Wall clock time and date at job start Wed Apr 1 2020 05:43:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.38100 * 120.03772 * 2 1 4 4 C 1.38298 * 120.07357 * 179.72470 * 3 2 1 5 5 C 1.38290 * 120.15385 * 0.29223 * 4 3 2 6 6 C 1.38098 * 120.07695 * 359.96053 * 5 4 3 7 7 C 1.50699 * 120.03754 * 180.02562 * 6 5 4 8 8 C 1.38928 * 119.92269 * 0.02562 * 6 5 4 9 9 N 1.39723 * 120.07577 * 180.02562 * 8 6 5 10 10 C 1.34769 * 120.00559 * 232.39698 * 9 8 6 11 11 O 1.21382 * 119.99978 * 4.51507 * 10 9 8 12 12 C 1.49350 * 120.00570 * 184.51084 * 10 9 8 13 13 O 1.21366 * 119.99713 * 0.03404 * 12 10 9 14 14 N 1.34770 * 120.00292 * 180.02562 * 12 10 9 15 15 C 1.46503 * 120.00128 * 352.98416 * 14 12 10 16 16 C 1.46504 * 119.99935 * 172.98737 * 14 12 10 17 17 C 1.53007 * 109.47122 * 89.99782 * 16 14 12 18 18 C 1.53003 * 109.46985 * 179.97438 * 17 16 14 19 19 N 1.46500 * 109.46843 * 180.02562 * 18 17 16 20 20 C 1.46503 * 119.99802 * 269.99953 * 19 18 17 21 21 C 1.36932 * 120.00049 * 90.00615 * 19 18 17 22 22 H 1.07997 * 120.00342 * 31.91922 * 21 19 18 23 23 C 1.38816 * 120.00025 * 211.92600 * 21 19 18 24 24 N 1.31619 * 119.99459 * 6.31556 * 23 21 19 25 25 Si 1.86792 * 120.00277 * 186.31576 * 23 21 19 26 26 H 1.48503 * 109.47169 * 59.99804 * 25 23 21 27 27 H 1.48503 * 109.47339 * 179.97438 * 25 23 21 28 28 H 1.48505 * 109.47186 * 299.99824 * 25 23 21 29 29 H 1.09004 * 109.46961 * 85.65234 * 1 2 3 30 30 H 1.08997 * 109.47700 * 205.65061 * 1 2 3 31 31 H 1.09004 * 109.47278 * 325.65540 * 1 2 3 32 32 H 1.07992 * 119.96050 * 359.97438 * 3 2 1 33 33 H 1.08002 * 119.91810 * 180.27358 * 4 3 2 34 34 H 1.07998 * 119.96324 * 179.97438 * 5 4 3 35 35 H 1.08995 * 109.47382 * 89.99910 * 7 6 5 36 36 H 1.09006 * 109.47019 * 210.00161 * 7 6 5 37 37 H 1.09000 * 109.47396 * 329.99497 * 7 6 5 38 38 H 0.97004 * 119.99366 * 52.40663 * 9 8 6 39 39 H 1.08993 * 109.46786 * 84.80272 * 15 14 12 40 40 H 1.09003 * 109.47038 * 204.79961 * 15 14 12 41 41 H 1.09004 * 109.46906 * 324.80136 * 15 14 12 42 42 H 1.09008 * 109.47228 * 209.99643 * 16 14 12 43 43 H 1.08997 * 109.47495 * 329.99389 * 16 14 12 44 44 H 1.08999 * 109.47005 * 299.99791 * 17 16 14 45 45 H 1.09005 * 109.46849 * 59.99936 * 17 16 14 46 46 H 1.08999 * 109.47079 * 300.00384 * 18 17 16 47 47 H 1.09002 * 109.46681 * 59.99816 * 18 17 16 48 48 H 1.08998 * 109.46693 * 94.63396 * 20 19 18 49 49 H 1.08996 * 109.46922 * 214.63266 * 20 19 18 50 50 H 1.09002 * 109.47491 * 334.63404 * 20 19 18 51 51 H 0.97005 * 119.99598 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1982 1.1955 0.0000 4 6 3.5812 1.1964 0.0058 5 6 4.2766 0.0011 0.0054 6 6 3.5917 -1.1981 0.0002 7 6 4.3504 -2.5002 0.0004 8 6 2.2025 -1.2027 -0.0053 9 7 1.5063 -2.4141 -0.0101 10 6 0.5567 -2.6421 -0.9389 11 8 0.3627 -1.8304 -1.8204 12 6 -0.2569 -3.8933 -0.8837 13 8 -0.0633 -4.7046 -0.0021 14 7 -1.2062 -4.1214 -1.8128 15 6 -1.5466 -3.0784 -2.7837 16 6 -1.8977 -5.4124 -1.8519 17 6 -3.1428 -5.3511 -0.9647 18 6 -3.8653 -6.6991 -1.0060 19 7 -5.0577 -6.6402 -0.1570 20 6 -4.9683 -7.0086 1.2581 21 6 -6.2559 -6.2409 -0.6862 22 1 -6.4887 -6.4558 -1.7186 23 6 -7.1713 -5.5597 0.1044 24 7 -6.8404 -5.1883 1.3229 25 14 -8.8727 -5.1704 -0.5611 26 1 -9.5697 -6.4348 -0.9086 27 1 -9.6536 -4.4429 0.4715 28 1 -8.7477 -4.3243 -1.7751 29 1 -0.3633 0.0779 -1.0248 30 1 -0.3634 -0.9263 0.4448 31 1 -0.3634 0.8485 0.5798 32 1 1.6582 2.1307 -0.0004 33 1 4.1193 2.1328 0.0102 34 1 5.3566 0.0053 0.0095 35 1 4.5293 -2.8163 1.0280 36 1 3.7664 -3.2611 -0.5174 37 1 5.3043 -2.3650 -0.5095 38 1 1.7064 -3.0911 0.6552 39 1 -0.8552 -3.1257 -3.6250 40 1 -2.5647 -3.2330 -3.1410 41 1 -1.4731 -2.1007 -2.3074 42 1 -2.1928 -5.6357 -2.8772 43 1 -1.2302 -6.1933 -1.4877 44 1 -2.8477 -5.1278 0.0606 45 1 -3.8103 -4.5701 -1.3289 46 1 -4.1603 -6.9219 -2.0314 47 1 -3.1978 -7.4803 -0.6421 48 1 -4.8088 -6.1122 1.8574 49 1 -5.8951 -7.4920 1.5669 50 1 -4.1345 -7.6955 1.4028 51 1 -7.4802 -4.7126 1.8755 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001673491395.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:43:44 Heat of formation + Delta-G solvation = -30.537632 kcal Electronic energy + Delta-G solvation = -30816.973670 eV Core-core repulsion = 26716.802679 eV Total energy + Delta-G solvation = -4100.170991 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -42.39081 -40.80716 -39.29693 -37.99406 -37.10025 -35.80609 -34.54481 -33.99133 -32.09890 -31.80821 -28.63976 -28.21768 -27.85553 -27.60070 -27.43762 -25.34039 -23.76874 -22.27312 -22.08219 -21.82442 -20.92431 -19.15594 -18.77222 -18.52300 -17.68948 -17.52702 -16.95216 -16.60748 -16.38161 -16.13599 -15.82542 -15.46948 -15.23570 -15.09762 -14.91736 -14.76064 -14.65014 -14.33723 -14.14207 -14.03201 -13.90065 -13.70356 -13.49956 -13.24845 -13.08420 -12.89583 -12.73427 -12.63250 -12.53978 -12.51846 -12.39357 -12.29347 -12.21019 -12.17204 -12.08132 -11.91365 -11.39463 -11.12755 -10.65391 -10.57988 -9.90547 -9.53314 -9.33223 -8.66869 -7.82379 -5.41096 -0.00541 0.38105 0.46590 1.20121 1.45614 1.48100 1.54555 1.99644 2.36637 2.50529 2.73092 3.16178 3.31157 3.70830 3.75759 3.84303 4.02130 4.06242 4.23536 4.32805 4.34275 4.40165 4.41439 4.49646 4.52968 4.56896 4.66183 4.68298 4.75592 4.77714 4.80015 4.84398 4.88442 4.89959 4.95322 5.08733 5.16779 5.23271 5.24816 5.28729 5.34135 5.39888 5.51137 5.54614 5.57477 5.64796 5.70426 5.83541 6.03877 6.10552 6.38368 6.56769 6.81509 7.16111 7.85911 8.35449 9.19744 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.016695 B = 0.002240 C = 0.002136 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1676.707030 B =12495.135922 C =13105.327533 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C -0.090 4.090 3 C -0.122 4.122 4 C -0.113 4.113 5 C -0.117 4.117 6 C -0.096 4.096 7 C -0.116 4.116 8 C 0.107 3.893 9 N -0.639 5.639 10 C 0.511 3.489 11 O -0.503 6.503 12 C 0.498 3.502 13 O -0.545 6.545 14 N -0.580 5.580 15 C 0.076 3.924 16 C 0.123 3.877 17 C -0.131 4.131 18 C 0.153 3.847 19 N -0.619 5.619 20 C 0.173 3.827 21 C -0.266 4.266 22 H 0.071 0.929 23 C -0.051 4.051 24 N -0.938 5.938 25 Si 0.969 3.031 26 H -0.275 1.275 27 H -0.297 1.297 28 H -0.272 1.272 29 H 0.076 0.924 30 H 0.037 0.963 31 H 0.078 0.922 32 H 0.141 0.859 33 H 0.153 0.847 34 H 0.153 0.847 35 H 0.085 0.915 36 H 0.055 0.945 37 H 0.088 0.912 38 H 0.423 0.577 39 H 0.077 0.923 40 H 0.081 0.919 41 H 0.082 0.918 42 H 0.113 0.887 43 H 0.084 0.916 44 H 0.023 0.977 45 H 0.041 0.959 46 H 0.061 0.939 47 H 0.055 0.945 48 H 0.001 0.999 49 H 0.013 0.987 50 H 0.029 0.971 51 H 0.247 0.753 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 25.045 10.835 -6.138 27.970 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.092 4.092 3 C -0.141 4.141 4 C -0.131 4.131 5 C -0.135 4.135 6 C -0.098 4.098 7 C -0.172 4.172 8 C 0.015 3.985 9 N -0.288 5.288 10 C 0.294 3.706 11 O -0.378 6.378 12 C 0.280 3.720 13 O -0.423 6.423 14 N -0.312 5.312 15 C -0.065 4.065 16 C 0.001 3.999 17 C -0.172 4.172 18 C 0.026 3.974 19 N -0.342 5.342 20 C 0.028 3.972 21 C -0.396 4.396 22 H 0.089 0.911 23 C -0.246 4.246 24 N -0.584 5.584 25 Si 0.797 3.203 26 H -0.201 1.201 27 H -0.223 1.223 28 H -0.198 1.198 29 H 0.095 0.905 30 H 0.056 0.944 31 H 0.097 0.903 32 H 0.159 0.841 33 H 0.171 0.829 34 H 0.171 0.829 35 H 0.103 0.897 36 H 0.074 0.926 37 H 0.107 0.893 38 H 0.262 0.738 39 H 0.095 0.905 40 H 0.099 0.901 41 H 0.101 0.899 42 H 0.131 0.869 43 H 0.102 0.898 44 H 0.042 0.958 45 H 0.060 0.940 46 H 0.079 0.921 47 H 0.073 0.927 48 H 0.019 0.981 49 H 0.031 0.969 50 H 0.048 0.952 51 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges 24.848 10.994 -6.210 27.872 hybrid contribution -1.359 0.018 0.587 1.480 sum 23.489 11.012 -5.622 26.545 Atomic orbital electron populations 1.20841 0.91482 1.01734 1.02554 1.20050 0.96225 0.92812 1.00077 1.21161 0.95077 0.96993 1.00830 1.21524 0.93752 0.99374 0.98409 1.21241 1.01183 0.90791 1.00271 1.20154 0.91167 0.97804 1.00648 1.20809 1.00221 0.92759 1.03417 1.17525 0.90865 0.84402 1.05707 1.42981 1.36113 1.17839 1.31844 1.20055 0.81384 0.86816 0.82381 1.90724 1.66144 1.46768 1.34196 1.20183 0.82093 0.87100 0.82646 1.90762 1.69272 1.47817 1.34460 1.47914 1.35223 1.16981 1.31039 1.22275 1.01785 0.90435 0.92044 1.21734 0.92873 0.83390 1.01930 1.22310 0.95951 1.00833 0.98094 1.20945 0.87233 0.94062 0.95137 1.44130 1.05567 1.77465 1.07043 1.20550 0.96306 0.95415 0.84965 1.19454 0.93779 1.29272 0.97087 0.91109 1.26088 1.03304 0.98000 0.97228 1.70203 1.35368 1.42864 1.09932 0.85322 0.79635 0.78055 0.77297 1.20118 1.22291 1.19756 0.90535 0.94387 0.90273 0.84098 0.82931 0.82887 0.89678 0.92627 0.89345 0.73780 0.90484 0.90056 0.89921 0.86926 0.89771 0.95769 0.94007 0.92093 0.92660 0.98097 0.96862 0.95215 0.94368 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.57 8.26 71.23 0.59 -1.98 16 2 C -0.09 -1.99 5.49 -19.73 -0.11 -2.10 16 3 C -0.12 -2.10 9.71 22.25 0.22 -1.88 16 4 C -0.11 -1.52 10.04 22.30 0.22 -1.30 16 5 C -0.12 -1.59 9.70 22.25 0.22 -1.38 16 6 C -0.10 -1.67 5.90 -19.73 -0.12 -1.78 16 7 C -0.12 -1.51 9.67 71.24 0.69 -0.82 16 8 C 0.11 2.37 5.82 38.22 0.22 2.59 16 9 N -0.64 -14.95 3.88 -304.84 -1.18 -16.13 16 10 C 0.51 13.82 5.97 87.24 0.52 14.34 16 11 O -0.50 -14.17 10.37 -3.35 -0.03 -14.20 16 12 C 0.50 15.16 7.71 87.24 0.67 15.83 16 13 O -0.54 -19.08 16.14 -3.30 -0.05 -19.14 16 14 N -0.58 -16.47 2.87 -848.43 -2.44 -18.91 16 15 C 0.08 1.81 9.25 127.77 1.18 2.99 16 16 C 0.12 3.51 5.33 86.38 0.46 3.97 16 17 C -0.13 -5.03 5.86 30.60 0.18 -4.85 16 18 C 0.15 6.17 5.71 86.38 0.49 6.66 16 19 N -0.62 -32.02 2.90 -726.93 -2.10 -34.12 16 20 C 0.17 9.02 9.05 127.77 1.16 10.18 16 21 C -0.27 -14.73 9.58 84.04 0.80 -13.93 16 22 H 0.07 3.75 7.84 -2.91 -0.02 3.72 16 23 C -0.05 -2.89 5.23 84.86 0.44 -2.45 16 24 N -0.94 -57.22 10.93 21.65 0.24 -56.98 16 25 Si 0.97 45.38 29.56 68.60 2.03 47.40 16 26 H -0.28 -12.42 7.11 99.48 0.71 -11.72 16 27 H -0.30 -14.06 7.11 99.48 0.71 -13.35 16 28 H -0.27 -12.16 7.11 99.48 0.71 -11.45 16 29 H 0.08 1.92 6.89 -2.38 -0.02 1.91 16 30 H 0.04 1.01 6.44 -2.39 -0.02 1.00 16 31 H 0.08 1.56 8.11 -2.38 -0.02 1.54 16 32 H 0.14 1.88 8.06 -2.91 -0.02 1.85 16 33 H 0.15 1.14 8.06 -2.91 -0.02 1.12 16 34 H 0.15 1.20 8.06 -2.91 -0.02 1.18 16 35 H 0.08 0.92 8.14 -2.39 -0.02 0.90 16 36 H 0.05 0.86 7.46 -2.38 -0.02 0.84 16 37 H 0.09 0.84 8.09 -2.39 -0.02 0.82 16 38 H 0.42 9.06 8.16 -92.71 -0.76 8.30 16 39 H 0.08 1.58 8.12 -2.39 -0.02 1.56 16 40 H 0.08 1.79 8.03 -2.39 -0.02 1.77 16 41 H 0.08 2.12 5.88 -2.39 -0.01 2.11 16 42 H 0.11 2.53 8.07 -2.38 -0.02 2.51 16 43 H 0.08 2.39 7.53 -2.39 -0.02 2.38 16 44 H 0.02 1.08 8.14 -2.39 -0.02 1.06 16 45 H 0.04 1.78 8.14 -2.38 -0.02 1.76 16 46 H 0.06 2.25 8.04 -2.39 -0.02 2.23 16 47 H 0.06 2.03 7.86 -2.39 -0.02 2.01 16 48 H 0.00 0.04 7.22 -2.39 -0.02 0.03 16 49 H 0.01 0.71 7.72 -2.39 -0.02 0.69 16 50 H 0.03 1.33 7.84 -2.39 -0.02 1.31 16 51 H 0.25 14.69 8.31 -92.70 -0.77 13.92 16 Total: -1.00 -72.47 412.46 4.47 -68.01 By element: Atomic # 1 Polarization: 19.81 SS G_CDS: 0.17 Total: 19.98 kcal Atomic # 6 Polarization: 16.24 SS G_CDS: 7.84 Total: 24.09 kcal Atomic # 7 Polarization: -120.65 SS G_CDS: -5.49 Total: -126.14 kcal Atomic # 8 Polarization: -33.25 SS G_CDS: -0.09 Total: -33.34 kcal Atomic # 14 Polarization: 45.38 SS G_CDS: 2.03 Total: 47.40 kcal Total: -72.47 4.47 -68.01 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001673491395.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.469 kcal (2) G-P(sol) polarization free energy of solvation -72.473 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.005 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.467 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.006 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.538 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds