Wall clock time and date at job start Wed Apr 1 2020 05:03:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.37986 * 120.07384 * 2 1 4 4 C 1.38334 * 120.14297 * 180.29740 * 3 2 1 5 5 C 1.38378 * 120.29372 * 359.68296 * 4 3 2 6 6 C 1.37933 * 120.14769 * 359.97438 * 5 4 3 7 7 C 1.39553 * 120.07586 * 179.68129 * 2 1 3 8 8 C 1.47850 * 120.14280 * 359.97438 * 7 2 1 9 9 O 1.21549 * 119.99826 * 353.48223 * 8 7 2 10 10 N 1.34781 * 119.99917 * 173.75930 * 8 7 2 11 11 C 1.46501 * 119.99757 * 179.72586 * 10 8 7 12 12 H 1.08995 * 109.47048 * 324.99273 * 11 10 8 13 13 C 1.52995 * 109.47188 * 84.99833 * 11 10 8 14 14 C 1.52995 * 109.46730 * 204.99731 * 11 10 8 15 15 C 1.53007 * 109.47214 * 64.99750 * 14 11 10 16 16 C 1.52996 * 109.46973 * 179.97438 * 15 14 11 17 17 N 1.46901 * 109.46806 * 180.02562 * 16 15 14 18 18 C 1.46911 * 111.00024 * 180.02562 * 17 16 15 19 19 C 1.50700 * 109.47042 * 179.97438 * 18 17 16 20 20 O 1.21287 * 119.99988 * 0.02562 * 19 18 17 21 21 N 1.34775 * 119.99684 * 179.97438 * 19 18 17 22 22 C 1.37098 * 119.99986 * 180.02562 * 21 19 18 23 23 H 1.08007 * 119.99647 * 0.02562 * 22 21 19 24 24 C 1.38949 * 120.00481 * 180.02562 * 22 21 19 25 25 N 1.31407 * 120.00474 * 180.02562 * 24 22 21 26 26 Si 1.86807 * 119.99653 * 0.02562 * 24 22 21 27 27 H 1.48503 * 109.47094 * 89.99784 * 26 24 22 28 28 H 1.48498 * 109.47080 * 209.99979 * 26 24 22 29 29 H 1.48504 * 109.47040 * 330.00074 * 26 24 22 30 30 H 1.09000 * 109.47124 * 263.72877 * 1 2 3 31 31 H 1.09000 * 109.47284 * 23.72860 * 1 2 3 32 32 H 1.09002 * 109.47238 * 143.72955 * 1 2 3 33 33 H 1.08000 * 119.92309 * 0.02562 * 3 2 1 34 34 H 1.08004 * 119.85322 * 179.70169 * 4 3 2 35 35 H 1.07999 * 119.92670 * 180.02562 * 5 4 3 36 36 H 1.08003 * 120.07879 * 180.02562 * 6 5 4 37 37 H 0.96999 * 119.99832 * 359.72267 * 10 8 7 38 38 H 1.08999 * 109.47152 * 179.97438 * 13 11 10 39 39 H 1.09001 * 109.47283 * 300.00107 * 13 11 10 40 40 H 1.09003 * 109.47280 * 59.99782 * 13 11 10 41 41 H 1.08999 * 109.47416 * 184.99717 * 14 11 10 42 42 H 1.09003 * 109.47611 * 305.00373 * 14 11 10 43 43 H 1.08990 * 109.47376 * 299.99999 * 15 14 11 44 44 H 1.09008 * 109.46735 * 60.00043 * 15 14 11 45 45 H 1.08999 * 109.47944 * 300.00142 * 16 15 14 46 46 H 1.09003 * 109.47325 * 60.00947 * 16 15 14 47 47 H 1.00896 * 111.00184 * 303.95318 * 17 16 15 48 48 H 1.08998 * 109.47087 * 300.00453 * 18 17 16 49 49 H 1.08999 * 109.46673 * 59.99952 * 18 17 16 50 50 H 0.97000 * 119.99934 * 0.02562 * 21 19 18 51 51 H 0.96998 * 119.99888 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1984 1.1941 0.0000 4 6 3.5818 1.1958 -0.0062 5 6 4.2812 0.0018 -0.0058 6 6 3.6023 -1.1988 0.0013 7 6 2.2063 -1.2076 0.0067 8 6 1.4720 -2.4908 0.0144 9 8 0.2624 -2.4981 0.1344 10 7 2.1443 -3.6528 -0.1060 11 6 1.4172 -4.9245 -0.0923 12 1 0.5692 -4.8509 0.5885 13 6 0.9136 -5.2392 -1.5023 14 6 2.3520 -6.0413 0.3764 15 6 2.7569 -5.7908 1.8305 16 6 3.6912 -6.9079 2.2995 17 7 4.0794 -6.6677 3.6957 18 6 4.9792 -7.7227 4.1810 19 6 5.3555 -7.4425 5.6131 20 8 4.9170 -6.4609 6.1744 21 7 6.1786 -8.2834 6.2703 22 6 6.5206 -8.0288 7.5733 23 1 6.1300 -7.1547 8.0732 24 6 7.3696 -8.8953 8.2509 25 7 7.6970 -8.6516 9.5000 26 14 8.0456 -10.4068 7.3860 27 1 9.3293 -10.0647 6.7224 28 1 8.2746 -11.4853 8.3808 29 1 7.0703 -10.8719 6.3673 30 1 -0.3633 -0.1123 1.0215 31 1 -0.3634 0.9408 -0.4135 32 1 -0.3634 -0.8285 -0.6080 33 1 1.6584 2.1294 0.0004 34 1 4.1182 2.1332 -0.0111 35 1 5.3612 0.0100 -0.0103 36 1 4.1493 -2.1300 0.0019 37 1 3.1095 -3.6469 -0.2018 38 1 0.3730 -6.1857 -1.4922 39 1 0.2476 -4.4436 -1.8363 40 1 1.7617 -5.3129 -2.1831 41 1 1.8386 -7.0000 0.3023 42 1 3.2430 -6.0568 -0.2512 43 1 3.2703 -4.8322 1.9048 44 1 1.8658 -5.7753 2.4583 45 1 3.1775 -7.8664 2.2254 46 1 4.5823 -6.9237 1.6719 47 1 4.5001 -5.7568 3.8025 48 1 4.4749 -8.6871 4.1194 49 1 5.8793 -7.7435 3.5665 50 1 6.5290 -9.0686 5.8215 51 1 8.2899 -9.2563 9.9728 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001675848488.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:03:03 Heat of formation + Delta-G solvation = -55.558239 kcal Electronic energy + Delta-G solvation = -29166.630929 eV Core-core repulsion = 25065.374963 eV Total energy + Delta-G solvation = -4101.255966 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -40.76208 -38.89752 -38.49012 -37.12247 -35.62629 -33.95645 -33.25357 -32.69007 -31.72632 -31.49240 -30.21814 -27.49254 -27.30590 -25.21408 -24.24763 -23.33649 -22.30196 -21.54490 -21.02368 -20.78418 -19.36408 -18.32065 -18.12184 -16.84209 -16.21325 -15.98950 -15.83748 -15.49941 -15.42586 -15.17805 -14.95127 -14.53483 -14.43334 -14.04408 -13.91863 -13.73222 -13.49683 -13.38202 -13.22862 -13.08649 -12.72476 -12.62840 -12.37135 -12.28317 -12.16804 -12.07114 -11.98400 -11.89807 -11.54856 -11.46660 -11.37583 -11.17537 -10.93468 -10.83238 -10.59917 -9.97621 -9.85318 -9.57514 -9.48695 -9.30125 -9.03747 -8.58961 -8.19706 -8.12943 -6.31077 -3.82525 0.50619 0.96694 2.58815 2.83878 3.02277 3.05922 3.14434 3.48663 3.74221 4.00271 4.10049 4.31929 4.36980 4.48120 4.53095 4.64475 4.70348 4.74898 4.89608 4.93346 5.04482 5.07474 5.19008 5.22390 5.26805 5.28494 5.35337 5.44481 5.46851 5.50193 5.53265 5.57056 5.61471 5.63317 5.72910 5.81837 5.86364 5.89328 5.93263 5.94714 6.02317 6.04960 6.15667 6.21365 6.28935 6.51262 7.11111 7.19788 7.57498 7.59181 7.94064 8.14650 8.59952 8.95069 9.42445 9.82972 10.82074 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.013221 B = 0.001750 C = 0.001618 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2117.289113 B =15994.937931 C =17296.187992 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.023 4.023 3 C -0.133 4.133 4 C -0.090 4.090 5 C -0.135 4.135 6 C -0.081 4.081 7 C -0.142 4.142 8 C 0.560 3.440 9 O -0.531 6.531 10 N -0.720 5.720 11 C 0.142 3.858 12 H 0.092 0.908 13 C -0.163 4.163 14 C -0.125 4.125 15 C -0.118 4.118 16 C 0.060 3.940 17 N -0.670 5.670 18 C 0.048 3.952 19 C 0.449 3.551 20 O -0.564 6.564 21 N -0.591 5.591 22 C -0.305 4.305 23 H 0.119 0.881 24 C 0.041 3.959 25 N -0.881 5.881 26 Si 0.880 3.120 27 H -0.271 1.271 28 H -0.276 1.276 29 H -0.269 1.269 30 H 0.076 0.924 31 H 0.056 0.944 32 H 0.094 0.906 33 H 0.128 0.872 34 H 0.127 0.873 35 H 0.129 0.871 36 H 0.125 0.875 37 H 0.398 0.602 38 H 0.067 0.933 39 H 0.060 0.940 40 H 0.055 0.945 41 H 0.082 0.918 42 H 0.067 0.933 43 H 0.061 0.939 44 H 0.075 0.925 45 H 0.070 0.930 46 H 0.024 0.976 47 H 0.350 0.650 48 H 0.087 0.913 49 H 0.043 0.957 50 H 0.370 0.630 51 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.848 12.346 -28.173 32.006 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.024 4.024 3 C -0.151 4.151 4 C -0.108 4.108 5 C -0.153 4.153 6 C -0.100 4.100 7 C -0.145 4.145 8 C 0.348 3.652 9 O -0.409 6.409 10 N -0.372 5.372 11 C 0.038 3.962 12 H 0.110 0.890 13 C -0.221 4.221 14 C -0.164 4.164 15 C -0.156 4.156 16 C -0.070 4.070 17 N -0.303 5.303 18 C -0.084 4.084 19 C 0.235 3.765 20 O -0.446 6.446 21 N -0.231 5.231 22 C -0.434 4.434 23 H 0.137 0.863 24 C -0.162 4.162 25 N -0.521 5.521 26 Si 0.707 3.293 27 H -0.197 1.197 28 H -0.202 1.202 29 H -0.195 1.195 30 H 0.095 0.905 31 H 0.075 0.925 32 H 0.113 0.887 33 H 0.146 0.854 34 H 0.145 0.855 35 H 0.147 0.853 36 H 0.143 0.857 37 H 0.233 0.767 38 H 0.085 0.915 39 H 0.079 0.921 40 H 0.074 0.926 41 H 0.100 0.900 42 H 0.085 0.915 43 H 0.080 0.920 44 H 0.094 0.906 45 H 0.089 0.911 46 H 0.043 0.957 47 H 0.169 0.831 48 H 0.105 0.895 49 H 0.061 0.939 50 H 0.203 0.797 51 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -10.467 12.615 -27.229 31.782 hybrid contribution 2.194 -1.103 -0.953 2.634 sum -8.272 11.511 -28.181 31.546 Atomic orbital electron populations 1.21088 0.89972 1.02916 1.03794 1.20084 0.96942 0.91513 0.93827 1.21096 0.94313 0.97572 1.02108 1.21377 0.94289 0.98408 0.96714 1.21105 1.00341 0.92193 1.01656 1.21297 0.92909 0.98643 0.97114 1.19803 0.93604 0.93250 1.07818 1.18258 0.87118 0.83700 0.76132 1.90727 1.13719 1.87112 1.49312 1.46034 1.10856 1.05678 1.74643 1.21020 0.95474 0.82159 0.97556 0.88988 1.22176 1.01407 1.02168 0.96364 1.21879 0.99444 0.98376 0.96678 1.21563 1.00572 0.98447 0.94991 1.21980 0.97379 0.99185 0.88452 1.60054 1.46018 1.05735 1.18459 1.21703 0.95133 0.96502 0.95111 1.19733 0.83182 0.85703 0.87886 1.90567 1.55913 1.29308 1.68798 1.42210 1.43900 1.23667 1.13286 1.19438 1.26550 1.11437 0.85940 0.86290 1.25045 0.97323 0.98187 0.95673 1.69620 1.35256 1.37858 1.09407 0.86664 0.79747 0.83176 0.79748 1.19680 1.20156 1.19484 0.90508 0.92492 0.88718 0.85373 0.85537 0.85349 0.85685 0.76658 0.91451 0.92104 0.92553 0.89970 0.91455 0.91994 0.90625 0.91127 0.95736 0.83108 0.89520 0.93876 0.79703 0.91619 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.11 8.72 36.00 0.31 -0.79 16 2 C -0.02 -0.21 5.91 -104.23 -0.62 -0.83 16 3 C -0.13 -1.01 9.66 -39.64 -0.38 -1.40 16 4 C -0.09 -0.61 10.04 -39.49 -0.40 -1.01 16 5 C -0.13 -0.93 10.03 -39.64 -0.40 -1.33 16 6 C -0.08 -0.61 9.53 -39.19 -0.37 -0.99 16 7 C -0.14 -1.35 5.87 -104.97 -0.62 -1.97 16 8 C 0.56 5.86 7.67 -12.32 -0.09 5.76 16 9 O -0.53 -6.96 13.02 5.32 0.07 -6.90 16 10 N -0.72 -5.73 4.48 -54.75 -0.25 -5.97 16 11 C 0.14 1.11 2.57 -67.93 -0.17 0.94 16 12 H 0.09 0.91 7.58 -51.93 -0.39 0.52 16 13 C -0.16 -1.14 9.48 37.16 0.35 -0.79 16 14 C -0.13 -0.85 4.75 -26.73 -0.13 -0.98 16 15 C -0.12 -1.11 5.36 -26.73 -0.14 -1.25 16 16 C 0.06 0.65 5.69 -3.83 -0.02 0.63 16 17 N -0.67 -10.37 6.13 -115.05 -0.70 -11.08 16 18 C 0.05 0.80 6.17 -4.97 -0.03 0.77 16 19 C 0.45 10.31 7.82 -10.99 -0.09 10.22 16 20 O -0.56 -15.38 15.78 5.55 0.09 -15.30 16 21 N -0.59 -14.18 5.09 -10.96 -0.06 -14.24 16 22 C -0.30 -8.69 10.16 -14.93 -0.15 -8.85 16 23 H 0.12 3.88 7.39 -52.48 -0.39 3.49 16 24 C 0.04 1.12 5.50 -17.47 -0.10 1.02 16 25 N -0.88 -25.86 13.96 55.50 0.77 -25.08 16 26 Si 0.88 19.36 27.74 -169.99 -4.71 14.65 16 27 H -0.27 -5.82 7.11 56.52 0.40 -5.42 16 28 H -0.28 -6.10 7.11 56.52 0.40 -5.70 16 29 H -0.27 -5.40 6.52 56.52 0.37 -5.03 16 30 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 31 H 0.06 0.40 8.04 -51.93 -0.42 -0.02 16 32 H 0.09 1.01 5.87 -51.93 -0.30 0.70 16 33 H 0.13 0.72 8.06 -52.49 -0.42 0.30 16 34 H 0.13 0.57 8.06 -52.48 -0.42 0.15 16 35 H 0.13 0.63 8.06 -52.49 -0.42 0.21 16 36 H 0.13 0.67 6.45 -52.48 -0.34 0.33 16 37 H 0.40 2.35 6.68 -40.82 -0.27 2.08 16 38 H 0.07 0.41 8.14 -51.93 -0.42 -0.02 16 39 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 40 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 41 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 42 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 43 H 0.06 0.59 7.75 -51.93 -0.40 0.19 16 44 H 0.08 0.85 8.14 -51.92 -0.42 0.43 16 45 H 0.07 0.75 8.14 -51.93 -0.42 0.32 16 46 H 0.02 0.24 8.14 -51.93 -0.42 -0.18 16 47 H 0.35 5.61 8.43 -39.29 -0.33 5.28 16 48 H 0.09 1.30 8.14 -51.93 -0.42 0.88 16 49 H 0.04 0.62 8.14 -51.93 -0.42 0.19 16 50 H 0.37 7.76 5.76 -40.82 -0.24 7.52 16 51 H 0.27 7.39 8.31 -40.82 -0.34 7.05 16 LS Contribution 417.85 15.07 6.30 6.30 Total: -1.00 -35.06 417.85 -9.71 -44.77 By element: Atomic # 1 Polarization: 21.83 SS G_CDS: -8.17 Total: 13.66 kcal Atomic # 6 Polarization: 2.22 SS G_CDS: -3.04 Total: -0.82 kcal Atomic # 7 Polarization: -56.13 SS G_CDS: -0.23 Total: -56.37 kcal Atomic # 8 Polarization: -22.35 SS G_CDS: 0.16 Total: -22.19 kcal Atomic # 14 Polarization: 19.36 SS G_CDS: -4.71 Total: 14.65 kcal Total LS contribution 6.30 Total: 6.30 kcal Total: -35.06 -9.71 -44.77 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001675848488.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.790 kcal (2) G-P(sol) polarization free energy of solvation -35.062 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.852 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.706 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.768 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.558 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds