 120.00139 * 179.97438 * 19 18 16 41 41 H 1.09003 * 109.46985 * 184.99681 * 24 12 11 42 42 H 1.08994 * 109.47367 * 305.00237 * 24 12 11 43 43 H 1.08997 * 109.47473 * 304.99400 * 25 24 12 44 44 H 1.08997 * 109.47658 * 59.99064 * 26 25 24 45 45 H 1.08997 * 109.47380 * 180.02562 * 26 25 24 46 46 H 1.09003 * 109.47035 * 299.99440 * 26 25 24 47 47 H 1.09008 * 109.46677 * 59.99893 * 27 25 24 48 48 H 1.08990 * 109.47357 * 180.02562 * 27 25 24 49 49 H 1.08999 * 109.47433 * 300.00507 * 27 25 24 50 50 H 1.07996 * 120.04231 * 179.72729 * 28 5 4 51 51 H 1.08004 * 119.95790 * 180.20816 * 29 28 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1969 1.1986 0.0000 4 6 3.5778 1.2023 0.0005 5 6 4.2741 0.0000 0.0016 6 7 5.6713 0.0000 0.0016 7 6 6.3452 0.9556 0.6717 8 8 5.7413 1.8635 1.2050 9 6 7.8351 0.8976 0.7582 10 8 8.4390 -0.0098 0.2247 11 7 8.5090 1.8535 1.4278 12 6 9.9705 1.7968 1.5122 13 1 10.3727 1.3924 0.5833 14 6 10.5234 3.2057 1.7365 15 7 10.0332 4.0964 0.6817 16 6 10.3944 5.4172 0.6782 17 1 11.0443 5.8014 1.4506 18 6 9.9254 6.2624 -0.3181 19 7 9.1331 5.7944 -1.2591 20 14 10.4187 8.0641 -0.3232 21 1 11.6657 8.2337 -1.1113 22 1 9.3333 8.8728 -0.9341 23 1 10.6491 8.5182 1.0718 24 6 10.3795 0.8966 2.6798 25 6 9.9344 -0.5395 2.3965 26 6 10.6948 -1.0794 1.1836 27 6 10.2312 -1.4153 3.6155 28 6 3.5779 -1.2022 -0.0030 29 6 2.1969 -1.1985 0.0013 30 1 -0.3634 0.0001 -1.0276 31 1 -0.3634 -0.8900 0.5138 32 1 -0.3633 0.8900 0.5139 33 1 1.6550 2.1328 -0.0004 34 1 4.1159 2.1387 0.0001 35 1 6.1563 -0.6877 -0.4808 36 1 8.0264 2.5790 1.8540 37 1 11.6128 3.1769 1.7106 38 1 10.1927 3.5756 2.7070 39 1 9.4499 3.7513 -0.0122 40 1 8.8051 6.3850 -1.9551 41 1 11.4627 0.9247 2.7980 42 1 9.9047 1.2503 3.5949 43 1 8.8641 -0.5544 2.1905 44 1 11.7650 -1.0646 1.3896 45 1 10.3774 -2.1023 0.9815 46 1 10.4833 -0.4556 0.3151 47 1 9.6894 -1.0306 4.4797 48 1 9.9146 -2.4384 3.4136 49 1 11.3014 -1.4005 3.8217 50 1 4.1159 -2.1386 -0.0066 51 1 1.6551 -2.1328 0.0011 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001667117889.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:44:53 Heat of formation + Delta-G solvation = -41.229360 kcal Electronic energy + Delta-G solvation = -30874.869661 eV Core-core repulsion = 26774.235042 eV Total energy + Delta-G solvation = -4100.634619 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.06774 -39.76290 -38.46586 -36.81274 -35.39505 -34.96212 -33.47442 -31.71615 -31.24765 -31.06428 -29.29863 -27.11734 -26.93157 -25.63224 -24.54284 -23.14532 -22.81056 -21.57654 -20.71640 -20.15249 -19.80102 -18.69520 -17.52311 -17.07897 -16.61778 -16.14542 -15.60262 -15.51320 -15.40615 -14.82031 -14.51106 -14.20378 -13.99818 -13.89951 -13.84577 -13.68394 -13.56206 -13.25149 -13.06700 -12.93796 -12.51507 -12.30966 -12.19060 -12.15922 -12.06180 -11.93727 -11.61261 -11.38038 -11.15057 -11.12539 -10.97064 -10.83115 -10.61451 -10.35991 -10.32650 -10.29474 -10.03643 -9.75226 -9.41666 -9.04419 -8.94563 -8.82458 -8.17700 -6.98741 -5.79171 -3.09538 0.96672 1.28296 1.65367 2.39602 3.28503 3.42473 3.47493 3.49416 3.65496 3.70589 4.51025 4.57226 4.67468 4.73958 4.87390 4.88760 5.08238 5.09102 5.09719 5.25014 5.36670 5.40725 5.45575 5.53731 5.55952 5.59484 5.63367 5.70659 5.78900 5.86653 5.88292 5.94421 6.02047 6.05325 6.13275 6.14484 6.17389 6.19933 6.33365 6.35014 6.38070 6.48074 6.55627 6.57199 6.70788 6.75856 6.88397 7.02579 7.51630 7.66829 7.81198 8.16583 8.38059 9.50009 10.04410 10.39348 11.43022 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.007708 B = 0.003211 C = 0.002371 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3631.602791 B = 8718.627313 C =11808.717659 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.104 4.104 3 C -0.102 4.102 4 C -0.114 4.114 5 C 0.138 3.862 6 N -0.649 5.649 7 C 0.507 3.493 8 O -0.494 6.494 9 C 0.509 3.491 10 O -0.518 6.518 11 N -0.672 5.672 12 C 0.134 3.866 13 H 0.096 0.904 14 C 0.143 3.857 15 N -0.731 5.731 16 C -0.244 4.244 17 H 0.071 0.929 18 C -0.011 4.011 19 N -0.930 5.930 20 Si 0.908 3.092 21 H -0.290 1.290 22 H -0.291 1.291 23 H -0.282 1.282 24 C -0.124 4.124 25 C -0.094 4.094 26 C -0.139 4.139 27 C -0.146 4.146 28 C -0.138 4.138 29 C -0.104 4.104 30 H 0.068 0.932 31 H 0.064 0.936 32 H 0.065 0.935 33 H 0.126 0.874 34 H 0.143 0.857 35 H 0.422 0.578 36 H 0.416 0.584 37 H 0.037 0.963 38 H 0.026 0.974 39 H 0.385 0.615 40 H 0.256 0.744 41 H 0.075 0.925 42 H 0.065 0.935 43 H 0.070 0.930 44 H 0.041 0.959 45 H 0.044 0.956 46 H 0.075 0.925 47 H 0.048 0.952 48 H 0.049 0.951 49 H 0.051 0.949 50 H 0.127 0.873 51 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.802 -17.978 5.246 21.620 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.104 4.104 3 C -0.120 4.120 4 C -0.134 4.134 5 C 0.045 3.955 6 N -0.296 5.296 7 C 0.290 3.710 8 O -0.366 6.366 9 C 0.289 3.711 10 O -0.395 6.395 11 N -0.324 5.324 12 C 0.030 3.970 13 H 0.114 0.886 14 C 0.015 3.985 15 N -0.376 5.376 16 C -0.375 4.375 17 H 0.089 0.911 18 C -0.207 4.207 19 N -0.578 5.578 20 Si 0.739 3.261 21 H -0.217 1.217 22 H -0.218 1.218 23 H -0.207 1.207 24 C -0.163 4.163 25 C -0.112 4.112 26 C -0.196 4.196 27 C -0.204 4.204 28 C -0.159 4.159 29 C -0.123 4.123 30 H 0.087 0.913 31 H 0.083 0.917 32 H 0.084 0.916 33 H 0.144 0.856 34 H 0.161 0.839 35 H 0.260 0.740 36 H 0.253 0.747 37 H 0.055 0.945 38 H 0.044 0.956 39 H 0.219 0.781 40 H 0.065 0.935 41 H 0.094 0.906 42 H 0.084 0.916 43 H 0.089 0.911 44 H 0.060 0.940 45 H 0.063 0.937 46 H 0.094 0.906 47 H 0.068 0.932 48 H 0.068 0.932 49 H 0.070 0.930 50 H 0.144 0.856 51 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -10.633 -17.770 5.335 21.384 hybrid contribution 0.125 0.956 -0.331 1.020 sum -10.508 -16.814 5.004 20.449 Atomic orbital electron populations 1.20761 0.91200 1.02675 1.02211 1.19941 0.96157 0.93166 1.01162 1.20978 0.93564 0.97743 0.99735 1.21401 0.94303 0.98099 0.99582 1.17753 0.81926 0.94328 1.01541 1.43108 1.04788 1.30874 1.50781 1.20542 0.89280 0.82247 0.78979 1.90792 1.69593 1.32258 1.43996 1.19656 0.87211 0.83576 0.80658 1.90753 1.68855 1.34244 1.45666 1.45802 1.08175 1.26433 1.51980 1.21579 0.78114 0.97297 1.00018 0.88586 1.20988 0.97068 0.87142 0.93266 1.42332 1.59195 1.06666 1.29431 1.19191 1.24439 0.85279 1.08610 0.91085 1.24758 1.00017 0.98282 0.97660 1.69662 1.37444 1.34886 1.15768 0.86182 0.77498 0.85011 0.77411 1.21716 1.21761 1.20735 1.22048 1.01679 0.94562 0.97974 1.21150 1.01019 0.93998 0.95045 1.21847 0.98239 1.00804 0.98760 1.21863 1.01216 0.99412 0.97870 1.20896 0.94531 0.96377 1.04047 1.20780 0.93186 0.97628 1.00709 0.91282 0.91703 0.91567 0.85604 0.83933 0.74045 0.74668 0.94521 0.95588 0.78061 0.93460 0.90617 0.91644 0.91126 0.94022 0.93707 0.90586 0.93243 0.93182 0.92961 0.85554 0.85737 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.78 10.01 36.01 0.36 -0.42 16 2 C -0.10 -1.02 5.88 -104.58 -0.62 -1.63 16 3 C -0.10 -1.16 9.69 -39.61 -0.38 -1.54 16 4 C -0.11 -1.54 8.70 -39.38 -0.34 -1.89 16 5 C 0.14 1.74 6.30 -83.75 -0.53 1.21 16 6 N -0.65 -8.18 5.32 -10.30 -0.05 -8.24 16 7 C 0.51 7.72 7.73 -11.63 -0.09 7.63 16 8 O -0.49 -8.64 13.91 5.47 0.08 -8.56 16 9 C 0.51 7.90 6.44 -11.63 -0.07 7.82 16 10 O -0.52 -8.08 11.44 5.49 0.06 -8.02 16 11 N -0.67 -10.73 4.46 -54.27 -0.24 -10.97 16 12 C 0.13 2.11 2.33 -67.93 -0.16 1.95 16 13 H 0.10 1.65 5.92 -51.93 -0.31 1.34 16 14 C 0.14 2.70 5.82 -4.04 -0.02 2.68 16 15 N -0.73 -17.90 5.43 -59.91 -0.33 -18.22 16 16 C -0.24 -6.70 9.99 -15.06 -0.15 -6.85 16 17 H 0.07 1.88 7.83 -52.48 -0.41 1.47 16 18 C -0.01 -0.31 5.50 -17.43 -0.10 -0.40 16 19 N -0.93 -28.03 13.06 55.49 0.72 -27.30 16 20 Si 0.91 22.33 29.55 -169.99 -5.02 17.31 16 21 H -0.29 -7.11 7.11 56.52 0.40 -6.70 16 22 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 23 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 24 C -0.12 -1.60 4.36 -26.73 -0.12 -1.71 16 25 C -0.09 -1.18 2.38 -90.62 -0.22 -1.39 16 26 C -0.14 -1.80 8.03 37.16 0.30 -1.50 16 27 C -0.15 -1.57 9.19 37.16 0.34 -1.23 16 28 C -0.14 -1.41 9.97 -39.38 -0.39 -1.80 16 29 C -0.10 -0.97 9.69 -39.61 -0.38 -1.35 16 30 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 31 H 0.06 0.38 8.08 -51.93 -0.42 -0.04 16 32 H 0.07 0.43 8.08 -51.93 -0.42 0.01 16 33 H 0.13 1.23 8.06 -52.49 -0.42 0.81 16 34 H 0.14 2.22 6.22 -52.49 -0.33 1.89 16 35 H 0.42 4.49 8.30 -40.82 -0.34 4.15 16 36 H 0.42 7.00 8.07 -40.82 -0.33 6.67 16 37 H 0.04 0.69 8.14 -51.93 -0.42 0.27 16 38 H 0.03 0.49 8.14 -51.93 -0.42 0.06 16 39 H 0.39 10.10 7.33 -40.82 -0.30 9.80 16 40 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 41 H 0.08 0.91 8.14 -51.93 -0.42 0.49 16 42 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 43 H 0.07 0.99 5.19 -51.93 -0.27 0.72 16 44 H 0.04 0.49 8.14 -51.93 -0.42 0.07 16 45 H 0.04 0.55 8.14 -51.93 -0.42 0.13 16 46 H 0.08 1.13 4.76 -51.93 -0.25 0.88 16 47 H 0.05 0.51 8.14 -51.92 -0.42 0.09 16 48 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 49 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 50 H 0.13 1.00 8.06 -52.49 -0.42 0.58 16 51 H 0.12 0.85 8.06 -52.48 -0.42 0.42 16 LS Contribution 410.20 15.07 6.18 6.18 Total: -1.00 -31.40 410.20 -9.17 -40.57 By element: Atomic # 1 Polarization: 25.68 SS G_CDS: -8.00 Total: 17.68 kcal Atomic # 6 Polarization: 2.15 SS G_CDS: -2.57 Total: -0.42 kcal Atomic # 7 Polarization: -64.84 SS G_CDS: 0.10 Total: -64.73 kcal Atomic # 8 Polarization: -16.72 SS G_CDS: 0.14 Total: -16.58 kcal Atomic # 14 Polarization: 22.33 SS G_CDS: -5.02 Total: 17.31 kcal Total LS contribution 6.18 Total: 6.18 kcal Total: -31.40 -9.17 -40.57 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001667117889.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.661 kcal (2) G-P(sol) polarization free energy of solvation -31.397 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.059 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.171 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.568 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.229 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds