Wall clock time and date at job start Wed Apr 1 2020 05:44:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38294 * 119.92245 * 2 1 4 4 C 1.38094 * 120.07458 * 179.97438 * 3 2 1 5 5 C 1.38931 * 119.92548 * 359.97438 * 4 3 2 6 6 N 1.39724 * 120.07705 * 179.97438 * 5 4 3 7 7 C 1.34770 * 120.00274 * 35.08969 * 6 5 4 8 8 O 1.21385 * 119.99934 * 355.38449 * 7 6 5 9 9 C 1.49353 * 120.00380 * 175.38088 * 7 6 5 10 10 O 1.21356 * 119.99865 * 0.02562 * 9 7 6 11 11 N 1.34770 * 120.00380 * 179.97438 * 9 7 6 12 12 C 1.46500 * 120.00328 * 180.02562 * 11 9 7 13 13 H 1.09002 * 109.47101 * 35.00453 * 12 11 9 14 14 C 1.53001 * 109.47299 * 154.99889 * 12 11 9 15 15 N 1.46498 * 109.47273 * 305.00519 * 14 12 11 16 16 C 1.36937 * 119.99945 * 179.72097 * 15 14 12 17 17 H 1.08005 * 120.00013 * 0.27775 * 16 15 14 18 18 C 1.38811 * 120.00027 * 180.27155 * 16 15 14 19 19 N 1.31619 * 120.00155 * 0.02562 * 18 16 15 20 20 Si 1.86805 * 119.99951 * 180.02562 * 18 16 15 21 21 H 1.48490 * 109.47169 * 90.00243 * 20 18 16 22 22 H 1.48503 * 109.46992 * 210.00142 * 20 18 16 23 23 H 1.48502 * 109.46872 * 329.99856 * 20 18 16 24 24 C 1.52998 * 109.47316 * 275.00115 * 12 11 9 25 25 C 1.53001 * 109.46599 * 64.99883 * 24 12 11 26 26 C 1.52997 * 109.47413 * 65.00450 * 25 24 12 27 27 C 1.53004 * 109.47008 * 184.99857 * 25 24 12 28 28 C 1.38927 * 119.84672 * 0.24560 * 5 4 3 29 29 C 1.38097 * 119.92087 * 359.52130 * 28 5 4 30 30 H 1.08997 * 109.47277 * 89.99482 * 1 2 3 31 31 H 1.09002 * 109.47263 * 209.99974 * 1 2 3 32 32 H 1.09001 * 109.46800 * 329.99549 * 1 2 3 33 33 H 1.08002 * 119.96217 * 359.97438 * 3 2 1 34 34 H 1.08000 * 120.03629 * 179.97438 * 4 3 2 35 35 H 0.96998 * 119.99887 * 215.09890 * 6 5 4 36 36 H 0.97002 * 120.00054 * 0.02562 * 11 9 7 37 37 H 1.09001 * 109.47213 * 184.99992 * 14 12 11 38 38 H 1.09004 * 109.47012 * 65.00260 * 14 12 11 39 39 H 0.96994 * 120.00049 * 359.97438 * 15 14 12 40 40 H 0.96996 * 120.00139 * 179.97438 * 19 18 16 41 41 H 1.09003 * 109.46985 * 184.99681 * 24 12 11 42 42 H 1.08994 * 109.47367 * 305.00237 * 24 12 11 43 43 H 1.08997 * 109.47473 * 304.99400 * 25 24 12 44 44 H 1.08997 * 109.47658 * 59.99064 * 26 25 24 45 45 H 1.08997 * 109.47380 * 180.02562 * 26 25 24 46 46 H 1.09003 * 109.47035 * 299.99440 * 26 25 24 47 47 H 1.09008 * 109.46677 * 59.99893 * 27 25 24 48 48 H 1.08990 * 109.47357 * 180.02562 * 27 25 24 49 49 H 1.08999 * 109.47433 * 300.00507 * 27 25 24 50 50 H 1.07996 * 120.04231 * 179.72729 * 28 5 4 51 51 H 1.08004 * 119.95790 * 180.20816 * 29 28 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1969 1.1986 0.0000 4 6 3.5778 1.2023 0.0005 5 6 4.2741 0.0000 0.0016 6 7 5.6713 0.0000 0.0016 7 6 6.3452 0.9556 0.6717 8 8 5.7413 1.8635 1.2050 9 6 7.8351 0.8976 0.7582 10 8 8.4390 -0.0098 0.2247 11 7 8.5090 1.8535 1.4278 12 6 9.9705 1.7968 1.5122 13 1 10.3727 1.3924 0.5833 14 6 10.5234 3.2057 1.7365 15 7 10.0332 4.0964 0.6817 16 6 10.3944 5.4172 0.6782 17 1 11.0443 5.8014 1.4506 18 6 9.9254 6.2624 -0.3181 19 7 9.1331 5.7944 -1.2591 20 14 10.4187 8.0641 -0.3232 21 1 11.6657 8.2337 -1.1113 22 1 9.3333 8.8728 -0.9341 23 1 10.6491 8.5182 1.0718 24 6 10.3795 0.8966 2.6798 25 6 9.9344 -0.5395 2.3965 26 6 10.6948 -1.0794 1.1836 27 6 10.2312 -1.4153 3.6155 28 6 3.5779 -1.2022 -0.0030 29 6 2.1969 -1.1985 0.0013 30 1 -0.3634 0.0001 -1.0276 31 1 -0.3634 -0.8900 0.5138 32 1 -0.3633 0.8900 0.5139 33 1 1.6550 2.1328 -0.0004 34 1 4.1159 2.1387 0.0001 35 1 6.1563 -0.6877 -0.4808 36 1 8.0264 2.5790 1.8540 37 1 11.6128 3.1769 1.7106 38 1 10.1927 3.5756 2.7070 39 1 9.4499 3.7513 -0.0122 40 1 8.8051 6.3850 -1.9551 41 1 11.4627 0.9247 2.7980 42 1 9.9047 1.2503 3.5949 43 1 8.8641 -0.5544 2.1905 44 1 11.7650 -1.0646 1.3896 45 1 10.3774 -2.1023 0.9815 46 1 10.4833 -0.4556 0.3151 47 1 9.6894 -1.0306 4.4797 48 1 9.9146 -2.4384 3.4136 49 1 11.3014 -1.4005 3.8217 50 1 4.1159 -2.1386 -0.0066 51 1 1.6551 -2.1328 0.0011 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001667117889.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:44:52 Heat of formation + Delta-G solvation = -61.115130 kcal Electronic energy + Delta-G solvation = -30875.731973 eV Core-core repulsion = 26774.235042 eV Total energy + Delta-G solvation = -4101.496931 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -42.22745 -40.84586 -39.50859 -38.10371 -36.47744 -36.37439 -35.02605 -33.04329 -32.54962 -31.92405 -30.77884 -28.04754 -27.84182 -27.20962 -25.67645 -24.58270 -24.00272 -22.64104 -21.92146 -21.33555 -20.86310 -19.89745 -19.15629 -18.46152 -17.80979 -17.34743 -16.90979 -16.62692 -16.43339 -16.28548 -15.66608 -15.51573 -15.34074 -15.06618 -14.80237 -14.69452 -14.57306 -14.52175 -14.39397 -14.26611 -13.69699 -13.34695 -13.26004 -13.06770 -12.99899 -12.97052 -12.89038 -12.79265 -12.56389 -12.38529 -12.30056 -12.10485 -12.03730 -11.89712 -11.65980 -11.41217 -11.29160 -11.27708 -10.98766 -10.61901 -10.10626 -9.91349 -9.08350 -9.02758 -7.95588 -5.25210 -0.05168 0.42593 0.56922 1.25001 1.46860 1.48426 1.56747 2.07981 2.52459 2.57176 2.78864 3.32104 3.39631 3.63067 3.90959 3.93657 4.00232 4.06281 4.09337 4.22593 4.33714 4.36761 4.38361 4.45808 4.50079 4.64287 4.78596 4.83557 4.83848 4.88846 4.89300 4.91887 4.99290 5.04941 5.10260 5.12280 5.16024 5.17792 5.27013 5.34741 5.37506 5.41946 5.45223 5.49952 5.55458 5.64670 5.67484 5.91267 6.04514 6.24757 6.30696 6.66022 6.90369 7.32174 8.05583 8.28259 9.27426 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.007708 B = 0.003211 C = 0.002371 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3631.602791 B = 8718.627313 C =11808.717659 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.101 4.101 3 C -0.115 4.115 4 C -0.140 4.140 5 C 0.112 3.888 6 N -0.633 5.633 7 C 0.505 3.495 8 O -0.525 6.525 9 C 0.510 3.490 10 O -0.519 6.519 11 N -0.676 5.676 12 C 0.145 3.855 13 H 0.081 0.919 14 C 0.142 3.858 15 N -0.744 5.744 16 C -0.243 4.243 17 H 0.081 0.919 18 C -0.076 4.076 19 N -0.969 5.969 20 Si 0.973 3.027 21 H -0.288 1.288 22 H -0.299 1.299 23 H -0.267 1.267 24 C -0.116 4.116 25 C -0.092 4.092 26 C -0.135 4.135 27 C -0.141 4.141 28 C -0.131 4.131 29 C -0.102 4.102 30 H 0.080 0.920 31 H 0.082 0.918 32 H 0.068 0.932 33 H 0.133 0.867 34 H 0.111 0.889 35 H 0.430 0.570 36 H 0.411 0.589 37 H 0.046 0.954 38 H 0.036 0.964 39 H 0.373 0.627 40 H 0.249 0.751 41 H 0.091 0.909 42 H 0.073 0.927 43 H 0.054 0.946 44 H 0.052 0.948 45 H 0.047 0.953 46 H 0.052 0.948 47 H 0.053 0.947 48 H 0.055 0.945 49 H 0.062 0.938 50 H 0.152 0.848 51 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.188 -19.931 6.481 23.758 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.101 4.101 3 C -0.133 4.133 4 C -0.160 4.160 5 C 0.019 3.981 6 N -0.280 5.280 7 C 0.287 3.713 8 O -0.400 6.400 9 C 0.290 3.710 10 O -0.396 6.396 11 N -0.327 5.327 12 C 0.041 3.959 13 H 0.099 0.901 14 C 0.016 3.984 15 N -0.387 5.387 16 C -0.374 4.374 17 H 0.098 0.902 18 C -0.268 4.268 19 N -0.619 5.619 20 Si 0.803 3.197 21 H -0.215 1.215 22 H -0.226 1.226 23 H -0.192 1.192 24 C -0.154 4.154 25 C -0.110 4.110 26 C -0.192 4.192 27 C -0.198 4.198 28 C -0.151 4.151 29 C -0.120 4.120 30 H 0.098 0.902 31 H 0.101 0.899 32 H 0.087 0.913 33 H 0.151 0.849 34 H 0.129 0.871 35 H 0.270 0.730 36 H 0.247 0.753 37 H 0.064 0.936 38 H 0.054 0.946 39 H 0.205 0.795 40 H 0.058 0.942 41 H 0.109 0.891 42 H 0.092 0.908 43 H 0.073 0.927 44 H 0.071 0.929 45 H 0.067 0.933 46 H 0.071 0.929 47 H 0.072 0.928 48 H 0.074 0.926 49 H 0.081 0.919 50 H 0.170 0.830 51 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges -10.992 -19.774 6.595 23.566 hybrid contribution 0.193 1.464 -0.704 1.636 sum -10.800 -18.311 5.891 22.060 Atomic orbital electron populations 1.20828 0.88904 1.03768 1.03225 1.20331 0.97848 0.92615 0.99342 1.21148 0.92800 0.99199 1.00200 1.21301 0.95424 0.97447 1.01821 1.17972 0.81604 0.95095 1.03424 1.42998 1.05169 1.30106 1.49760 1.20518 0.89107 0.82489 0.79177 1.90780 1.69973 1.33541 1.45686 1.19710 0.87421 0.83442 0.80405 1.90750 1.68950 1.34264 1.45640 1.45810 1.08262 1.26441 1.52185 1.21450 0.77873 0.95884 1.00724 0.90062 1.21168 0.97468 0.87910 0.91890 1.42523 1.59094 1.06655 1.30430 1.19632 1.23211 0.86567 1.08034 0.90161 1.25578 1.00864 1.02475 0.97892 1.69831 1.39384 1.36008 1.16711 0.85140 0.76659 0.80091 0.77855 1.21467 1.22585 1.19209 1.22007 1.02625 0.94113 0.96705 1.21104 0.99953 0.94058 0.95908 1.21787 0.99024 1.00463 0.97968 1.21806 1.02010 0.99186 0.96832 1.21209 0.95169 0.96214 1.02540 1.21228 0.92911 0.98808 0.99054 0.90166 0.89889 0.91273 0.84896 0.87111 0.73007 0.75285 0.93571 0.94599 0.79514 0.94213 0.89094 0.90829 0.92727 0.92868 0.93348 0.92931 0.92786 0.92616 0.91894 0.83009 0.82328 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.26 10.01 71.24 0.71 -0.55 16 2 C -0.10 -1.80 5.88 -19.84 -0.12 -1.92 16 3 C -0.11 -2.66 9.69 22.25 0.22 -2.45 16 4 C -0.14 -4.03 8.70 22.40 0.19 -3.83 16 5 C 0.11 2.87 6.30 38.21 0.24 3.11 16 6 N -0.63 -16.51 5.32 -304.84 -1.62 -18.13 16 7 C 0.50 16.21 7.73 87.24 0.67 16.89 16 8 O -0.52 -19.70 13.91 -3.36 -0.05 -19.75 16 9 C 0.51 16.43 6.44 87.24 0.56 16.99 16 10 O -0.52 -16.53 11.44 -3.27 -0.04 -16.57 16 11 N -0.68 -22.27 4.46 -443.98 -1.98 -24.25 16 12 C 0.14 4.55 2.33 44.99 0.10 4.66 16 13 H 0.08 2.84 5.92 -2.39 -0.01 2.82 16 14 C 0.14 5.31 5.82 86.38 0.50 5.82 16 15 N -0.74 -36.98 5.43 -343.45 -1.87 -38.85 16 16 C -0.24 -13.37 9.99 84.03 0.84 -12.53 16 17 H 0.08 4.19 7.83 -2.91 -0.02 4.17 16 18 C -0.08 -4.37 5.50 84.86 0.47 -3.91 16 19 N -0.97 -60.16 13.06 21.65 0.28 -59.88 16 20 Si 0.97 46.47 29.55 68.60 2.03 48.49 16 21 H -0.29 -13.49 7.11 99.48 0.71 -12.78 16 22 H -0.30 -14.52 7.11 99.48 0.71 -13.81 16 23 H -0.27 -11.98 7.11 99.48 0.71 -11.27 16 24 C -0.12 -2.83 4.36 30.59 0.13 -2.69 16 25 C -0.09 -2.18 2.38 -10.79 -0.03 -2.21 16 26 C -0.14 -3.34 8.03 71.98 0.58 -2.76 16 27 C -0.14 -2.69 9.19 71.98 0.66 -2.03 16 28 C -0.13 -2.45 9.97 22.40 0.22 -2.23 16 29 C -0.10 -1.62 9.69 22.25 0.22 -1.40 16 30 H 0.08 0.78 8.14 -2.39 -0.02 0.76 16 31 H 0.08 0.67 8.08 -2.39 -0.02 0.65 16 32 H 0.07 0.76 8.08 -2.39 -0.02 0.74 16 33 H 0.13 2.71 8.06 -2.91 -0.02 2.69 16 34 H 0.11 3.85 6.22 -2.91 -0.02 3.83 16 35 H 0.43 9.26 8.30 -92.71 -0.77 8.49 16 36 H 0.41 14.48 8.07 -92.71 -0.75 13.73 16 37 H 0.05 1.67 8.14 -2.39 -0.02 1.65 16 38 H 0.04 1.30 8.14 -2.38 -0.02 1.28 16 39 H 0.37 20.24 7.33 -92.71 -0.68 19.56 16 40 H 0.25 15.11 8.31 -92.71 -0.77 14.34 16 41 H 0.09 1.97 8.14 -2.39 -0.02 1.95 16 42 H 0.07 1.70 8.14 -2.39 -0.02 1.68 16 43 H 0.05 1.49 5.19 -2.39 -0.01 1.48 16 44 H 0.05 1.17 8.14 -2.39 -0.02 1.15 16 45 H 0.05 1.13 8.14 -2.39 -0.02 1.12 16 46 H 0.05 1.55 4.76 -2.39 -0.01 1.54 16 47 H 0.05 0.98 8.14 -2.38 -0.02 0.96 16 48 H 0.05 1.00 8.14 -2.39 -0.02 0.98 16 49 H 0.06 1.07 8.14 -2.39 -0.02 1.05 16 50 H 0.15 1.99 8.06 -2.91 -0.02 1.96 16 51 H 0.16 1.45 8.06 -2.91 -0.02 1.43 16 Total: -1.00 -69.54 410.20 1.71 -67.83 By element: Atomic # 1 Polarization: 53.38 SS G_CDS: -1.23 Total: 52.15 kcal Atomic # 6 Polarization: 2.77 SS G_CDS: 6.18 Total: 8.96 kcal Atomic # 7 Polarization: -135.92 SS G_CDS: -5.19 Total: -141.11 kcal Atomic # 8 Polarization: -36.23 SS G_CDS: -0.08 Total: -36.32 kcal Atomic # 14 Polarization: 46.47 SS G_CDS: 2.03 Total: 48.49 kcal Total: -69.54 1.71 -67.83 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001667117889.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.712 kcal (2) G-P(sol) polarization free energy of solvation -69.539 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.827 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.711 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.828 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.115 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds