Wall clock time and date at job start Wed Apr 1 2020 05:43:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.38100 * 120.03772 * 2 1 4 4 C 1.38298 * 120.07357 * 179.72470 * 3 2 1 5 5 C 1.38290 * 120.15385 * 0.29223 * 4 3 2 6 6 C 1.38098 * 120.07695 * 359.96053 * 5 4 3 7 7 C 1.50699 * 120.03754 * 180.02562 * 6 5 4 8 8 C 1.38928 * 119.92269 * 0.02562 * 6 5 4 9 9 N 1.39723 * 120.07577 * 180.02562 * 8 6 5 10 10 C 1.34769 * 120.00559 * 232.39698 * 9 8 6 11 11 O 1.21382 * 119.99978 * 4.51507 * 10 9 8 12 12 C 1.49350 * 120.00570 * 184.51084 * 10 9 8 13 13 O 1.21366 * 119.99713 * 0.03404 * 12 10 9 14 14 N 1.34770 * 120.00292 * 180.02562 * 12 10 9 15 15 C 1.46503 * 120.00128 * 352.98416 * 14 12 10 16 16 C 1.46504 * 119.99935 * 172.98737 * 14 12 10 17 17 C 1.53007 * 109.47122 * 89.99782 * 16 14 12 18 18 C 1.53003 * 109.46985 * 179.97438 * 17 16 14 19 19 N 1.46500 * 109.46843 * 180.02562 * 18 17 16 20 20 C 1.46503 * 119.99802 * 269.99953 * 19 18 17 21 21 C 1.36932 * 120.00049 * 90.00615 * 19 18 17 22 22 H 1.07997 * 120.00342 * 31.91922 * 21 19 18 23 23 C 1.38816 * 120.00025 * 211.92600 * 21 19 18 24 24 N 1.31619 * 119.99459 * 6.31556 * 23 21 19 25 25 Si 1.86792 * 120.00277 * 186.31576 * 23 21 19 26 26 H 1.48503 * 109.47169 * 59.99804 * 25 23 21 27 27 H 1.48503 * 109.47339 * 179.97438 * 25 23 21 28 28 H 1.48505 * 109.47186 * 299.99824 * 25 23 21 29 29 H 1.09004 * 109.46961 * 85.65234 * 1 2 3 30 30 H 1.08997 * 109.47700 * 205.65061 * 1 2 3 31 31 H 1.09004 * 109.47278 * 325.65540 * 1 2 3 32 32 H 1.07992 * 119.96050 * 359.97438 * 3 2 1 33 33 H 1.08002 * 119.91810 * 180.27358 * 4 3 2 34 34 H 1.07998 * 119.96324 * 179.97438 * 5 4 3 35 35 H 1.08995 * 109.47382 * 89.99910 * 7 6 5 36 36 H 1.09006 * 109.47019 * 210.00161 * 7 6 5 37 37 H 1.09000 * 109.47396 * 329.99497 * 7 6 5 38 38 H 0.97004 * 119.99366 * 52.40663 * 9 8 6 39 39 H 1.08993 * 109.46786 * 84.80272 * 15 14 12 40 40 H 1.09003 * 109.47038 * 204.79961 * 15 14 12 41 41 H 1.09004 * 109.46906 * 324.80136 * 15 14 12 42 42 H 1.09008 * 109.47228 * 209.99643 * 16 14 12 43 43 H 1.08997 * 109.47495 * 329.99389 * 16 14 12 44 44 H 1.08999 * 109.47005 * 299.99791 * 17 16 14 45 45 H 1.09005 * 109.46849 * 59.99936 * 17 16 14 46 46 H 1.08999 * 109.47079 * 300.00384 * 18 17 16 47 47 H 1.09002 * 109.46681 * 59.99816 * 18 17 16 48 48 H 1.08998 * 109.46693 * 94.63396 * 20 19 18 49 49 H 1.08996 * 109.46922 * 214.63266 * 20 19 18 50 50 H 1.09002 * 109.47491 * 334.63404 * 20 19 18 51 51 H 0.97005 * 119.99598 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1982 1.1955 0.0000 4 6 3.5812 1.1964 0.0058 5 6 4.2766 0.0011 0.0054 6 6 3.5917 -1.1981 0.0002 7 6 4.3504 -2.5002 0.0004 8 6 2.2025 -1.2027 -0.0053 9 7 1.5063 -2.4141 -0.0101 10 6 0.5567 -2.6421 -0.9389 11 8 0.3627 -1.8304 -1.8204 12 6 -0.2569 -3.8933 -0.8837 13 8 -0.0633 -4.7046 -0.0021 14 7 -1.2062 -4.1214 -1.8128 15 6 -1.5466 -3.0784 -2.7837 16 6 -1.8977 -5.4124 -1.8519 17 6 -3.1428 -5.3511 -0.9647 18 6 -3.8653 -6.6991 -1.0060 19 7 -5.0577 -6.6402 -0.1570 20 6 -4.9683 -7.0086 1.2581 21 6 -6.2559 -6.2409 -0.6862 22 1 -6.4887 -6.4558 -1.7186 23 6 -7.1713 -5.5597 0.1044 24 7 -6.8404 -5.1883 1.3229 25 14 -8.8727 -5.1704 -0.5611 26 1 -9.5697 -6.4348 -0.9086 27 1 -9.6536 -4.4429 0.4715 28 1 -8.7477 -4.3243 -1.7751 29 1 -0.3633 0.0779 -1.0248 30 1 -0.3634 -0.9263 0.4448 31 1 -0.3634 0.8485 0.5798 32 1 1.6582 2.1307 -0.0004 33 1 4.1193 2.1328 0.0102 34 1 5.3566 0.0053 0.0095 35 1 4.5293 -2.8163 1.0280 36 1 3.7664 -3.2611 -0.5174 37 1 5.3043 -2.3650 -0.5095 38 1 1.7064 -3.0911 0.6552 39 1 -0.8552 -3.1257 -3.6250 40 1 -2.5647 -3.2330 -3.1410 41 1 -1.4731 -2.1007 -2.3074 42 1 -2.1928 -5.6357 -2.8772 43 1 -1.2302 -6.1933 -1.4877 44 1 -2.8477 -5.1278 0.0606 45 1 -3.8103 -4.5701 -1.3289 46 1 -4.1603 -6.9219 -2.0314 47 1 -3.1978 -7.4803 -0.6421 48 1 -4.8088 -6.1122 1.8574 49 1 -5.8951 -7.4920 1.5669 50 1 -4.1345 -7.6955 1.4028 51 1 -7.4802 -4.7126 1.8755 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001673491395.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:43:45 Heat of formation + Delta-G solvation = -12.005166 kcal Electronic energy + Delta-G solvation = -30816.170042 eV Core-core repulsion = 26716.802679 eV Total energy + Delta-G solvation = -4099.367363 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -41.40844 -39.84236 -38.30050 -36.49646 -35.59011 -34.77046 -33.82062 -32.19731 -31.07391 -30.26282 -27.76501 -26.95129 -26.91812 -26.28160 -25.70288 -24.02635 -22.34335 -21.39384 -21.10404 -20.19026 -19.90009 -18.13962 -17.58799 -16.68231 -16.61730 -16.51280 -15.72661 -15.46510 -15.36532 -14.75170 -14.35283 -14.21387 -14.15191 -14.04836 -13.84382 -13.42187 -13.35430 -13.24047 -13.03876 -12.94048 -12.82373 -12.61895 -12.40360 -12.14787 -11.83875 -11.56310 -11.53350 -11.48467 -11.42058 -11.23554 -10.90875 -10.80941 -10.65452 -10.45026 -10.27920 -10.03665 -9.94856 -9.68229 -9.46420 -8.83606 -8.70639 -8.54155 -8.50997 -6.58497 -5.69096 -3.24500 0.86345 1.08115 1.43476 2.23514 3.10143 3.37899 3.40072 3.43587 3.44132 3.44891 4.19433 4.46111 4.51569 4.51757 4.69274 4.96124 5.08113 5.14421 5.22617 5.23735 5.27920 5.33019 5.39133 5.46709 5.50235 5.53529 5.57771 5.63151 5.78605 5.81611 5.86538 6.01984 6.05567 6.07205 6.10882 6.11493 6.22487 6.24366 6.29545 6.51309 6.56086 6.70304 6.83815 6.84837 6.92228 7.18468 7.21377 7.37173 7.60046 7.80884 7.83369 7.91811 8.49868 9.28461 9.89875 10.44611 11.34230 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.016695 B = 0.002240 C = 0.002136 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1676.707030 B =12495.135922 C =13105.327533 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.067 4.067 3 C -0.114 4.114 4 C -0.116 4.116 5 C -0.116 4.116 6 C -0.090 4.090 7 C -0.117 4.117 8 C 0.134 3.866 9 N -0.650 5.650 10 C 0.508 3.492 11 O -0.494 6.494 12 C 0.502 3.498 13 O -0.518 6.518 14 N -0.578 5.578 15 C 0.075 3.925 16 C 0.113 3.887 17 C -0.149 4.149 18 C 0.156 3.844 19 N -0.600 5.600 20 C 0.160 3.840 21 C -0.258 4.258 22 H 0.063 0.937 23 C 0.008 3.992 24 N -0.903 5.903 25 Si 0.903 3.097 26 H -0.283 1.283 27 H -0.291 1.291 28 H -0.282 1.282 29 H 0.087 0.913 30 H 0.058 0.942 31 H 0.066 0.934 32 H 0.126 0.874 33 H 0.124 0.876 34 H 0.125 0.875 35 H 0.073 0.927 36 H 0.066 0.934 37 H 0.070 0.930 38 H 0.420 0.580 39 H 0.059 0.941 40 H 0.073 0.927 41 H 0.090 0.910 42 H 0.080 0.920 43 H 0.080 0.920 44 H 0.059 0.941 45 H 0.064 0.936 46 H 0.042 0.958 47 H 0.036 0.964 48 H 0.032 0.968 49 H 0.035 0.965 50 H -0.001 1.001 51 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.234 10.180 -4.451 25.754 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.069 4.069 3 C -0.133 4.133 4 C -0.135 4.135 5 C -0.135 4.135 6 C -0.092 4.092 7 C -0.174 4.174 8 C 0.041 3.959 9 N -0.299 5.299 10 C 0.291 3.709 11 O -0.368 6.368 12 C 0.284 3.716 13 O -0.394 6.394 14 N -0.310 5.310 15 C -0.068 4.068 16 C -0.009 4.009 17 C -0.191 4.191 18 C 0.028 3.972 19 N -0.322 5.322 20 C 0.015 3.985 21 C -0.388 4.388 22 H 0.081 0.919 23 C -0.192 4.192 24 N -0.547 5.547 25 Si 0.732 3.268 26 H -0.210 1.210 27 H -0.216 1.216 28 H -0.209 1.209 29 H 0.106 0.894 30 H 0.077 0.923 31 H 0.085 0.915 32 H 0.144 0.856 33 H 0.142 0.858 34 H 0.143 0.857 35 H 0.092 0.908 36 H 0.085 0.915 37 H 0.089 0.911 38 H 0.259 0.741 39 H 0.078 0.922 40 H 0.092 0.908 41 H 0.109 0.891 42 H 0.098 0.902 43 H 0.099 0.901 44 H 0.078 0.922 45 H 0.083 0.917 46 H 0.060 0.940 47 H 0.055 0.945 48 H 0.050 0.950 49 H 0.054 0.946 50 H 0.017 0.983 51 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 23.002 10.335 -4.487 25.613 hybrid contribution -0.908 0.205 0.054 0.932 sum 22.094 10.540 -4.433 24.877 Atomic orbital electron populations 1.20938 0.90647 1.02327 1.03272 1.19911 0.96499 0.91843 0.98647 1.20904 0.94172 0.97115 1.01067 1.21139 0.94177 0.98052 1.00115 1.20851 0.99720 0.91356 1.01554 1.19862 0.91796 0.96306 1.01200 1.20773 0.99943 0.94025 1.02619 1.17258 0.89929 0.84832 1.03851 1.43074 1.36819 1.17473 1.32502 1.20403 0.81060 0.87529 0.81921 1.90734 1.65678 1.46757 1.33622 1.19809 0.81959 0.86775 0.83098 1.90785 1.68367 1.46790 1.33462 1.47829 1.35625 1.16686 1.30866 1.22193 1.00910 0.91474 0.92209 1.21873 0.94855 0.82880 1.01260 1.22627 0.94548 1.02572 0.99334 1.20757 0.88446 0.92951 0.95000 1.43847 1.04265 1.77322 1.06788 1.20805 0.96397 0.96422 0.84870 1.19077 0.92820 1.30120 0.96832 0.91899 1.25286 0.99388 0.97581 0.96906 1.70007 1.34391 1.41665 1.08645 0.86380 0.84265 0.78141 0.77965 1.20974 1.21638 1.20874 0.89430 0.92320 0.91519 0.85601 0.85807 0.85659 0.90790 0.91478 0.91065 0.74111 0.92195 0.90838 0.89130 0.90180 0.90130 0.92183 0.91701 0.93954 0.94539 0.94996 0.94629 0.98261 0.93697 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.31 8.26 36.00 0.30 -1.01 16 2 C -0.07 -0.75 5.49 -104.42 -0.57 -1.32 16 3 C -0.11 -1.06 9.71 -39.61 -0.38 -1.45 16 4 C -0.12 -0.94 10.04 -39.54 -0.40 -1.34 16 5 C -0.12 -0.95 9.70 -39.61 -0.38 -1.33 16 6 C -0.09 -0.84 5.90 -104.42 -0.62 -1.46 16 7 C -0.12 -0.86 9.67 36.01 0.35 -0.51 16 8 C 0.13 1.49 5.82 -83.75 -0.49 1.01 16 9 N -0.65 -7.42 3.88 -10.30 -0.04 -7.46 16 10 C 0.51 6.72 5.97 -11.64 -0.07 6.65 16 11 O -0.49 -6.87 10.37 5.47 0.06 -6.81 16 12 C 0.50 7.53 7.71 -11.64 -0.09 7.44 16 13 O -0.52 -8.85 16.14 5.48 0.09 -8.76 16 14 N -0.58 -8.32 2.87 -182.11 -0.52 -8.84 16 15 C 0.07 0.91 9.25 59.85 0.55 1.47 16 16 C 0.11 1.69 5.33 -4.04 -0.02 1.67 16 17 C -0.15 -2.87 5.86 -26.73 -0.16 -3.03 16 18 C 0.16 3.24 5.71 -4.04 -0.02 3.22 16 19 N -0.60 -15.47 2.90 -181.12 -0.52 -15.99 16 20 C 0.16 4.08 9.05 59.85 0.54 4.62 16 21 C -0.26 -7.17 9.58 -15.06 -0.14 -7.32 16 22 H 0.06 1.70 7.84 -52.49 -0.41 1.29 16 23 C 0.01 0.21 5.23 -17.43 -0.09 0.12 16 24 N -0.90 -26.77 10.93 55.49 0.61 -26.16 16 25 Si 0.90 21.93 29.56 -169.99 -5.02 16.90 16 26 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 27 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 28 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 29 H 0.09 1.05 6.89 -51.93 -0.36 0.70 16 30 H 0.06 0.74 6.44 -51.93 -0.33 0.41 16 31 H 0.07 0.64 8.11 -51.93 -0.42 0.22 16 32 H 0.13 0.94 8.06 -52.49 -0.42 0.52 16 33 H 0.12 0.70 8.06 -52.49 -0.42 0.28 16 34 H 0.13 0.73 8.06 -52.49 -0.42 0.31 16 35 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 36 H 0.07 0.54 7.46 -51.93 -0.39 0.15 16 37 H 0.07 0.43 8.09 -51.93 -0.42 0.01 16 38 H 0.42 4.33 8.16 -40.82 -0.33 4.00 16 39 H 0.06 0.66 8.12 -51.93 -0.42 0.24 16 40 H 0.07 0.85 8.03 -51.93 -0.42 0.44 16 41 H 0.09 1.16 5.88 -51.93 -0.31 0.85 16 42 H 0.08 1.02 8.07 -51.92 -0.42 0.60 16 43 H 0.08 1.20 7.53 -51.93 -0.39 0.81 16 44 H 0.06 1.32 8.14 -51.93 -0.42 0.90 16 45 H 0.06 1.37 8.14 -51.93 -0.42 0.95 16 46 H 0.04 0.83 8.04 -51.93 -0.42 0.41 16 47 H 0.04 0.70 7.86 -51.93 -0.41 0.29 16 48 H 0.03 0.88 7.22 -51.93 -0.37 0.51 16 49 H 0.03 0.95 7.72 -51.93 -0.40 0.55 16 50 H 0.00 -0.03 7.84 -51.93 -0.41 -0.43 16 51 H 0.25 7.28 8.31 -40.82 -0.34 6.94 16 LS Contribution 412.46 15.07 6.22 6.22 Total: -1.00 -32.82 412.46 -9.14 -41.96 By element: Atomic # 1 Polarization: 9.82 SS G_CDS: -8.30 Total: 1.52 kcal Atomic # 6 Polarization: 9.13 SS G_CDS: -1.70 Total: 7.44 kcal Atomic # 7 Polarization: -57.98 SS G_CDS: -0.48 Total: -58.46 kcal Atomic # 8 Polarization: -15.72 SS G_CDS: 0.15 Total: -15.58 kcal Atomic # 14 Polarization: 21.93 SS G_CDS: -5.02 Total: 16.90 kcal Total LS contribution 6.22 Total: 6.22 kcal Total: -32.82 -9.14 -41.96 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001673491395.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.953 kcal (2) G-P(sol) polarization free energy of solvation -32.817 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.864 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.141 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.958 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.005 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds