Wall clock time and date at job start Wed Apr 1 2020 05:44:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.38097 * 120.03709 * 2 1 4 4 C 1.38293 * 120.07699 * 180.30083 * 3 2 1 5 5 C 1.38294 * 120.14558 * 359.72027 * 4 3 2 6 6 C 1.38088 * 120.08070 * 0.02562 * 5 4 3 7 7 C 1.50707 * 120.03756 * 179.97438 * 6 5 4 8 8 C 1.38928 * 119.92703 * 359.97438 * 6 5 4 9 9 N 1.39722 * 120.08071 * 179.97438 * 8 6 5 10 10 C 1.34779 * 119.99787 * 127.87722 * 9 8 6 11 11 O 1.21367 * 120.00191 * 356.37519 * 10 9 8 12 12 C 1.49356 * 119.99662 * 176.37584 * 10 9 8 13 13 O 1.21355 * 120.00170 * 0.02562 * 12 10 9 14 14 N 1.34779 * 119.99662 * 179.97438 * 12 10 9 15 15 C 1.46499 * 119.99627 * 179.97438 * 14 12 10 16 16 C 1.53009 * 109.46960 * 180.02562 * 15 14 12 17 17 H 1.09005 * 109.46939 * 295.00217 * 16 15 14 18 18 N 1.46500 * 109.47056 * 54.99890 * 16 15 14 19 19 C 1.36937 * 119.99960 * 204.99899 * 18 16 15 20 20 H 1.07997 * 119.99520 * 0.02562 * 19 18 16 21 21 C 1.38808 * 119.99800 * 179.72532 * 19 18 16 22 22 N 1.31625 * 120.00141 * 0.27934 * 21 19 18 23 23 Si 1.86794 * 119.99932 * 180.27368 * 21 19 18 24 24 H 1.48501 * 109.47119 * 90.00393 * 23 21 19 25 25 H 1.48504 * 109.47257 * 210.00257 * 23 21 19 26 26 H 1.48494 * 109.47480 * 330.00481 * 23 21 19 27 27 C 1.52999 * 109.46926 * 175.00343 * 16 15 14 28 28 C 1.52997 * 109.47224 * 59.99933 * 27 16 15 29 29 C 1.52999 * 109.46935 * 180.02562 * 27 16 15 30 30 H 1.09001 * 109.47191 * 278.11329 * 1 2 3 31 31 H 1.08998 * 109.47347 * 38.11305 * 1 2 3 32 32 H 1.08999 * 109.47068 * 158.11464 * 1 2 3 33 33 H 1.08007 * 119.96343 * 0.02562 * 3 2 1 34 34 H 1.08000 * 119.92368 * 179.74555 * 4 3 2 35 35 H 1.08005 * 119.95593 * 179.97438 * 5 4 3 36 36 H 1.09008 * 109.46861 * 270.02023 * 7 6 5 37 37 H 1.08992 * 109.46984 * 30.02000 * 7 6 5 38 38 H 1.09001 * 109.46851 * 150.02640 * 7 6 5 39 39 H 0.96994 * 120.00365 * 307.88078 * 9 8 6 40 40 H 0.96994 * 120.00252 * 0.02562 * 14 12 10 41 41 H 1.09004 * 109.47211 * 60.00624 * 15 14 12 42 42 H 1.08994 * 109.47404 * 299.99725 * 15 14 12 43 43 H 0.97002 * 119.99394 * 25.00608 * 18 16 15 44 44 H 0.97001 * 119.99890 * 179.97438 * 22 21 19 45 45 H 1.08998 * 109.46802 * 299.99668 * 27 16 15 46 46 H 1.08998 * 109.47447 * 60.00130 * 28 27 16 47 47 H 1.09000 * 109.47136 * 179.97438 * 28 27 16 48 48 H 1.08999 * 109.47392 * 299.99562 * 28 27 16 49 49 H 1.08999 * 109.47648 * 59.99628 * 29 27 16 50 50 H 1.09000 * 109.47146 * 180.02562 * 29 27 16 51 51 H 1.09005 * 109.46846 * 299.99822 * 29 27 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1983 1.1955 0.0000 4 6 3.5812 1.1965 -0.0063 5 6 4.2766 0.0011 -0.0067 6 6 3.5917 -1.1980 -0.0015 7 6 4.3505 -2.5001 -0.0026 8 6 2.2025 -1.2027 0.0049 9 7 1.5063 -2.4141 0.0097 10 6 0.5533 -2.6400 0.9357 11 8 0.3453 -1.8191 1.8051 12 6 -0.2466 -3.9005 0.8918 13 8 -0.0383 -4.7215 0.0227 14 7 -1.1992 -4.1266 1.8181 15 6 -1.9842 -5.3628 1.7747 16 6 -2.9889 -5.3696 2.9287 17 1 -2.4527 -5.4016 3.8772 18 7 -3.8070 -4.1556 2.8710 19 6 -4.3937 -3.6706 4.0093 20 1 -4.2529 -4.1828 4.9496 21 6 -5.1642 -2.5173 3.9557 22 7 -5.3354 -1.8928 2.8097 23 14 -5.9581 -1.8514 5.5099 24 1 -5.0286 -0.9017 6.1727 25 1 -7.2181 -1.1477 5.1597 26 1 -6.2588 -2.9751 6.4328 27 6 -3.8918 -6.5992 2.8115 28 6 -3.0373 -7.8669 2.8718 29 6 -4.8969 -6.6057 3.9650 30 1 -0.3634 0.1450 1.0174 31 1 -0.3634 0.8085 -0.6343 32 1 -0.3633 -0.9536 -0.3831 33 1 1.6583 2.1309 0.0004 34 1 4.1193 2.1329 -0.0104 35 1 5.3566 0.0054 -0.0121 36 1 4.5290 -2.8157 -1.0306 37 1 5.3045 -2.3651 0.5070 38 1 3.7665 -3.2613 0.5149 39 1 1.7087 -3.0925 -0.6533 40 1 -1.3655 -3.4706 2.5129 41 1 -1.3175 -6.2201 1.8680 42 1 -2.5196 -5.4201 0.8271 43 1 -3.9332 -3.6956 2.0264 44 1 -5.8741 -1.0871 2.7722 45 1 -4.4280 -6.5671 1.8631 46 1 -2.5011 -7.8990 3.8202 47 1 -3.6805 -8.7429 2.7887 48 1 -2.3216 -7.8621 2.0497 49 1 -5.5056 -5.7025 3.9218 50 1 -5.5398 -7.4819 3.8819 51 1 -4.3609 -6.6375 4.9137 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001667525135.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:44:11 Heat of formation + Delta-G solvation = -60.370373 kcal Electronic energy + Delta-G solvation = -31083.451830 eV Core-core repulsion = 26981.987195 eV Total energy + Delta-G solvation = -4101.464636 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -42.28058 -40.72604 -39.38412 -38.71918 -36.28286 -35.22363 -34.90952 -34.52130 -32.20332 -31.82347 -29.92094 -28.45623 -27.58950 -27.48740 -26.37359 -25.13188 -23.41857 -22.36920 -22.05005 -21.33345 -20.79557 -19.93275 -19.02689 -18.50179 -17.57387 -17.44654 -17.00904 -16.61148 -16.33769 -16.13648 -15.73951 -15.46328 -15.21016 -15.00270 -14.92665 -14.86371 -14.69723 -14.31714 -14.07141 -13.89787 -13.80810 -13.62781 -13.43250 -12.91613 -12.88590 -12.87327 -12.85827 -12.71568 -12.51671 -12.46848 -12.27673 -12.22718 -12.17276 -12.01264 -11.75496 -11.44339 -11.29067 -11.18580 -10.88596 -10.72265 -10.23964 -9.52848 -9.33208 -8.96460 -7.88157 -5.14991 0.01817 0.38493 0.48316 1.27115 1.48593 1.49892 1.56519 2.05544 2.56075 2.60750 2.73903 3.34375 3.46707 3.76708 3.82750 3.84894 3.88601 4.06725 4.28994 4.30786 4.32695 4.41360 4.43141 4.43360 4.50572 4.60966 4.65233 4.72965 4.78568 4.81178 4.90939 4.92662 4.97597 5.03146 5.10897 5.13320 5.20137 5.23479 5.28153 5.29964 5.40190 5.43139 5.54428 5.57908 5.59584 5.66345 5.78461 5.86191 6.05037 6.26811 6.31923 6.66101 6.86807 7.40061 8.11098 8.35089 9.34646 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.011198 B = 0.002960 C = 0.002447 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2499.855643 B = 9456.613562 C =11438.290092 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C -0.090 4.090 3 C -0.125 4.125 4 C -0.112 4.112 5 C -0.116 4.116 6 C -0.094 4.094 7 C -0.115 4.115 8 C 0.106 3.894 9 N -0.634 5.634 10 C 0.506 3.494 11 O -0.518 6.518 12 C 0.508 3.492 13 O -0.542 6.542 14 N -0.679 5.679 15 C 0.117 3.883 16 C 0.169 3.831 17 H 0.056 0.944 18 N -0.728 5.728 19 C -0.215 4.215 20 H 0.079 0.921 21 C -0.072 4.072 22 N -0.966 5.966 23 Si 0.957 3.043 24 H -0.294 1.294 25 H -0.303 1.303 26 H -0.269 1.269 27 C -0.104 4.104 28 C -0.141 4.141 29 C -0.136 4.136 30 H 0.062 0.938 31 H 0.079 0.921 32 H 0.041 0.959 33 H 0.138 0.862 34 H 0.154 0.846 35 H 0.157 0.843 36 H 0.089 0.911 37 H 0.088 0.912 38 H 0.055 0.945 39 H 0.426 0.574 40 H 0.415 0.585 41 H 0.098 0.902 42 H 0.064 0.936 43 H 0.372 0.628 44 H 0.246 0.754 45 H 0.054 0.946 46 H 0.058 0.942 47 H 0.061 0.939 48 H 0.062 0.938 49 H 0.048 0.952 50 H 0.052 0.948 51 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.162 -2.333 -7.178 21.529 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.092 4.092 3 C -0.144 4.144 4 C -0.130 4.130 5 C -0.134 4.134 6 C -0.096 4.096 7 C -0.171 4.171 8 C 0.013 3.987 9 N -0.283 5.283 10 C 0.288 3.712 11 O -0.393 6.393 12 C 0.288 3.712 13 O -0.421 6.421 14 N -0.330 5.330 15 C -0.006 4.006 16 C 0.060 3.940 17 H 0.074 0.926 18 N -0.368 5.368 19 C -0.347 4.347 20 H 0.097 0.903 21 C -0.264 4.264 22 N -0.617 5.617 23 Si 0.788 3.212 24 H -0.222 1.222 25 H -0.230 1.230 26 H -0.194 1.194 27 C -0.126 4.126 28 C -0.199 4.199 29 C -0.193 4.193 30 H 0.080 0.920 31 H 0.098 0.902 32 H 0.060 0.940 33 H 0.156 0.844 34 H 0.172 0.828 35 H 0.174 0.826 36 H 0.108 0.892 37 H 0.107 0.893 38 H 0.074 0.926 39 H 0.266 0.734 40 H 0.252 0.748 41 H 0.116 0.884 42 H 0.083 0.917 43 H 0.204 0.796 44 H 0.055 0.945 45 H 0.073 0.927 46 H 0.077 0.923 47 H 0.080 0.920 48 H 0.081 0.919 49 H 0.067 0.933 50 H 0.071 0.929 51 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 20.046 -2.382 -6.953 21.351 hybrid contribution -1.305 0.876 0.510 1.652 sum 18.741 -1.506 -6.443 19.875 Atomic orbital electron populations 1.20783 0.91810 1.01746 1.01998 1.20044 0.95943 0.93125 1.00077 1.21152 0.95269 0.96911 1.01058 1.21521 0.93514 0.99552 0.98424 1.21256 1.01246 0.90685 1.00212 1.20171 0.90937 0.98009 1.00503 1.20818 1.00132 0.92525 1.03626 1.17545 0.91008 0.84440 1.05687 1.42879 1.35743 1.17677 1.31994 1.20275 0.81396 0.87200 0.82310 1.90829 1.66391 1.46539 1.35531 1.19896 0.81839 0.86807 0.82695 1.90716 1.68586 1.46809 1.36009 1.45884 1.34096 1.23036 1.29985 1.21927 0.93371 0.85534 0.99783 1.20746 0.90223 0.87157 0.95852 0.92593 1.42570 1.58545 1.27568 1.08131 1.19450 1.21654 1.04549 0.89011 0.90292 1.25357 1.02952 0.99330 0.98781 1.69802 1.45674 1.20886 1.25356 0.85378 0.77286 0.78331 0.80242 1.22184 1.22992 1.19365 1.21609 0.97040 0.95223 0.98712 1.21863 0.99648 0.96289 1.02110 1.21738 0.98960 1.01101 0.97502 0.91968 0.90244 0.94023 0.84440 0.82834 0.82566 0.89233 0.89349 0.92601 0.73386 0.74761 0.88445 0.91742 0.79609 0.94518 0.92745 0.92310 0.92009 0.91868 0.93282 0.92936 0.93613 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -3.21 8.22 71.24 0.59 -2.63 16 2 C -0.09 -2.43 5.48 -19.73 -0.11 -2.53 16 3 C -0.13 -2.71 9.73 22.25 0.22 -2.49 16 4 C -0.11 -1.87 10.04 22.30 0.22 -1.65 16 5 C -0.12 -1.86 9.69 22.25 0.22 -1.64 16 6 C -0.09 -1.86 5.90 -19.73 -0.12 -1.98 16 7 C -0.11 -1.64 9.67 71.24 0.69 -0.95 16 8 C 0.11 2.69 5.83 38.21 0.22 2.91 16 9 N -0.63 -16.45 3.90 -304.84 -1.19 -17.64 16 10 C 0.51 16.23 6.03 87.24 0.53 16.75 16 11 O -0.52 -19.63 13.55 -3.30 -0.04 -19.67 16 12 C 0.51 16.72 7.89 87.24 0.69 17.41 16 13 O -0.54 -18.25 16.48 -3.26 -0.05 -18.30 16 14 N -0.68 -23.17 5.38 -464.50 -2.50 -25.67 16 15 C 0.12 3.70 4.73 86.38 0.41 4.11 16 16 C 0.17 5.95 2.18 44.99 0.10 6.05 16 17 H 0.06 2.00 8.08 -2.38 -0.02 1.98 16 18 N -0.73 -33.31 4.44 -322.93 -1.43 -34.74 16 19 C -0.21 -10.98 7.57 84.03 0.64 -10.35 16 20 H 0.08 3.89 7.40 -2.91 -0.02 3.87 16 21 C -0.07 -3.98 5.50 84.86 0.47 -3.51 16 22 N -0.97 -57.77 13.06 21.65 0.28 -57.49 16 23 Si 0.96 45.59 29.55 68.60 2.03 47.61 16 24 H -0.29 -14.07 7.11 99.48 0.71 -13.37 16 25 H -0.30 -14.81 7.11 99.48 0.71 -14.11 16 26 H -0.27 -12.04 7.11 99.48 0.71 -11.33 16 27 C -0.10 -3.27 2.69 -10.80 -0.03 -3.30 16 28 C -0.14 -3.33 8.84 71.98 0.64 -2.70 16 29 C -0.14 -4.60 8.26 71.98 0.59 -4.00 16 30 H 0.06 2.20 7.09 -2.39 -0.02 2.18 16 31 H 0.08 2.04 8.13 -2.39 -0.02 2.02 16 32 H 0.04 1.33 6.17 -2.39 -0.01 1.32 16 33 H 0.14 2.51 8.06 -2.91 -0.02 2.49 16 34 H 0.15 1.59 8.06 -2.91 -0.02 1.57 16 35 H 0.16 1.50 8.06 -2.91 -0.02 1.47 16 36 H 0.09 0.99 8.14 -2.38 -0.02 0.97 16 37 H 0.09 0.96 8.09 -2.39 -0.02 0.94 16 38 H 0.05 0.94 7.45 -2.39 -0.02 0.92 16 39 H 0.43 9.35 8.15 -92.71 -0.76 8.60 16 40 H 0.42 15.81 7.61 -92.71 -0.71 15.11 16 41 H 0.10 2.63 6.71 -2.39 -0.02 2.62 16 42 H 0.06 2.13 8.14 -2.39 -0.02 2.11 16 43 H 0.37 18.99 7.80 -92.71 -0.72 18.27 16 44 H 0.25 14.58 8.31 -92.71 -0.77 13.81 16 45 H 0.05 1.82 8.14 -2.39 -0.02 1.80 16 46 H 0.06 1.31 8.14 -2.39 -0.02 1.29 16 47 H 0.06 1.31 8.14 -2.39 -0.02 1.29 16 48 H 0.06 1.35 6.54 -2.39 -0.02 1.34 16 49 H 0.05 2.04 6.01 -2.39 -0.01 2.03 16 50 H 0.05 1.54 8.14 -2.39 -0.02 1.52 16 51 H 0.04 1.48 8.14 -2.38 -0.02 1.46 16 Total: -1.00 -66.08 410.64 1.83 -64.25 By element: Atomic # 1 Polarization: 53.36 SS G_CDS: -1.21 Total: 52.15 kcal Atomic # 6 Polarization: 3.55 SS G_CDS: 5.95 Total: 9.50 kcal Atomic # 7 Polarization: -130.70 SS G_CDS: -4.84 Total: -135.53 kcal Atomic # 8 Polarization: -37.88 SS G_CDS: -0.10 Total: -37.98 kcal Atomic # 14 Polarization: 45.59 SS G_CDS: 2.03 Total: 47.61 kcal Total: -66.08 1.83 -64.25 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001667525135.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.876 kcal (2) G-P(sol) polarization free energy of solvation -66.077 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.201 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.831 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.246 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.370 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds