Wall clock time and date at job start Wed Apr 1 2020 05:44:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.38097 * 120.03709 * 2 1 4 4 C 1.38293 * 120.07699 * 180.30083 * 3 2 1 5 5 C 1.38294 * 120.14558 * 359.72027 * 4 3 2 6 6 C 1.38088 * 120.08070 * 0.02562 * 5 4 3 7 7 C 1.50707 * 120.03756 * 179.97438 * 6 5 4 8 8 C 1.38928 * 119.92703 * 359.97438 * 6 5 4 9 9 N 1.39722 * 120.08071 * 179.97438 * 8 6 5 10 10 C 1.34779 * 119.99787 * 127.87722 * 9 8 6 11 11 O 1.21367 * 120.00191 * 356.37519 * 10 9 8 12 12 C 1.49356 * 119.99662 * 176.37584 * 10 9 8 13 13 O 1.21355 * 120.00170 * 0.02562 * 12 10 9 14 14 N 1.34779 * 119.99662 * 179.97438 * 12 10 9 15 15 C 1.46499 * 119.99627 * 179.97438 * 14 12 10 16 16 C 1.53009 * 109.46960 * 180.02562 * 15 14 12 17 17 H 1.09005 * 109.46939 * 295.00217 * 16 15 14 18 18 N 1.46500 * 109.47056 * 54.99890 * 16 15 14 19 19 C 1.36937 * 119.99960 * 204.99899 * 18 16 15 20 20 H 1.07997 * 119.99520 * 0.02562 * 19 18 16 21 21 C 1.38808 * 119.99800 * 179.72532 * 19 18 16 22 22 N 1.31625 * 120.00141 * 0.27934 * 21 19 18 23 23 Si 1.86794 * 119.99932 * 180.27368 * 21 19 18 24 24 H 1.48501 * 109.47119 * 90.00393 * 23 21 19 25 25 H 1.48504 * 109.47257 * 210.00257 * 23 21 19 26 26 H 1.48494 * 109.47480 * 330.00481 * 23 21 19 27 27 C 1.52999 * 109.46926 * 175.00343 * 16 15 14 28 28 C 1.52997 * 109.47224 * 59.99933 * 27 16 15 29 29 C 1.52999 * 109.46935 * 180.02562 * 27 16 15 30 30 H 1.09001 * 109.47191 * 278.11329 * 1 2 3 31 31 H 1.08998 * 109.47347 * 38.11305 * 1 2 3 32 32 H 1.08999 * 109.47068 * 158.11464 * 1 2 3 33 33 H 1.08007 * 119.96343 * 0.02562 * 3 2 1 34 34 H 1.08000 * 119.92368 * 179.74555 * 4 3 2 35 35 H 1.08005 * 119.95593 * 179.97438 * 5 4 3 36 36 H 1.09008 * 109.46861 * 270.02023 * 7 6 5 37 37 H 1.08992 * 109.46984 * 30.02000 * 7 6 5 38 38 H 1.09001 * 109.46851 * 150.02640 * 7 6 5 39 39 H 0.96994 * 120.00365 * 307.88078 * 9 8 6 40 40 H 0.96994 * 120.00252 * 0.02562 * 14 12 10 41 41 H 1.09004 * 109.47211 * 60.00624 * 15 14 12 42 42 H 1.08994 * 109.47404 * 299.99725 * 15 14 12 43 43 H 0.97002 * 119.99394 * 25.00608 * 18 16 15 44 44 H 0.97001 * 119.99890 * 179.97438 * 22 21 19 45 45 H 1.08998 * 109.46802 * 299.99668 * 27 16 15 46 46 H 1.08998 * 109.47447 * 60.00130 * 28 27 16 47 47 H 1.09000 * 109.47136 * 179.97438 * 28 27 16 48 48 H 1.08999 * 109.47392 * 299.99562 * 28 27 16 49 49 H 1.08999 * 109.47648 * 59.99628 * 29 27 16 50 50 H 1.09000 * 109.47146 * 180.02562 * 29 27 16 51 51 H 1.09005 * 109.46846 * 299.99822 * 29 27 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1983 1.1955 0.0000 4 6 3.5812 1.1965 -0.0063 5 6 4.2766 0.0011 -0.0067 6 6 3.5917 -1.1980 -0.0015 7 6 4.3505 -2.5001 -0.0026 8 6 2.2025 -1.2027 0.0049 9 7 1.5063 -2.4141 0.0097 10 6 0.5533 -2.6400 0.9357 11 8 0.3453 -1.8191 1.8051 12 6 -0.2466 -3.9005 0.8918 13 8 -0.0383 -4.7215 0.0227 14 7 -1.1992 -4.1266 1.8181 15 6 -1.9842 -5.3628 1.7747 16 6 -2.9889 -5.3696 2.9287 17 1 -2.4527 -5.4016 3.8772 18 7 -3.8070 -4.1556 2.8710 19 6 -4.3937 -3.6706 4.0093 20 1 -4.2529 -4.1828 4.9496 21 6 -5.1642 -2.5173 3.9557 22 7 -5.3354 -1.8928 2.8097 23 14 -5.9581 -1.8514 5.5099 24 1 -5.0286 -0.9017 6.1727 25 1 -7.2181 -1.1477 5.1597 26 1 -6.2588 -2.9751 6.4328 27 6 -3.8918 -6.5992 2.8115 28 6 -3.0373 -7.8669 2.8718 29 6 -4.8969 -6.6057 3.9650 30 1 -0.3634 0.1450 1.0174 31 1 -0.3634 0.8085 -0.6343 32 1 -0.3633 -0.9536 -0.3831 33 1 1.6583 2.1309 0.0004 34 1 4.1193 2.1329 -0.0104 35 1 5.3566 0.0054 -0.0121 36 1 4.5290 -2.8157 -1.0306 37 1 5.3045 -2.3651 0.5070 38 1 3.7665 -3.2613 0.5149 39 1 1.7087 -3.0925 -0.6533 40 1 -1.3655 -3.4706 2.5129 41 1 -1.3175 -6.2201 1.8680 42 1 -2.5196 -5.4201 0.8271 43 1 -3.9332 -3.6956 2.0264 44 1 -5.8741 -1.0871 2.7722 45 1 -4.4280 -6.5671 1.8631 46 1 -2.5011 -7.8990 3.8202 47 1 -3.6805 -8.7429 2.7887 48 1 -2.3216 -7.8621 2.0497 49 1 -5.5056 -5.7025 3.9218 50 1 -5.5398 -7.4819 3.8819 51 1 -4.3609 -6.6375 4.9137 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001667525135.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:44:12 Heat of formation + Delta-G solvation = -42.045897 kcal Electronic energy + Delta-G solvation = -31082.657222 eV Core-core repulsion = 26981.987195 eV Total energy + Delta-G solvation = -4100.670027 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.14662 -39.58485 -38.19503 -37.26542 -35.16755 -33.90970 -33.62584 -33.13424 -30.91265 -30.44505 -28.43071 -27.45953 -26.76418 -26.20281 -24.94916 -23.50368 -22.08099 -21.30452 -21.07180 -20.13202 -19.47875 -18.60515 -17.50726 -17.12407 -16.39659 -16.26424 -15.54207 -15.31947 -15.23276 -14.95658 -14.25449 -14.07394 -14.00329 -13.92168 -13.76363 -13.48529 -13.28919 -13.15619 -13.07663 -12.90434 -12.78196 -12.26121 -12.06159 -11.97637 -11.74537 -11.65780 -11.47745 -11.39228 -11.28595 -11.12026 -10.96224 -10.81602 -10.66108 -10.32624 -10.15211 -10.11072 -10.00835 -9.56890 -9.47565 -8.94767 -8.85835 -8.68478 -8.40792 -7.04613 -5.81727 -3.11470 1.02677 1.23026 1.62381 2.45236 3.31709 3.41135 3.46793 3.48247 3.59110 3.76670 4.53737 4.58062 4.65389 4.65708 4.84643 5.08860 5.23758 5.25496 5.31088 5.32363 5.37127 5.39487 5.48568 5.58552 5.62900 5.67419 5.70895 5.80610 5.80852 5.90170 5.92973 6.10970 6.17904 6.19082 6.23189 6.29960 6.32471 6.36906 6.39005 6.45695 6.46584 6.54457 6.57776 6.75174 6.84501 7.01750 7.03821 7.28194 7.54912 7.66869 7.88750 8.17798 8.34937 9.47251 10.00046 10.35674 11.39940 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.011198 B = 0.002960 C = 0.002447 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2499.855643 B = 9456.613562 C =11438.290092 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.065 4.065 3 C -0.114 4.114 4 C -0.118 4.118 5 C -0.118 4.118 6 C -0.092 4.092 7 C -0.116 4.116 8 C 0.134 3.866 9 N -0.652 5.652 10 C 0.504 3.496 11 O -0.487 6.487 12 C 0.505 3.495 13 O -0.536 6.536 14 N -0.674 5.674 15 C 0.110 3.890 16 C 0.169 3.831 17 H 0.056 0.944 18 N -0.721 5.721 19 C -0.239 4.239 20 H 0.073 0.927 21 C -0.008 4.008 22 N -0.927 5.927 23 Si 0.903 3.097 24 H -0.290 1.290 25 H -0.292 1.292 26 H -0.282 1.282 27 C -0.109 4.109 28 C -0.150 4.150 29 C -0.139 4.139 30 H 0.090 0.910 31 H 0.065 0.935 32 H 0.057 0.943 33 H 0.126 0.874 34 H 0.123 0.877 35 H 0.124 0.876 36 H 0.072 0.928 37 H 0.070 0.930 38 H 0.067 0.933 39 H 0.419 0.581 40 H 0.423 0.577 41 H 0.073 0.927 42 H 0.070 0.930 43 H 0.385 0.615 44 H 0.255 0.745 45 H 0.063 0.937 46 H 0.050 0.950 47 H 0.046 0.954 48 H 0.050 0.950 49 H 0.087 0.913 50 H 0.031 0.969 51 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.448 -1.170 -7.145 18.890 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.067 4.067 3 C -0.133 4.133 4 C -0.136 4.136 5 C -0.136 4.136 6 C -0.094 4.094 7 C -0.172 4.172 8 C 0.041 3.959 9 N -0.301 5.301 10 C 0.286 3.714 11 O -0.358 6.358 12 C 0.284 3.716 13 O -0.414 6.414 14 N -0.327 5.327 15 C -0.014 4.014 16 C 0.058 3.942 17 H 0.074 0.926 18 N -0.362 5.362 19 C -0.370 4.370 20 H 0.091 0.909 21 C -0.205 4.205 22 N -0.575 5.575 23 Si 0.734 3.266 24 H -0.217 1.217 25 H -0.219 1.219 26 H -0.207 1.207 27 C -0.131 4.131 28 C -0.208 4.208 29 C -0.197 4.197 30 H 0.109 0.891 31 H 0.084 0.916 32 H 0.076 0.924 33 H 0.144 0.856 34 H 0.141 0.859 35 H 0.142 0.858 36 H 0.091 0.909 37 H 0.089 0.911 38 H 0.086 0.914 39 H 0.257 0.743 40 H 0.262 0.738 41 H 0.091 0.909 42 H 0.088 0.912 43 H 0.219 0.781 44 H 0.065 0.935 45 H 0.082 0.918 46 H 0.069 0.931 47 H 0.065 0.935 48 H 0.069 0.931 49 H 0.106 0.894 50 H 0.050 0.950 51 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges 17.287 -1.149 -6.912 18.653 hybrid contribution -0.582 0.569 0.541 0.978 sum 16.705 -0.580 -6.371 17.888 Atomic orbital electron populations 1.20924 0.90332 1.02165 1.03600 1.19964 0.96668 0.91829 0.98211 1.20911 0.94148 0.97206 1.01023 1.21124 0.94178 0.98001 1.00294 1.20823 0.99609 0.91388 1.01816 1.19839 0.91797 0.96244 1.01472 1.20761 0.99924 0.94119 1.02438 1.17264 0.89902 0.84946 1.03761 1.43025 1.36871 1.17326 1.32912 1.20411 0.81028 0.87839 0.82082 1.90839 1.65252 1.45741 1.34011 1.19793 0.82044 0.86644 0.83115 1.90730 1.68299 1.46495 1.35908 1.45849 1.33797 1.22987 1.30017 1.21957 0.93519 0.84953 1.00982 1.20565 0.90251 0.88276 0.95072 0.92635 1.42450 1.58187 1.26101 1.09501 1.19166 1.23933 1.05756 0.88150 0.90879 1.24725 1.00979 0.98130 0.96650 1.69657 1.43860 1.20353 1.23614 0.86266 0.78738 0.78898 0.82730 1.21697 1.21882 1.20741 1.21730 0.97254 0.94443 0.99635 1.21949 0.99758 0.97924 1.01123 1.21818 0.98880 1.02141 0.96818 0.89147 0.91640 0.92394 0.85595 0.85883 0.85763 0.90949 0.91148 0.91450 0.74308 0.73804 0.90870 0.91156 0.78097 0.93481 0.91808 0.93133 0.93483 0.93079 0.89399 0.94960 0.94033 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.61 8.22 36.01 0.30 -1.31 16 2 C -0.06 -0.86 5.48 -104.42 -0.57 -1.43 16 3 C -0.11 -1.29 9.73 -39.61 -0.39 -1.67 16 4 C -0.12 -1.14 10.04 -39.54 -0.40 -1.54 16 5 C -0.12 -1.13 9.69 -39.62 -0.38 -1.51 16 6 C -0.09 -0.99 5.90 -104.42 -0.62 -1.60 16 7 C -0.12 -0.97 9.67 36.01 0.35 -0.62 16 8 C 0.13 1.73 5.83 -83.75 -0.49 1.24 16 9 N -0.65 -8.37 3.90 -10.30 -0.04 -8.41 16 10 C 0.50 7.83 6.03 -11.63 -0.07 7.76 16 11 O -0.49 -8.76 13.55 5.48 0.07 -8.69 16 12 C 0.50 8.21 7.89 -11.63 -0.09 8.12 16 13 O -0.54 -9.14 16.48 5.49 0.09 -9.05 16 14 N -0.67 -11.35 5.38 -60.76 -0.33 -11.68 16 15 C 0.11 1.77 4.73 -4.04 -0.02 1.75 16 16 C 0.17 3.02 2.18 -67.93 -0.15 2.87 16 17 H 0.06 1.02 8.08 -51.93 -0.42 0.60 16 18 N -0.72 -16.18 4.44 -53.42 -0.24 -16.42 16 19 C -0.24 -6.03 7.57 -15.06 -0.11 -6.15 16 20 H 0.07 1.81 7.40 -52.49 -0.39 1.42 16 21 C -0.01 -0.22 5.50 -17.43 -0.10 -0.32 16 22 N -0.93 -26.68 13.06 55.49 0.72 -25.95 16 23 Si 0.90 21.65 29.55 -169.99 -5.02 16.63 16 24 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 25 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 26 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 27 C -0.11 -1.78 2.69 -90.62 -0.24 -2.03 16 28 C -0.15 -2.00 8.84 37.16 0.33 -1.67 16 29 C -0.14 -2.45 8.26 37.16 0.31 -2.14 16 30 H 0.09 1.47 7.09 -51.93 -0.37 1.10 16 31 H 0.06 0.79 8.13 -51.93 -0.42 0.37 16 32 H 0.06 0.87 6.17 -51.93 -0.32 0.55 16 33 H 0.13 1.20 8.06 -52.48 -0.42 0.77 16 34 H 0.12 0.88 8.06 -52.49 -0.42 0.45 16 35 H 0.12 0.88 8.06 -52.48 -0.42 0.46 16 36 H 0.07 0.50 8.14 -51.92 -0.42 0.08 16 37 H 0.07 0.50 8.09 -51.93 -0.42 0.08 16 38 H 0.07 0.62 7.45 -51.93 -0.39 0.23 16 39 H 0.42 4.63 8.15 -40.82 -0.33 4.29 16 40 H 0.42 7.79 7.61 -40.82 -0.31 7.48 16 41 H 0.07 1.07 6.71 -51.93 -0.35 0.72 16 42 H 0.07 1.18 8.14 -51.93 -0.42 0.76 16 43 H 0.38 9.49 7.80 -40.82 -0.32 9.17 16 44 H 0.26 7.24 8.31 -40.82 -0.34 6.90 16 45 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 46 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 47 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 48 H 0.05 0.63 6.54 -51.93 -0.34 0.29 16 49 H 0.09 1.84 6.01 -51.93 -0.31 1.53 16 50 H 0.03 0.50 8.14 -51.93 -0.42 0.08 16 51 H 0.04 0.71 8.14 -51.93 -0.42 0.28 16 LS Contribution 410.64 15.07 6.19 6.19 Total: -1.00 -29.55 410.64 -8.95 -38.50 By element: Atomic # 1 Polarization: 27.17 SS G_CDS: -8.05 Total: 19.12 kcal Atomic # 6 Polarization: 2.10 SS G_CDS: -2.35 Total: -0.24 kcal Atomic # 7 Polarization: -62.57 SS G_CDS: 0.12 Total: -62.45 kcal Atomic # 8 Polarization: -17.91 SS G_CDS: 0.16 Total: -17.74 kcal Atomic # 14 Polarization: 21.65 SS G_CDS: -5.02 Total: 16.63 kcal Total LS contribution 6.19 Total: 6.19 kcal Total: -29.55 -8.95 -38.50 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001667525135.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.544 kcal (2) G-P(sol) polarization free energy of solvation -29.555 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.099 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.947 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.502 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.046 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds