Wall clock time and date at job start Wed Apr 1 2020 04:20:31
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.50704 * 1
3 3 C 1.38387 * 119.85317 * 2 1
4 4 C 1.37939 * 120.14483 * 180.02562 * 3 2 1
5 5 C 1.39593 * 119.85140 * 0.27626 * 4 3 2
6 6 C 1.47851 * 120.14462 * 179.72092 * 5 4 3
7 7 O 1.21548 * 120.00069 * 186.23113 * 6 5 4
8 8 N 1.34779 * 119.99566 * 6.22754 * 6 5 4
9 9 C 1.46497 * 119.99654 * 179.97438 * 8 6 5
10 10 H 1.09003 * 109.47337 * 35.00811 * 9 8 6
11 11 C 1.52999 * 109.47272 * 275.00506 * 9 8 6
12 12 C 1.53001 * 109.46845 * 154.99969 * 9 8 6
13 13 H 1.08994 * 109.47480 * 295.00284 * 12 9 8
14 14 C 1.52999 * 109.46706 * 55.00703 * 12 9 8
15 15 N 1.46904 * 109.46924 * 175.00197 * 12 9 8
16 16 C 1.46902 * 111.00148 * 155.00608 * 15 12 9
17 17 C 1.50699 * 109.47221 * 179.97438 * 16 15 12
18 18 O 1.21290 * 119.99655 * 359.97438 * 17 16 15
19 19 N 1.34773 * 119.99775 * 179.97438 * 17 16 15
20 20 C 1.37101 * 120.00016 * 179.97438 * 19 17 16
21 21 H 1.07995 * 119.99645 * 0.02562 * 20 19 17
22 22 C 1.38951 * 120.00106 * 180.02562 * 20 19 17
23 23 N 1.31413 * 119.99865 * 180.02562 * 22 20 19
24 24 Si 1.86799 * 120.00006 * 0.02562 * 22 20 19
25 25 H 1.48503 * 109.46811 * 90.00083 * 24 22 20
26 26 H 1.48502 * 109.47270 * 209.99830 * 24 22 20
27 27 H 1.48494 * 109.47291 * 330.00576 * 24 22 20
28 28 C 1.39557 * 119.71181 * 359.47358 * 5 4 3
29 29 C 1.50706 * 120.07411 * 180.23457 * 28 5 4
30 30 C 1.37980 * 119.85425 * 0.49996 * 28 5 4
31 31 H 1.09002 * 109.46624 * 90.00257 * 1 2 3
32 32 H 1.08995 * 109.46777 * 210.00391 * 1 2 3
33 33 H 1.08998 * 109.46681 * 330.00536 * 1 2 3
34 34 H 1.07995 * 119.92853 * 0.04130 * 3 2 1
35 35 H 1.07994 * 120.06992 * 179.97438 * 4 3 2
36 36 H 0.96999 * 119.99939 * 0.02562 * 8 6 5
37 37 H 1.08995 * 109.47233 * 60.00310 * 11 9 8
38 38 H 1.09001 * 109.46695 * 180.02562 * 11 9 8
39 39 H 1.09003 * 109.46832 * 299.99705 * 11 9 8
40 40 H 1.09008 * 109.46919 * 179.97438 * 14 12 9
41 41 H 1.09004 * 109.47145 * 299.99311 * 14 12 9
42 42 H 1.08996 * 109.47736 * 60.00070 * 14 12 9
43 43 H 1.00898 * 111.00442 * 31.04405 * 15 12 9
44 44 H 1.09006 * 109.46531 * 300.00121 * 16 15 12
45 45 H 1.09001 * 109.47067 * 59.99852 * 16 15 12
46 46 H 0.97006 * 119.99970 * 0.02562 * 19 17 16
47 47 H 0.97000 * 119.99835 * 180.02562 * 23 22 20
48 48 H 1.09002 * 109.46932 * 276.85265 * 29 28 5
49 49 H 1.08999 * 109.47061 * 36.84819 * 29 28 5
50 50 H 1.09003 * 109.47370 * 156.85180 * 29 28 5
51 51 H 1.08003 * 119.92644 * 179.74310 * 30 28 5
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5070 0.0000 0.0000
3 6 2.1959 1.2002 0.0000
4 6 3.5753 1.2073 -0.0005
5 6 4.2762 0.0001 -0.0069
6 6 5.7547 0.0001 -0.0137
7 8 6.3619 -1.0460 -0.1335
8 7 6.4292 1.1601 0.1128
9 6 7.8941 1.1601 0.1066
10 1 8.2546 0.3889 -0.5742
11 6 8.4101 0.8757 1.5186
12 6 8.4021 2.5270 -0.3566
13 1 8.1094 2.6912 -1.3935
14 6 7.7959 3.6214 0.5240
15 7 9.8667 2.5671 -0.2490
16 6 10.4365 3.5469 -1.1835
17 6 11.9370 3.5603 -1.0442
18 8 12.4783 2.8262 -0.2448
19 7 12.6773 4.3879 -1.8080
20 6 14.0423 4.4005 -1.6810
21 1 14.5244 3.7469 -0.9691
22 6 14.8056 5.2541 -2.4681
23 7 16.1140 5.2658 -2.3466
24 14 13.9717 6.3852 -3.6988
25 1 13.6508 7.6788 -3.0438
26 1 14.8821 6.6244 -4.8473
27 1 12.7191 5.7518 -4.1835
28 6 3.5755 -1.2067 -0.0016
29 6 4.3240 -2.5147 -0.0031
30 6 2.1957 -1.1998 -0.0005
31 1 -0.3633 0.0000 -1.0277
32 1 -0.3633 -0.8899 0.5139
33 1 -0.3632 0.8900 0.5138
34 1 1.6524 2.1334 0.0007
35 1 4.1116 2.1446 -0.0010
36 1 5.9445 1.9949 0.2087
37 1 8.0482 -0.0981 1.8484
38 1 9.5001 0.8762 1.5139
39 1 8.0497 1.6470 2.1993
40 1 8.1582 4.5952 0.1944
41 1 6.7092 3.5916 0.4442
42 1 8.0887 3.4573 1.5610
43 1 10.2654 1.6521 -0.3967
44 1 10.1683 3.2740 -2.2042
45 1 10.0421 4.5374 -0.9567
46 1 12.2442 4.9753 -2.4471
47 1 16.6468 5.8620 -2.8958
48 1 4.6060 -2.7708 -1.0244
49 1 5.2212 -2.4206 0.6088
50 1 3.6863 -3.2988 0.4053
51 1 1.6521 -2.1331 -0.0005
RHF calculation, no. of doubly occupied orbitals= 66
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001674767682.mol2 51
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 04:20:31
Heat of formation + Delta-G solvation = -46.095016 kcal
Electronic energy + Delta-G solvation = -29763.318570 eV
Core-core repulsion = 25662.472960 eV
Total energy + Delta-G solvation = -4100.845610 eV
No. of doubly occupied orbitals = 66
Molecular weight
(most abundant/longest-lived isotopes) = 347.200 amu
Computer time = 1.57 seconds
Orbital eigenvalues (eV)
-40.82600 -39.26414 -38.51397 -37.38286 -34.69841 -33.89673 -33.73200 -32.65515
-31.67495 -30.86100 -29.25804 -27.83328 -27.36930 -26.74428 -24.63832 -23.62935
-22.99320 -21.70322 -20.55119 -19.82677 -19.42341 -18.52362 -18.07275 -16.64618
-16.12677 -15.70396 -15.62240 -15.46265 -15.40930 -15.24863 -14.91292 -14.64164
-14.25402 -13.93124 -13.81435 -13.60285 -13.53126 -13.38953 -13.16893 -12.89068
-12.83637 -12.55127 -12.40239 -12.26206 -12.13637 -12.07583 -12.06171 -11.97865
-11.88057 -11.55975 -11.44294 -11.21450 -10.99480 -10.75177 -10.60236 -9.98003
-9.82713 -9.57658 -9.35898 -9.24508 -8.96516 -8.60054 -8.23721 -8.17323
-6.31284 -3.82745 0.46493 0.93788 2.57066 2.85039 3.01723 3.06156
3.14487 3.44382 3.73413 4.06930 4.10737 4.26174 4.28297 4.42752
4.46307 4.56661 4.73833 4.81725 4.86585 4.91767 5.07981 5.09299
5.13851 5.18101 5.21262 5.35875 5.38272 5.48038 5.48976 5.51131
5.56927 5.58038 5.63295 5.72256 5.78608 5.82353 5.84407 5.89133
5.91909 5.95647 6.08227 6.13362 6.23932 6.35057 6.40700 6.49439
7.02880 7.26283 7.50249 7.57818 7.99308 8.14315 8.59353 8.94779
9.42106 9.82167 10.81837
Molecular weight = 347.20amu
Principal moments of inertia in cm(-1)
A = 0.022413 B = 0.001741 C = 0.001681
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1248.997117 B =16075.294224 C =16657.124311
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.119 4.119
2 C -0.057 4.057
3 C -0.137 4.137
4 C -0.078 4.078
5 C -0.146 4.146
6 C 0.558 3.442
7 O -0.529 6.529
8 N -0.719 5.719
9 C 0.142 3.858
10 H 0.088 0.912
11 C -0.157 4.157
12 C 0.076 3.924
13 H 0.047 0.953
14 C -0.144 4.144
15 N -0.656 5.656
16 C 0.048 3.952
17 C 0.450 3.550
18 O -0.563 6.563
19 N -0.591 5.591
20 C -0.305 4.305
21 H 0.120 0.880
22 C 0.041 3.959
23 N -0.881 5.881
24 Si 0.880 3.120
25 H -0.271 1.271
26 H -0.277 1.277
27 H -0.270 1.270
28 C -0.017 4.017
29 C -0.122 4.122
30 C -0.134 4.134
31 H 0.074 0.926
32 H 0.069 0.931
33 H 0.069 0.931
34 H 0.128 0.872
35 H 0.125 0.875
36 H 0.398 0.602
37 H 0.053 0.947
38 H 0.082 0.918
39 H 0.059 0.941
40 H 0.061 0.939
41 H 0.048 0.952
42 H 0.071 0.929
43 H 0.353 0.647
44 H 0.045 0.955
45 H 0.088 0.912
46 H 0.370 0.630
47 H 0.273 0.727
48 H 0.076 0.924
49 H 0.096 0.904
50 H 0.056 0.944
51 H 0.128 0.872
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -33.932 -7.242 3.112 34.835
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.176 4.176
2 C -0.058 4.058
3 C -0.155 4.155
4 C -0.096 4.096
5 C -0.149 4.149
6 C 0.346 3.654
7 O -0.407 6.407
8 N -0.373 5.373
9 C 0.038 3.962
10 H 0.106 0.894
11 C -0.216 4.216
12 C -0.035 4.035
13 H 0.065 0.935
14 C -0.202 4.202
15 N -0.290 5.290
16 C -0.085 4.085
17 C 0.236 3.764
18 O -0.445 6.445
19 N -0.230 5.230
20 C -0.434 4.434
21 H 0.137 0.863
22 C -0.161 4.161
23 N -0.521 5.521
24 Si 0.706 3.294
25 H -0.196 1.196
26 H -0.202 1.202
27 H -0.196 1.196
28 C -0.018 4.018
29 C -0.178 4.178
30 C -0.152 4.152
31 H 0.093 0.907
32 H 0.088 0.912
33 H 0.088 0.912
34 H 0.145 0.855
35 H 0.143 0.857
36 H 0.235 0.765
37 H 0.072 0.928
38 H 0.101 0.899
39 H 0.078 0.922
40 H 0.080 0.920
41 H 0.066 0.934
42 H 0.090 0.910
43 H 0.174 0.826
44 H 0.063 0.937
45 H 0.106 0.894
46 H 0.203 0.797
47 H 0.084 0.916
48 H 0.094 0.906
49 H 0.115 0.885
50 H 0.075 0.925
51 H 0.146 0.854
Dipole moment (debyes) X Y Z Total
from point charges -32.869 -7.969 4.032 34.060
hybrid contribution -0.864 1.181 -1.954 2.441
sum -33.732 -6.788 2.078 34.471
Atomic orbital electron populations
1.20871 0.90840 1.03150 1.02704 1.20141 0.96346 0.93086 0.96192
1.20953 0.93816 0.97848 1.02883 1.21266 0.94546 0.96840 0.96972
1.19790 0.92814 0.93992 1.08286 1.18260 0.87013 0.83798 0.76356
1.90739 1.69962 1.30748 1.49283 1.46101 1.07320 1.09305 1.74583
1.21088 0.78812 0.97274 0.99069 0.89356 1.22129 1.02937 1.01291
0.95203 1.21724 0.89386 0.94204 0.98153 0.93461 1.21890 0.98269
0.98642 1.01430 1.60176 1.02047 1.12484 1.54297 1.21772 0.94804
0.97763 0.94160 1.19673 0.87657 0.84420 0.84674 1.90571 1.72868
1.42926 1.38122 1.42202 1.07689 1.36981 1.36134 1.19437 0.79296
1.22555 1.22103 0.86255 1.25038 0.95358 0.97795 0.97954 1.69623
1.04053 1.38223 1.40195 0.86670 0.79444 0.81569 0.81676 1.19612
1.20193 1.19565 1.20065 0.93356 0.94961 0.93402 1.21096 1.00856
0.92068 1.03790 1.20956 0.93177 0.97924 1.03127 0.90723 0.91224
0.91193 0.85451 0.85697 0.76533 0.92755 0.89913 0.92166 0.92034
0.93364 0.90992 0.82602 0.93694 0.89415 0.79721 0.91618 0.90561
0.88535 0.92462 0.85410
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.12 -0.48 10.01 36.01 0.36 -0.12 16
2 C -0.06 -0.38 5.89 -104.53 -0.62 -0.99 16
3 C -0.14 -0.89 9.68 -39.64 -0.38 -1.27 16
4 C -0.08 -0.57 9.53 -39.19 -0.37 -0.94 16
5 C -0.15 -1.41 5.87 -104.97 -0.62 -2.02 16
6 C 0.56 6.31 7.67 -12.33 -0.09 6.22 16
7 O -0.53 -7.51 13.02 5.32 0.07 -7.45 16
8 N -0.72 -6.80 4.94 -54.75 -0.27 -7.07 16
9 C 0.14 1.56 2.30 -67.93 -0.16 1.40 16
10 H 0.09 1.12 7.58 -51.93 -0.39 0.73 16
11 C -0.16 -1.82 9.02 37.16 0.34 -1.49 16
12 C 0.08 0.84 2.66 -67.71 -0.18 0.66 16
13 H 0.05 0.50 7.80 -51.93 -0.40 0.10 16
14 C -0.14 -1.36 8.93 37.16 0.33 -1.03 16
15 N -0.66 -9.59 5.13 -107.99 -0.55 -10.14 16
16 C 0.05 0.76 5.97 -4.98 -0.03 0.73 16
17 C 0.45 10.08 7.82 -10.99 -0.09 9.99 16
18 O -0.56 -14.97 15.78 5.55 0.09 -14.88 16
19 N -0.59 -13.97 5.09 -10.97 -0.06 -14.03 16
20 C -0.31 -8.63 10.16 -14.93 -0.15 -8.78 16
21 H 0.12 3.86 7.39 -52.49 -0.39 3.47 16
22 C 0.04 1.14 5.50 -17.47 -0.10 1.04 16
23 N -0.88 -25.75 13.96 55.50 0.77 -24.97 16
24 Si 0.88 19.31 27.74 -169.99 -4.71 14.59 16
25 H -0.27 -5.81 7.11 56.52 0.40 -5.41 16
26 H -0.28 -6.10 7.11 56.52 0.40 -5.69 16
27 H -0.27 -5.39 6.52 56.52 0.37 -5.02 16
28 C -0.02 -0.16 5.91 -104.22 -0.62 -0.77 16
29 C -0.12 -1.14 8.72 36.01 0.31 -0.83 16
30 C -0.13 -1.01 9.31 -39.64 -0.37 -1.38 16
31 H 0.07 0.26 8.14 -51.93 -0.42 -0.17 16
32 H 0.07 0.23 8.08 -51.93 -0.42 -0.19 16
33 H 0.07 0.22 8.08 -51.93 -0.42 -0.20 16
34 H 0.13 0.55 8.06 -52.49 -0.42 0.13 16
35 H 0.13 0.64 6.45 -52.49 -0.34 0.30 16
36 H 0.40 2.83 4.65 -40.82 -0.19 2.64 16
37 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16
38 H 0.08 1.07 7.17 -51.93 -0.37 0.70 16
39 H 0.06 0.65 6.57 -51.93 -0.34 0.31 16
40 H 0.06 0.61 7.45 -51.92 -0.39 0.22 16
41 H 0.05 0.33 6.29 -51.93 -0.33 0.00 16
42 H 0.07 0.74 6.56 -51.93 -0.34 0.40 16
43 H 0.35 5.51 7.62 -39.29 -0.30 5.21 16
44 H 0.05 0.64 8.06 -51.93 -0.42 0.22 16
45 H 0.09 1.24 7.44 -51.93 -0.39 0.86 16
46 H 0.37 7.67 5.76 -40.82 -0.24 7.43 16
47 H 0.27 7.37 8.31 -40.82 -0.34 7.03 16
48 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16
49 H 0.10 1.10 5.88 -51.93 -0.31 0.79 16
50 H 0.06 0.42 8.04 -51.93 -0.42 0.00 16
51 H 0.13 0.72 8.06 -52.48 -0.42 0.30 16
LS Contribution 407.04 15.07 6.13 6.13
Total: -1.00 -34.08 407.04 -8.62 -42.70
By element:
Atomic # 1 Polarization: 22.37 SS G_CDS: -7.67 Total: 14.71 kcal
Atomic # 6 Polarization: 2.84 SS G_CDS: -2.43 Total: 0.41 kcal
Atomic # 7 Polarization: -56.11 SS G_CDS: -0.11 Total: -56.22 kcal
Atomic # 8 Polarization: -22.48 SS G_CDS: 0.16 Total: -22.33 kcal
Atomic # 14 Polarization: 19.31 SS G_CDS: -4.71 Total: 14.59 kcal
Total LS contribution 6.13 Total: 6.13 kcal
Total: -34.08 -8.62 -42.70 kcal
The number of atoms in the molecule is 51
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001674767682.mol2 51
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -3.396 kcal
(2) G-P(sol) polarization free energy of solvation -34.075 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.472 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.623 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.699 kcal
(6) G-S(sol) free energy of system = (1) + (5) -46.095 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.57 seconds