Wall clock time and date at job start Wed Apr 1 2020 05:03:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.37986 * 120.07384 * 2 1 4 4 C 1.38334 * 120.14297 * 180.29740 * 3 2 1 5 5 C 1.38378 * 120.29372 * 359.68296 * 4 3 2 6 6 C 1.37933 * 120.14769 * 359.97438 * 5 4 3 7 7 C 1.39553 * 120.07586 * 179.68129 * 2 1 3 8 8 C 1.47850 * 120.14280 * 359.97438 * 7 2 1 9 9 O 1.21549 * 119.99826 * 353.48223 * 8 7 2 10 10 N 1.34781 * 119.99917 * 173.75930 * 8 7 2 11 11 C 1.46501 * 119.99757 * 179.72586 * 10 8 7 12 12 H 1.08995 * 109.47048 * 324.99273 * 11 10 8 13 13 C 1.52995 * 109.47188 * 84.99833 * 11 10 8 14 14 C 1.52995 * 109.46730 * 204.99731 * 11 10 8 15 15 C 1.53007 * 109.47214 * 64.99750 * 14 11 10 16 16 C 1.52996 * 109.46973 * 179.97438 * 15 14 11 17 17 N 1.46901 * 109.46806 * 180.02562 * 16 15 14 18 18 C 1.46911 * 111.00024 * 180.02562 * 17 16 15 19 19 C 1.50700 * 109.47042 * 179.97438 * 18 17 16 20 20 O 1.21287 * 119.99988 * 0.02562 * 19 18 17 21 21 N 1.34775 * 119.99684 * 179.97438 * 19 18 17 22 22 C 1.37098 * 119.99986 * 180.02562 * 21 19 18 23 23 H 1.08007 * 119.99647 * 0.02562 * 22 21 19 24 24 C 1.38949 * 120.00481 * 180.02562 * 22 21 19 25 25 N 1.31407 * 120.00474 * 180.02562 * 24 22 21 26 26 Si 1.86807 * 119.99653 * 0.02562 * 24 22 21 27 27 H 1.48503 * 109.47094 * 89.99784 * 26 24 22 28 28 H 1.48498 * 109.47080 * 209.99979 * 26 24 22 29 29 H 1.48504 * 109.47040 * 330.00074 * 26 24 22 30 30 H 1.09000 * 109.47124 * 263.72877 * 1 2 3 31 31 H 1.09000 * 109.47284 * 23.72860 * 1 2 3 32 32 H 1.09002 * 109.47238 * 143.72955 * 1 2 3 33 33 H 1.08000 * 119.92309 * 0.02562 * 3 2 1 34 34 H 1.08004 * 119.85322 * 179.70169 * 4 3 2 35 35 H 1.07999 * 119.92670 * 180.02562 * 5 4 3 36 36 H 1.08003 * 120.07879 * 180.02562 * 6 5 4 37 37 H 0.96999 * 119.99832 * 359.72267 * 10 8 7 38 38 H 1.08999 * 109.47152 * 179.97438 * 13 11 10 39 39 H 1.09001 * 109.47283 * 300.00107 * 13 11 10 40 40 H 1.09003 * 109.47280 * 59.99782 * 13 11 10 41 41 H 1.08999 * 109.47416 * 184.99717 * 14 11 10 42 42 H 1.09003 * 109.47611 * 305.00373 * 14 11 10 43 43 H 1.08990 * 109.47376 * 299.99999 * 15 14 11 44 44 H 1.09008 * 109.46735 * 60.00043 * 15 14 11 45 45 H 1.08999 * 109.47944 * 300.00142 * 16 15 14 46 46 H 1.09003 * 109.47325 * 60.00947 * 16 15 14 47 47 H 1.00896 * 111.00184 * 303.95318 * 17 16 15 48 48 H 1.08998 * 109.47087 * 300.00453 * 18 17 16 49 49 H 1.08999 * 109.46673 * 59.99952 * 18 17 16 50 50 H 0.97000 * 119.99934 * 0.02562 * 21 19 18 51 51 H 0.96998 * 119.99888 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1984 1.1941 0.0000 4 6 3.5818 1.1958 -0.0062 5 6 4.2812 0.0018 -0.0058 6 6 3.6023 -1.1988 0.0013 7 6 2.2063 -1.2076 0.0067 8 6 1.4720 -2.4908 0.0144 9 8 0.2624 -2.4981 0.1344 10 7 2.1443 -3.6528 -0.1060 11 6 1.4172 -4.9245 -0.0923 12 1 0.5692 -4.8509 0.5885 13 6 0.9136 -5.2392 -1.5023 14 6 2.3520 -6.0413 0.3764 15 6 2.7569 -5.7908 1.8305 16 6 3.6912 -6.9079 2.2995 17 7 4.0794 -6.6677 3.6957 18 6 4.9792 -7.7227 4.1810 19 6 5.3555 -7.4425 5.6131 20 8 4.9170 -6.4609 6.1744 21 7 6.1786 -8.2834 6.2703 22 6 6.5206 -8.0288 7.5733 23 1 6.1300 -7.1547 8.0732 24 6 7.3696 -8.8953 8.2509 25 7 7.6970 -8.6516 9.5000 26 14 8.0456 -10.4068 7.3860 27 1 9.3293 -10.0647 6.7224 28 1 8.2746 -11.4853 8.3808 29 1 7.0703 -10.8719 6.3673 30 1 -0.3633 -0.1123 1.0215 31 1 -0.3634 0.9408 -0.4135 32 1 -0.3634 -0.8285 -0.6080 33 1 1.6584 2.1294 0.0004 34 1 4.1182 2.1332 -0.0111 35 1 5.3612 0.0100 -0.0103 36 1 4.1493 -2.1300 0.0019 37 1 3.1095 -3.6469 -0.2018 38 1 0.3730 -6.1857 -1.4922 39 1 0.2476 -4.4436 -1.8363 40 1 1.7617 -5.3129 -2.1831 41 1 1.8386 -7.0000 0.3023 42 1 3.2430 -6.0568 -0.2512 43 1 3.2703 -4.8322 1.9048 44 1 1.8658 -5.7753 2.4583 45 1 3.1775 -7.8664 2.2254 46 1 4.5823 -6.9237 1.6719 47 1 4.5001 -5.7568 3.8025 48 1 4.4749 -8.6871 4.1194 49 1 5.8793 -7.7435 3.5665 50 1 6.5290 -9.0686 5.8215 51 1 8.2899 -9.2563 9.9728 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001675848488.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:03:02 Heat of formation + Delta-G solvation = -81.106524 kcal Electronic energy + Delta-G solvation = -29167.738786 eV Core-core repulsion = 25065.374963 eV Total energy + Delta-G solvation = -4102.363823 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.45637 -40.31373 -39.50126 -37.98044 -36.70451 -35.90799 -34.01487 -33.74507 -33.37168 -32.32081 -30.90249 -28.77256 -27.96198 -26.60253 -25.10007 -24.52303 -22.96180 -22.35088 -21.65864 -21.49771 -21.26538 -20.24167 -18.76385 -17.82862 -17.49831 -17.10992 -16.71249 -16.60010 -16.25221 -16.11647 -15.90662 -15.72203 -15.51662 -15.27706 -14.92614 -14.66928 -14.50449 -14.33431 -14.28451 -14.06785 -14.03075 -13.82658 -13.33314 -13.22826 -13.03134 -12.98772 -12.84802 -12.76305 -12.64476 -12.41962 -12.38761 -12.11553 -12.02090 -11.97291 -11.67434 -11.56482 -11.51407 -10.63432 -10.45032 -10.25794 -10.19301 -9.88840 -9.65216 -9.29186 -8.41679 -6.03051 -0.11750 0.39076 1.30533 1.35835 1.45294 1.88467 1.94975 2.18041 2.23202 2.73248 2.86384 3.14640 3.39081 3.68660 3.79819 3.87917 3.90471 4.06128 4.09950 4.15215 4.18622 4.34347 4.39853 4.43948 4.46339 4.49551 4.57580 4.65234 4.71610 4.71909 4.79200 4.81914 4.84353 4.88477 4.92697 4.98147 5.10308 5.22903 5.26681 5.31890 5.35257 5.41919 5.50132 5.52758 5.57556 5.62204 5.90983 5.95972 6.09445 6.41168 6.54027 6.59445 6.87435 7.22577 7.39019 7.96030 8.76031 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.013221 B = 0.001750 C = 0.001618 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2117.289113 B =15994.937931 C =17296.187992 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.047 4.047 3 C -0.139 4.139 4 C -0.090 4.090 5 C -0.139 4.139 6 C -0.084 4.084 7 C -0.164 4.164 8 C 0.552 3.448 9 O -0.568 6.568 10 N -0.709 5.709 11 C 0.141 3.859 12 H 0.064 0.936 13 C -0.156 4.156 14 C -0.112 4.112 15 C -0.113 4.113 16 C 0.063 3.937 17 N -0.695 5.695 18 C 0.063 3.937 19 C 0.446 3.554 20 O -0.617 6.617 21 N -0.590 5.590 22 C -0.330 4.330 23 H 0.053 0.947 24 C -0.017 4.017 25 N -0.935 5.935 26 Si 0.968 3.032 27 H -0.255 1.255 28 H -0.276 1.276 29 H -0.231 1.231 30 H 0.061 0.939 31 H 0.075 0.925 32 H 0.074 0.926 33 H 0.145 0.855 34 H 0.153 0.847 35 H 0.152 0.848 36 H 0.146 0.854 37 H 0.410 0.590 38 H 0.079 0.921 39 H 0.038 0.962 40 H 0.071 0.929 41 H 0.095 0.905 42 H 0.091 0.909 43 H 0.057 0.943 44 H 0.049 0.951 45 H 0.080 0.920 46 H 0.050 0.950 47 H 0.342 0.658 48 H 0.113 0.887 49 H 0.080 0.920 50 H 0.390 0.610 51 H 0.279 0.721 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.764 10.343 -31.709 34.032 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.048 4.048 3 C -0.157 4.157 4 C -0.108 4.108 5 C -0.157 4.157 6 C -0.103 4.103 7 C -0.167 4.167 8 C 0.341 3.659 9 O -0.449 6.449 10 N -0.361 5.361 11 C 0.037 3.963 12 H 0.082 0.918 13 C -0.214 4.214 14 C -0.150 4.150 15 C -0.151 4.151 16 C -0.065 4.065 17 N -0.328 5.328 18 C -0.069 4.069 19 C 0.234 3.766 20 O -0.502 6.502 21 N -0.232 5.232 22 C -0.460 4.460 23 H 0.071 0.929 24 C -0.216 4.216 25 N -0.575 5.575 26 Si 0.787 3.213 27 H -0.179 1.179 28 H -0.201 1.201 29 H -0.154 1.154 30 H 0.080 0.920 31 H 0.094 0.906 32 H 0.093 0.907 33 H 0.163 0.837 34 H 0.170 0.830 35 H 0.170 0.830 36 H 0.163 0.837 37 H 0.247 0.753 38 H 0.098 0.902 39 H 0.057 0.943 40 H 0.090 0.910 41 H 0.113 0.887 42 H 0.110 0.890 43 H 0.076 0.924 44 H 0.068 0.932 45 H 0.099 0.901 46 H 0.068 0.932 47 H 0.160 0.840 48 H 0.131 0.869 49 H 0.098 0.902 50 H 0.226 0.774 51 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -8.374 10.593 -30.808 33.637 hybrid contribution 1.503 -0.324 0.209 1.552 sum -6.870 10.269 -30.599 33.000 Atomic orbital electron populations 1.20969 0.90559 1.03036 1.02587 1.20268 0.96932 0.92457 0.95129 1.21345 0.95056 0.97556 1.01719 1.21753 0.94032 0.99647 0.95361 1.21477 1.01634 0.91882 1.00673 1.21562 0.92111 1.00099 0.96503 1.19904 0.94636 0.92780 1.09348 1.18572 0.86855 0.84724 0.75718 1.90706 1.15309 1.87694 1.51231 1.45968 1.11411 1.05148 1.73563 1.21017 0.95090 0.82497 0.97671 0.91804 1.22110 1.01644 1.01923 0.95750 1.21790 1.00105 0.98151 0.94934 1.21497 0.99204 0.98095 0.96289 1.22066 0.98461 0.99851 0.86168 1.60066 1.45927 1.05123 1.21679 1.21627 0.97221 0.97752 0.90306 1.21089 0.81145 0.84118 0.90288 1.90545 1.57352 1.31496 1.70775 1.42029 1.44570 1.24841 1.11742 1.19007 1.28157 1.10501 0.88309 0.92879 1.26168 0.96776 1.02300 0.96319 1.69809 1.36100 1.39836 1.11770 0.85330 0.79947 0.76881 0.79125 1.17942 1.20066 1.15379 0.91991 0.90622 0.90703 0.83682 0.82954 0.82983 0.83651 0.75260 0.90219 0.94306 0.90971 0.88686 0.89032 0.92387 0.93239 0.90145 0.93228 0.83955 0.86940 0.90225 0.77381 0.91120 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.29 8.72 71.23 0.62 -1.66 16 2 C -0.05 -0.91 5.91 -19.61 -0.12 -1.02 16 3 C -0.14 -2.01 9.66 22.23 0.21 -1.80 16 4 C -0.09 -1.05 10.04 22.33 0.22 -0.82 16 5 C -0.14 -1.63 10.03 22.23 0.22 -1.40 16 6 C -0.08 -1.18 9.53 22.53 0.21 -0.96 16 7 C -0.16 -3.17 5.87 -20.09 -0.12 -3.29 16 8 C 0.55 12.13 7.67 86.79 0.67 12.79 16 9 O -0.57 -16.25 13.02 -3.87 -0.05 -16.30 16 10 N -0.71 -10.97 4.48 -445.42 -2.00 -12.97 16 11 C 0.14 2.13 2.57 44.99 0.12 2.24 16 12 H 0.06 1.34 7.58 -2.39 -0.02 1.32 16 13 C -0.16 -2.01 9.48 71.98 0.68 -1.33 16 14 C -0.11 -1.22 4.75 30.59 0.15 -1.07 16 15 C -0.11 -1.93 5.36 30.60 0.16 -1.77 16 16 C 0.06 1.16 5.69 86.30 0.49 1.65 16 17 N -0.70 -20.15 6.13 -517.91 -3.17 -23.32 16 18 C 0.06 1.89 6.17 85.55 0.53 2.42 16 19 C 0.45 20.26 7.82 87.66 0.69 20.94 16 20 O -0.62 -34.89 15.78 -3.05 -0.05 -34.94 16 21 N -0.59 -27.87 5.09 -306.99 -1.56 -29.43 16 22 C -0.33 -19.52 10.16 84.04 0.85 -18.66 16 23 H 0.05 3.75 7.39 -2.91 -0.02 3.73 16 24 C -0.02 -0.95 5.50 84.93 0.47 -0.49 16 25 N -0.93 -56.58 13.96 21.66 0.30 -56.28 16 26 Si 0.97 38.46 27.74 68.60 1.90 40.37 16 27 H -0.26 -9.51 7.11 99.48 0.71 -8.80 16 28 H -0.28 -10.91 7.11 99.48 0.71 -10.21 16 29 H -0.23 -7.66 6.52 99.48 0.65 -7.02 16 30 H 0.06 1.36 8.14 -2.39 -0.02 1.34 16 31 H 0.07 1.12 8.04 -2.39 -0.02 1.10 16 32 H 0.07 1.78 5.87 -2.39 -0.01 1.77 16 33 H 0.15 1.47 8.06 -2.91 -0.02 1.45 16 34 H 0.15 0.92 8.06 -2.91 -0.02 0.90 16 35 H 0.15 1.02 8.06 -2.91 -0.02 0.99 16 36 H 0.15 1.26 6.45 -2.91 -0.02 1.24 16 37 H 0.41 4.16 6.68 -92.71 -0.62 3.54 16 38 H 0.08 0.83 8.14 -2.39 -0.02 0.81 16 39 H 0.04 0.68 8.14 -2.39 -0.02 0.66 16 40 H 0.07 0.71 8.14 -2.39 -0.02 0.69 16 41 H 0.09 0.86 8.14 -2.39 -0.02 0.84 16 42 H 0.09 0.63 8.14 -2.39 -0.02 0.61 16 43 H 0.06 1.03 7.75 -2.39 -0.02 1.01 16 44 H 0.05 1.11 8.14 -2.38 -0.02 1.09 16 45 H 0.08 1.36 8.14 -2.39 -0.02 1.34 16 46 H 0.05 0.71 8.14 -2.39 -0.02 0.69 16 47 H 0.34 10.68 8.43 -89.70 -0.76 9.92 16 48 H 0.11 2.85 8.14 -2.39 -0.02 2.83 16 49 H 0.08 1.86 8.14 -2.39 -0.02 1.84 16 50 H 0.39 15.07 5.76 -92.71 -0.53 14.53 16 51 H 0.28 15.41 8.31 -92.71 -0.77 14.64 16 Total: -1.00 -84.68 417.85 0.43 -84.25 By element: Atomic # 1 Polarization: 43.87 SS G_CDS: -1.01 Total: 42.86 kcal Atomic # 6 Polarization: -0.30 SS G_CDS: 6.06 Total: 5.76 kcal Atomic # 7 Polarization: -115.57 SS G_CDS: -6.43 Total: -122.00 kcal Atomic # 8 Polarization: -51.14 SS G_CDS: -0.10 Total: -51.24 kcal Atomic # 14 Polarization: 38.46 SS G_CDS: 1.90 Total: 40.37 kcal Total: -84.68 0.43 -84.25 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001675848488.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.143 kcal (2) G-P(sol) polarization free energy of solvation -84.676 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.533 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.426 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.250 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.107 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds