Wall clock time and date at job start Wed Apr 1 2020 04:20:30
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.50704 * 1
3 3 C 1.38387 * 119.85317 * 2 1
4 4 C 1.37939 * 120.14483 * 180.02562 * 3 2 1
5 5 C 1.39593 * 119.85140 * 0.27626 * 4 3 2
6 6 C 1.47851 * 120.14462 * 179.72092 * 5 4 3
7 7 O 1.21548 * 120.00069 * 186.23113 * 6 5 4
8 8 N 1.34779 * 119.99566 * 6.22754 * 6 5 4
9 9 C 1.46497 * 119.99654 * 179.97438 * 8 6 5
10 10 H 1.09003 * 109.47337 * 35.00811 * 9 8 6
11 11 C 1.52999 * 109.47272 * 275.00506 * 9 8 6
12 12 C 1.53001 * 109.46845 * 154.99969 * 9 8 6
13 13 H 1.08994 * 109.47480 * 295.00284 * 12 9 8
14 14 C 1.52999 * 109.46706 * 55.00703 * 12 9 8
15 15 N 1.46904 * 109.46924 * 175.00197 * 12 9 8
16 16 C 1.46902 * 111.00148 * 155.00608 * 15 12 9
17 17 C 1.50699 * 109.47221 * 179.97438 * 16 15 12
18 18 O 1.21290 * 119.99655 * 359.97438 * 17 16 15
19 19 N 1.34773 * 119.99775 * 179.97438 * 17 16 15
20 20 C 1.37101 * 120.00016 * 179.97438 * 19 17 16
21 21 H 1.07995 * 119.99645 * 0.02562 * 20 19 17
22 22 C 1.38951 * 120.00106 * 180.02562 * 20 19 17
23 23 N 1.31413 * 119.99865 * 180.02562 * 22 20 19
24 24 Si 1.86799 * 120.00006 * 0.02562 * 22 20 19
25 25 H 1.48503 * 109.46811 * 90.00083 * 24 22 20
26 26 H 1.48502 * 109.47270 * 209.99830 * 24 22 20
27 27 H 1.48494 * 109.47291 * 330.00576 * 24 22 20
28 28 C 1.39557 * 119.71181 * 359.47358 * 5 4 3
29 29 C 1.50706 * 120.07411 * 180.23457 * 28 5 4
30 30 C 1.37980 * 119.85425 * 0.49996 * 28 5 4
31 31 H 1.09002 * 109.46624 * 90.00257 * 1 2 3
32 32 H 1.08995 * 109.46777 * 210.00391 * 1 2 3
33 33 H 1.08998 * 109.46681 * 330.00536 * 1 2 3
34 34 H 1.07995 * 119.92853 * 0.04130 * 3 2 1
35 35 H 1.07994 * 120.06992 * 179.97438 * 4 3 2
36 36 H 0.96999 * 119.99939 * 0.02562 * 8 6 5
37 37 H 1.08995 * 109.47233 * 60.00310 * 11 9 8
38 38 H 1.09001 * 109.46695 * 180.02562 * 11 9 8
39 39 H 1.09003 * 109.46832 * 299.99705 * 11 9 8
40 40 H 1.09008 * 109.46919 * 179.97438 * 14 12 9
41 41 H 1.09004 * 109.47145 * 299.99311 * 14 12 9
42 42 H 1.08996 * 109.47736 * 60.00070 * 14 12 9
43 43 H 1.00898 * 111.00442 * 31.04405 * 15 12 9
44 44 H 1.09006 * 109.46531 * 300.00121 * 16 15 12
45 45 H 1.09001 * 109.47067 * 59.99852 * 16 15 12
46 46 H 0.97006 * 119.99970 * 0.02562 * 19 17 16
47 47 H 0.97000 * 119.99835 * 180.02562 * 23 22 20
48 48 H 1.09002 * 109.46932 * 276.85265 * 29 28 5
49 49 H 1.08999 * 109.47061 * 36.84819 * 29 28 5
50 50 H 1.09003 * 109.47370 * 156.85180 * 29 28 5
51 51 H 1.08003 * 119.92644 * 179.74310 * 30 28 5
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5070 0.0000 0.0000
3 6 2.1959 1.2002 0.0000
4 6 3.5753 1.2073 -0.0005
5 6 4.2762 0.0001 -0.0069
6 6 5.7547 0.0001 -0.0137
7 8 6.3619 -1.0460 -0.1335
8 7 6.4292 1.1601 0.1128
9 6 7.8941 1.1601 0.1066
10 1 8.2546 0.3889 -0.5742
11 6 8.4101 0.8757 1.5186
12 6 8.4021 2.5270 -0.3566
13 1 8.1094 2.6912 -1.3935
14 6 7.7959 3.6214 0.5240
15 7 9.8667 2.5671 -0.2490
16 6 10.4365 3.5469 -1.1835
17 6 11.9370 3.5603 -1.0442
18 8 12.4783 2.8262 -0.2448
19 7 12.6773 4.3879 -1.8080
20 6 14.0423 4.4005 -1.6810
21 1 14.5244 3.7469 -0.9691
22 6 14.8056 5.2541 -2.4681
23 7 16.1140 5.2658 -2.3466
24 14 13.9717 6.3852 -3.6988
25 1 13.6508 7.6788 -3.0438
26 1 14.8821 6.6244 -4.8473
27 1 12.7191 5.7518 -4.1835
28 6 3.5755 -1.2067 -0.0016
29 6 4.3240 -2.5147 -0.0031
30 6 2.1957 -1.1998 -0.0005
31 1 -0.3633 0.0000 -1.0277
32 1 -0.3633 -0.8899 0.5139
33 1 -0.3632 0.8900 0.5138
34 1 1.6524 2.1334 0.0007
35 1 4.1116 2.1446 -0.0010
36 1 5.9445 1.9949 0.2087
37 1 8.0482 -0.0981 1.8484
38 1 9.5001 0.8762 1.5139
39 1 8.0497 1.6470 2.1993
40 1 8.1582 4.5952 0.1944
41 1 6.7092 3.5916 0.4442
42 1 8.0887 3.4573 1.5610
43 1 10.2654 1.6521 -0.3967
44 1 10.1683 3.2740 -2.2042
45 1 10.0421 4.5374 -0.9567
46 1 12.2442 4.9753 -2.4471
47 1 16.6468 5.8620 -2.8958
48 1 4.6060 -2.7708 -1.0244
49 1 5.2212 -2.4206 0.6088
50 1 3.6863 -3.2988 0.4053
51 1 1.6521 -2.1331 -0.0005
RHF calculation, no. of doubly occupied orbitals= 66
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001674767682.mol2 51
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 04:20:30
Heat of formation + Delta-G solvation = -70.783940 kcal
Electronic energy + Delta-G solvation = -29764.389162 eV
Core-core repulsion = 25662.472960 eV
Total energy + Delta-G solvation = -4101.916202 eV
No. of doubly occupied orbitals = 66
Molecular weight
(most abundant/longest-lived isotopes) = 347.200 amu
Computer time = 1.43 seconds
Orbital eigenvalues (eV)
-41.57905 -40.40686 -39.77549 -38.45524 -36.11606 -35.49737 -34.29290 -33.76175
-33.35406 -31.77896 -30.13591 -28.40654 -28.23127 -27.96273 -26.02333 -24.87093
-23.60340 -22.43410 -21.30488 -21.25408 -20.70575 -20.31436 -18.96955 -17.74182
-17.43491 -16.92887 -16.76758 -16.35070 -16.23368 -16.18403 -15.91927 -15.66079
-15.43903 -15.05658 -14.78106 -14.68677 -14.48384 -14.34261 -14.08792 -14.04212
-13.97548 -13.61615 -13.50949 -13.31251 -13.09705 -13.06727 -12.86629 -12.78476
-12.59646 -12.52440 -12.50849 -12.41108 -11.97625 -11.95841 -11.92372 -11.66716
-11.50788 -10.68883 -10.43970 -10.24433 -10.20491 -9.79133 -9.55702 -9.38222
-8.40930 -6.02020 -0.14334 0.39681 1.30312 1.36132 1.44925 1.83876
1.95946 2.01678 2.23478 2.76436 2.83019 3.15297 3.38573 3.58646
3.70539 3.80603 3.88641 3.93523 3.98931 4.13736 4.20723 4.36128
4.39466 4.42137 4.46078 4.55283 4.63312 4.64436 4.72405 4.76511
4.79303 4.81648 4.84585 4.87183 4.96647 5.03839 5.04012 5.20348
5.26560 5.27984 5.32224 5.47953 5.50467 5.53737 5.59006 5.60518
5.90151 5.97034 6.03273 6.30639 6.50733 6.59984 6.88513 7.19584
7.40107 7.97057 8.76770
Molecular weight = 347.20amu
Principal moments of inertia in cm(-1)
A = 0.022413 B = 0.001741 C = 0.001681
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1248.997117 B =16075.294224 C =16657.124311
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.118 4.118
2 C -0.057 4.057
3 C -0.139 4.139
4 C -0.076 4.076
5 C -0.168 4.168
6 C 0.553 3.447
7 O -0.568 6.568
8 N -0.705 5.705
9 C 0.150 3.850
10 H 0.067 0.933
11 C -0.150 4.150
12 C 0.083 3.917
13 H 0.064 0.936
14 C -0.144 4.144
15 N -0.672 5.672
16 C 0.063 3.937
17 C 0.448 3.552
18 O -0.614 6.614
19 N -0.591 5.591
20 C -0.330 4.330
21 H 0.054 0.946
22 C -0.016 4.016
23 N -0.935 5.935
24 Si 0.966 3.034
25 H -0.256 1.256
26 H -0.276 1.276
27 H -0.231 1.231
28 C -0.038 4.038
29 C -0.117 4.117
30 C -0.141 4.141
31 H 0.083 0.917
32 H 0.075 0.925
33 H 0.082 0.918
34 H 0.155 0.845
35 H 0.149 0.851
36 H 0.412 0.588
37 H 0.041 0.959
38 H 0.064 0.936
39 H 0.071 0.929
40 H 0.064 0.936
41 H 0.080 0.920
42 H 0.060 0.940
43 H 0.343 0.657
44 H 0.076 0.924
45 H 0.119 0.881
46 H 0.390 0.610
47 H 0.279 0.721
48 H 0.065 0.935
49 H 0.071 0.929
50 H 0.074 0.926
51 H 0.142 0.858
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -38.845 -4.546 1.527 39.140
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.175 4.175
2 C -0.057 4.057
3 C -0.156 4.156
4 C -0.094 4.094
5 C -0.171 4.171
6 C 0.343 3.657
7 O -0.449 6.449
8 N -0.359 5.359
9 C 0.044 3.956
10 H 0.085 0.915
11 C -0.208 4.208
12 C -0.027 4.027
13 H 0.082 0.918
14 C -0.202 4.202
15 N -0.306 5.306
16 C -0.070 4.070
17 C 0.236 3.764
18 O -0.498 6.498
19 N -0.232 5.232
20 C -0.459 4.459
21 H 0.072 0.928
22 C -0.214 4.214
23 N -0.575 5.575
24 Si 0.786 3.214
25 H -0.180 1.180
26 H -0.201 1.201
27 H -0.154 1.154
28 C -0.039 4.039
29 C -0.173 4.173
30 C -0.159 4.159
31 H 0.102 0.898
32 H 0.094 0.906
33 H 0.101 0.899
34 H 0.173 0.827
35 H 0.167 0.833
36 H 0.252 0.748
37 H 0.060 0.940
38 H 0.082 0.918
39 H 0.090 0.910
40 H 0.083 0.917
41 H 0.098 0.902
42 H 0.079 0.921
43 H 0.163 0.837
44 H 0.093 0.907
45 H 0.136 0.864
46 H 0.226 0.774
47 H 0.088 0.912
48 H 0.083 0.917
49 H 0.090 0.910
50 H 0.093 0.907
51 H 0.160 0.840
Dipole moment (debyes) X Y Z Total
from point charges -37.836 -5.247 2.456 38.277
hybrid contribution 0.642 0.229 -1.338 1.502
sum -37.194 -5.018 1.118 37.548
Atomic orbital electron populations
1.20936 0.88852 1.04169 1.03520 1.20525 0.97851 0.92759 0.94573
1.21332 0.93587 0.98969 1.01731 1.21534 0.95179 0.96739 0.95977
1.19779 0.91649 0.95249 1.10469 1.18657 0.87954 0.83524 0.75598
1.90728 1.70888 1.32172 1.51127 1.45897 1.06479 1.09592 1.73957
1.20859 0.79749 0.97019 0.97932 0.91469 1.22032 1.01690 1.00991
0.96120 1.21760 0.86994 0.94434 0.99507 0.91833 1.21917 1.00228
0.97786 1.00227 1.60213 1.04258 1.11760 1.54344 1.21695 0.89239
0.99822 0.96208 1.20983 0.90492 0.82283 0.82620 1.90553 1.74754
1.44554 1.39931 1.42018 1.05918 1.38075 1.37234 1.19012 0.81828
1.22884 1.22191 0.92775 1.26133 0.95881 0.99308 1.00083 1.69811
1.06429 1.39570 1.41734 0.85350 0.79496 0.78829 0.77736 1.18017
1.20137 1.15413 1.20191 0.94358 0.94693 0.94674 1.20976 1.00293
0.93327 1.02695 1.21162 0.92437 0.99287 1.03007 0.89848 0.90575
0.89901 0.82732 0.83347 0.74848 0.94017 0.91754 0.91034 0.91737
0.90153 0.92107 0.83738 0.90662 0.86359 0.77446 0.91168 0.91679
0.91043 0.90705 0.83975
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.12 -0.55 10.01 71.24 0.71 0.16 16
2 C -0.06 -0.59 5.89 -19.80 -0.12 -0.70 16
3 C -0.14 -1.32 9.68 22.23 0.22 -1.10 16
4 C -0.08 -0.90 9.53 22.53 0.21 -0.69 16
5 C -0.17 -3.10 5.87 -20.09 -0.12 -3.22 16
6 C 0.55 12.50 7.67 86.79 0.67 13.16 16
7 O -0.57 -17.05 13.02 -3.87 -0.05 -17.10 16
8 N -0.70 -12.33 4.94 -445.41 -2.20 -14.53 16
9 C 0.15 3.20 2.30 44.99 0.10 3.30 16
10 H 0.07 1.75 7.58 -2.39 -0.02 1.74 16
11 C -0.15 -3.56 9.02 71.98 0.65 -2.91 16
12 C 0.08 1.62 2.66 44.91 0.12 1.74 16
13 H 0.06 1.10 7.80 -2.39 -0.02 1.08 16
14 C -0.14 -2.20 8.93 71.98 0.64 -1.56 16
15 N -0.67 -18.85 5.13 -495.56 -2.54 -21.39 16
16 C 0.06 1.83 5.97 85.56 0.51 2.34 16
17 C 0.45 20.04 7.82 87.66 0.69 20.73 16
18 O -0.61 -34.04 15.78 -3.06 -0.05 -34.09 16
19 N -0.59 -27.68 5.09 -306.99 -1.56 -29.24 16
20 C -0.33 -19.41 10.16 84.04 0.85 -18.55 16
21 H 0.05 3.81 7.39 -2.91 -0.02 3.78 16
22 C -0.02 -0.86 5.50 84.93 0.47 -0.40 16
23 N -0.93 -56.60 13.96 21.66 0.30 -56.30 16
24 Si 0.97 38.56 27.74 68.60 1.90 40.47 16
25 H -0.26 -9.63 7.11 99.48 0.71 -8.92 16
26 H -0.28 -11.00 7.11 99.48 0.71 -10.29 16
27 H -0.23 -7.69 6.52 99.48 0.65 -7.04 16
28 C -0.04 -0.70 5.91 -19.61 -0.12 -0.82 16
29 C -0.12 -2.31 8.72 71.24 0.62 -1.69 16
30 C -0.14 -1.90 9.31 22.23 0.21 -1.70 16
31 H 0.08 0.29 8.14 -2.39 -0.02 0.27 16
32 H 0.08 0.28 8.08 -2.39 -0.02 0.26 16
33 H 0.08 0.20 8.08 -2.39 -0.02 0.18 16
34 H 0.16 0.61 8.06 -2.91 -0.02 0.59 16
35 H 0.15 0.92 6.45 -2.91 -0.02 0.90 16
36 H 0.41 4.58 4.65 -92.71 -0.43 4.15 16
37 H 0.04 1.07 8.14 -2.39 -0.02 1.05 16
38 H 0.06 1.76 7.17 -2.39 -0.02 1.74 16
39 H 0.07 1.50 6.57 -2.39 -0.02 1.49 16
40 H 0.06 0.99 7.45 -2.38 -0.02 0.97 16
41 H 0.08 0.71 6.29 -2.38 -0.02 0.69 16
42 H 0.06 1.10 6.56 -2.39 -0.02 1.08 16
43 H 0.34 10.84 7.62 -89.70 -0.68 10.16 16
44 H 0.08 1.82 8.06 -2.38 -0.02 1.80 16
45 H 0.12 2.82 7.44 -2.39 -0.02 2.80 16
46 H 0.39 14.98 5.76 -92.70 -0.53 14.45 16
47 H 0.28 15.41 8.31 -92.71 -0.77 14.64 16
48 H 0.06 1.37 8.14 -2.39 -0.02 1.35 16
49 H 0.07 1.78 5.88 -2.39 -0.01 1.76 16
50 H 0.07 1.11 8.04 -2.39 -0.02 1.09 16
51 H 0.14 1.37 8.06 -2.91 -0.02 1.35 16
Total: -1.00 -82.36 407.04 1.39 -80.97
By element:
Atomic # 1 Polarization: 43.85 SS G_CDS: -0.73 Total: 43.12 kcal
Atomic # 6 Polarization: 1.78 SS G_CDS: 6.32 Total: 8.10 kcal
Atomic # 7 Polarization: -115.46 SS G_CDS: -6.00 Total: -121.47 kcal
Atomic # 8 Polarization: -51.09 SS G_CDS: -0.10 Total: -51.19 kcal
Atomic # 14 Polarization: 38.56 SS G_CDS: 1.90 Total: 40.47 kcal
Total: -82.36 1.39 -80.97 kcal
The number of atoms in the molecule is 51
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001674767682.mol2 51
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 10.184 kcal
(2) G-P(sol) polarization free energy of solvation -82.356 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.172 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.388 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.968 kcal
(6) G-S(sol) free energy of system = (1) + (5) -70.784 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.43 seconds