Wall clock time and date at job start Wed Apr 1 2020 05:49:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38356 * 119.46370 * 2 1 4 4 C 1.38353 * 119.30187 * 180.02562 * 3 2 1 5 5 C 1.40022 * 118.29004 * 0.02562 * 4 3 2 6 6 C 1.47840 * 120.55682 * 179.97438 * 5 4 3 7 7 O 1.21557 * 119.99838 * 131.59946 * 6 5 4 8 8 N 1.34769 * 120.00544 * 311.59724 * 6 5 4 9 9 C 1.46503 * 119.99984 * 4.82990 * 8 6 5 10 10 C 1.46500 * 120.00686 * 184.82749 * 8 6 5 11 11 C 1.53001 * 109.47154 * 89.99803 * 10 8 6 12 12 O 1.42907 * 109.46875 * 65.00432 * 11 10 8 13 13 C 1.42895 * 114.00009 * 179.97438 * 12 11 10 14 14 C 1.53005 * 109.47134 * 179.97438 * 13 12 11 15 15 N 1.46498 * 109.46675 * 65.00412 * 14 13 12 16 16 C 1.36944 * 119.99893 * 180.02562 * 15 14 13 17 17 H 1.07996 * 119.99520 * 359.97438 * 16 15 14 18 18 C 1.38810 * 120.00204 * 179.97438 * 16 15 14 19 19 N 1.31620 * 119.99791 * 359.97438 * 18 16 15 20 20 Si 1.86797 * 119.99942 * 179.97438 * 18 16 15 21 21 H 1.48503 * 109.47040 * 89.99843 * 20 18 16 22 22 H 1.48503 * 109.47115 * 209.99647 * 20 18 16 23 23 H 1.48498 * 109.47173 * 329.99651 * 20 18 16 24 24 C 1.39520 * 118.88457 * 0.02562 * 5 4 3 25 25 C 1.50693 * 119.71897 * 179.72303 * 24 5 4 26 26 C 1.53004 * 117.50134 * 183.13696 * 25 24 5 27 27 C 1.52999 * 60.00187 * 252.51307 * 26 25 24 28 28 N 1.31696 * 120.56287 * 359.97438 * 24 5 4 29 29 H 1.08999 * 109.47240 * 89.99782 * 1 2 3 30 30 H 1.08997 * 109.47619 * 210.00030 * 1 2 3 31 31 H 1.09008 * 109.46894 * 330.00208 * 1 2 3 32 32 H 1.07997 * 120.34676 * 0.02562 * 3 2 1 33 33 H 1.07997 * 120.85119 * 179.97438 * 4 3 2 34 34 H 1.09004 * 109.47076 * 85.11265 * 9 8 6 35 35 H 1.08999 * 109.47824 * 205.11501 * 9 8 6 36 36 H 1.09000 * 109.47201 * 325.11898 * 9 8 6 37 37 H 1.08993 * 109.47716 * 210.00717 * 10 8 6 38 38 H 1.09006 * 109.46751 * 330.00469 * 10 8 6 39 39 H 1.08994 * 109.47334 * 185.00324 * 11 10 8 40 40 H 1.09000 * 109.47226 * 305.01143 * 11 10 8 41 41 H 1.08993 * 109.47344 * 300.00284 * 13 12 11 42 42 H 1.09003 * 109.46904 * 60.00145 * 13 12 11 43 43 H 1.08994 * 109.46930 * 185.00057 * 14 13 12 44 44 H 1.08996 * 109.47008 * 305.00284 * 14 13 12 45 45 H 0.97004 * 120.00541 * 359.97438 * 15 14 13 46 46 H 0.96999 * 119.99981 * 180.02562 * 19 18 16 47 47 H 1.09000 * 115.55034 * 328.85308 * 25 24 5 48 48 H 1.09007 * 117.49471 * 0.02562 * 26 25 24 49 49 H 1.08995 * 117.49489 * 145.02039 * 26 25 24 50 50 H 1.09006 * 117.49920 * 252.51008 * 27 26 25 51 51 H 1.08994 * 117.51964 * 107.47956 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1875 1.2046 0.0000 4 6 3.5711 1.2007 -0.0005 5 6 4.2312 -0.0341 -0.0016 6 6 5.7083 -0.0968 -0.0028 7 8 6.2865 -0.8212 0.7837 8 7 6.4138 0.6492 -0.8758 9 6 5.7242 1.6004 -1.7511 10 6 7.8702 0.5090 -0.9496 11 6 8.2275 -0.5686 -1.9752 12 8 7.8226 -0.1401 -3.2770 13 6 8.1126 -1.0791 -4.3144 14 6 7.6377 -0.5190 -5.6567 15 7 8.4148 0.6776 -5.9888 16 6 8.1649 1.3553 -7.1523 17 1 7.3952 1.0072 -7.8251 18 6 8.9009 2.4894 -7.4668 19 7 9.8386 2.9138 -6.6465 20 14 8.5604 3.4132 -9.0542 21 1 7.5288 4.4532 -8.8102 22 1 9.8108 4.0583 -9.5295 23 1 8.0710 2.4628 -10.0849 24 6 3.4716 -1.2044 -0.0027 25 6 4.1626 -2.5436 -0.0101 26 6 3.2820 -3.7926 -0.0852 27 6 3.9910 -3.4340 1.2223 28 7 2.1558 -1.1487 -0.0021 29 1 -0.3634 0.0000 -1.0276 30 1 -0.3634 -0.8899 0.5138 31 1 -0.3633 0.8901 0.5138 32 1 1.6445 2.1381 0.0004 33 1 4.1275 2.1263 -0.0010 34 1 5.5828 2.5434 -1.2230 35 1 6.3232 1.7712 -2.6456 36 1 4.7536 1.1943 -2.0358 37 1 8.3118 1.4587 -1.2514 38 1 8.2576 0.2226 0.0282 39 1 9.3046 -0.7357 -1.9665 40 1 7.7138 -1.4959 -1.7219 41 1 9.1873 -1.2564 -4.3540 42 1 7.5968 -2.0173 -4.1097 43 1 7.7776 -1.2703 -6.4338 44 1 6.5814 -0.2590 -5.5886 45 1 9.1060 0.9905 -5.3843 46 1 10.3527 3.7065 -6.8661 47 1 5.1240 -2.5736 -0.5228 48 1 2.2028 -3.6455 -0.1296 49 1 3.6640 -4.6445 -0.6476 50 1 4.8395 -4.0501 1.5201 51 1 3.3787 -3.0509 2.0386 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001677502188.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:49:36 Heat of formation + Delta-G solvation = -22.984382 kcal Electronic energy + Delta-G solvation = -30885.416779 eV Core-core repulsion = 26785.573321 eV Total energy + Delta-G solvation = -4099.843458 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -42.04380 -40.42193 -39.02183 -38.01351 -36.82239 -36.16609 -34.29930 -33.37025 -33.04021 -31.24335 -29.41675 -29.03238 -27.47470 -25.88846 -25.50716 -24.36431 -23.51132 -23.04488 -22.79914 -21.84382 -20.72332 -19.24410 -18.52105 -18.05675 -17.56470 -17.30445 -17.13336 -17.04586 -16.51967 -16.25204 -15.93889 -15.59727 -15.50824 -15.26058 -14.96796 -14.73961 -14.61182 -14.40853 -14.15679 -13.89427 -13.67027 -13.47646 -13.34666 -13.19291 -13.07406 -12.93660 -12.78090 -12.73226 -12.70425 -12.56739 -12.41815 -12.14322 -11.92897 -11.71387 -11.66299 -11.45367 -11.23114 -10.96183 -10.78959 -10.56840 -10.42875 -9.82051 -9.67819 -8.97918 -7.92369 -5.21083 -0.29913 0.14878 1.48393 1.50146 1.51292 1.58610 1.91475 2.51124 2.57541 2.74866 2.96923 3.07793 3.32323 3.41293 3.57118 3.69607 3.88913 3.94189 4.02380 4.07322 4.09123 4.10912 4.17366 4.23833 4.28906 4.32993 4.44009 4.45935 4.51161 4.54635 4.57895 4.63726 4.71425 4.72170 4.79379 4.80134 4.92108 4.93008 4.96833 5.00751 5.03523 5.11628 5.14602 5.18044 5.26039 5.39647 5.49797 5.62575 6.19396 6.28448 6.34018 6.88440 6.97657 7.35835 8.10927 8.36194 9.31096 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.011943 B = 0.002521 C = 0.002360 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2343.908257 B =11103.568725 C =11862.961538 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.103 4.103 2 C 0.139 3.861 3 C -0.177 4.177 4 C -0.039 4.039 5 C -0.201 4.201 6 C 0.565 3.435 7 O -0.561 6.561 8 N -0.597 5.597 9 C 0.081 3.919 10 C 0.119 3.881 11 C 0.047 3.953 12 O -0.390 6.390 13 C 0.067 3.933 14 C 0.153 3.847 15 N -0.739 5.739 16 C -0.246 4.246 17 H 0.074 0.926 18 C -0.075 4.075 19 N -0.968 5.968 20 Si 0.973 3.027 21 H -0.286 1.286 22 H -0.295 1.295 23 H -0.270 1.270 24 C 0.198 3.802 25 C -0.133 4.133 26 C -0.146 4.146 27 C -0.144 4.144 28 N -0.502 5.502 29 H 0.091 0.909 30 H 0.075 0.925 31 H 0.102 0.898 32 H 0.177 0.823 33 H 0.161 0.839 34 H 0.081 0.919 35 H 0.070 0.930 36 H 0.068 0.932 37 H 0.095 0.905 38 H 0.105 0.895 39 H 0.069 0.931 40 H 0.043 0.957 41 H 0.049 0.951 42 H 0.069 0.931 43 H 0.042 0.958 44 H 0.021 0.979 45 H 0.376 0.624 46 H 0.251 0.749 47 H 0.101 0.899 48 H 0.106 0.894 49 H 0.109 0.891 50 H 0.106 0.894 51 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.343 -6.899 18.136 26.025 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.001 3.999 3 C -0.197 4.197 4 C -0.065 4.065 5 C -0.206 4.206 6 C 0.354 3.646 7 O -0.440 6.440 8 N -0.328 5.328 9 C -0.062 4.062 10 C -0.003 4.003 11 C -0.031 4.031 12 O -0.310 6.310 13 C -0.010 4.010 14 C 0.026 3.974 15 N -0.382 5.382 16 C -0.377 4.377 17 H 0.092 0.908 18 C -0.267 4.267 19 N -0.618 5.618 20 Si 0.802 3.198 21 H -0.213 1.213 22 H -0.222 1.222 23 H -0.195 1.195 24 C 0.060 3.940 25 C -0.152 4.152 26 C -0.183 4.183 27 C -0.182 4.182 28 N -0.212 5.212 29 H 0.109 0.891 30 H 0.094 0.906 31 H 0.121 0.879 32 H 0.194 0.806 33 H 0.179 0.821 34 H 0.099 0.901 35 H 0.089 0.911 36 H 0.087 0.913 37 H 0.113 0.887 38 H 0.123 0.877 39 H 0.087 0.913 40 H 0.061 0.939 41 H 0.067 0.933 42 H 0.087 0.913 43 H 0.059 0.941 44 H 0.039 0.961 45 H 0.208 0.792 46 H 0.060 0.940 47 H 0.119 0.881 48 H 0.124 0.876 49 H 0.128 0.872 50 H 0.125 0.875 51 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -17.689 -7.842 18.329 26.652 hybrid contribution 1.270 1.246 -0.753 1.932 sum -16.419 -6.596 17.576 24.940 Atomic orbital electron populations 1.20871 0.86034 1.04801 1.04302 1.22129 0.98838 0.87956 0.90932 1.22281 0.93956 1.00652 1.02775 1.22118 0.95454 0.97042 0.91901 1.20602 0.93716 0.95938 1.10391 1.18328 0.86997 0.79244 0.80081 1.90745 1.71819 1.41129 1.40337 1.47741 1.07584 1.40141 1.37350 1.22038 0.97829 0.91988 0.94315 1.21617 0.79585 1.00130 0.98964 1.22957 0.99530 0.97332 0.83282 1.87971 1.82881 1.44618 1.15528 1.22632 0.99409 0.91863 0.87057 1.20829 0.94562 0.88980 0.93011 1.42465 1.42850 1.29571 1.23309 1.19633 1.14609 1.05739 0.97756 0.90787 1.25555 0.99082 0.99953 1.02097 1.69830 1.26440 1.26532 1.39027 0.85144 0.76534 0.78568 0.79531 1.21309 1.22185 1.19507 1.20409 0.88937 0.93148 0.91509 1.20828 0.99871 0.88169 1.06368 1.23012 0.99350 0.96186 0.99784 1.22872 1.03047 1.01039 0.91198 1.67290 1.08268 1.30502 1.15157 0.89071 0.90588 0.87888 0.80595 0.82113 0.90074 0.91074 0.91301 0.88650 0.87737 0.91270 0.93866 0.93284 0.91321 0.94063 0.96147 0.79211 0.94048 0.88108 0.87579 0.87233 0.87516 0.89212 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.05 10.16 71.24 0.72 -0.32 16 2 C 0.14 2.45 6.78 42.57 0.29 2.74 16 3 C -0.18 -2.63 9.72 22.33 0.22 -2.41 16 4 C -0.04 -0.73 7.89 22.73 0.18 -0.55 16 5 C -0.20 -5.01 4.92 -19.99 -0.10 -5.11 16 6 C 0.57 15.78 6.50 86.79 0.56 16.34 16 7 O -0.56 -18.41 15.28 -3.90 -0.06 -18.47 16 8 N -0.60 -15.36 2.84 -850.20 -2.41 -17.78 16 9 C 0.08 1.87 8.84 127.77 1.13 3.00 16 10 C 0.12 3.03 5.83 86.38 0.50 3.54 16 11 C 0.05 1.29 6.28 71.98 0.45 1.74 16 12 O -0.39 -13.40 9.20 -148.98 -1.37 -14.77 16 13 C 0.07 2.24 6.07 71.98 0.44 2.68 16 14 C 0.15 6.24 6.65 86.38 0.57 6.82 16 15 N -0.74 -38.31 5.55 -343.46 -1.91 -40.22 16 16 C -0.25 -13.86 9.99 84.03 0.84 -13.02 16 17 H 0.07 4.01 7.83 -2.91 -0.02 3.99 16 18 C -0.07 -4.30 5.50 84.86 0.47 -3.84 16 19 N -0.97 -59.36 13.06 21.65 0.28 -59.08 16 20 Si 0.97 46.07 29.55 68.60 2.03 48.10 16 21 H -0.29 -13.24 7.11 99.48 0.71 -12.54 16 22 H -0.30 -14.03 7.11 99.48 0.71 -13.33 16 23 H -0.27 -12.11 7.11 99.48 0.71 -11.40 16 24 C 0.20 5.12 6.49 42.89 0.28 5.40 16 25 C -0.13 -3.36 4.82 -11.54 -0.06 -3.42 16 26 C -0.15 -2.95 10.02 30.60 0.31 -2.65 16 27 C -0.14 -3.08 10.23 30.60 0.31 -2.77 16 28 N -0.50 -11.70 9.19 -171.06 -1.57 -13.27 16 29 H 0.09 0.80 8.14 -2.39 -0.02 0.78 16 30 H 0.08 0.83 8.14 -2.39 -0.02 0.81 16 31 H 0.10 0.52 8.07 -2.38 -0.02 0.50 16 32 H 0.18 1.28 8.06 -2.91 -0.02 1.26 16 33 H 0.16 2.24 6.33 -2.91 -0.02 2.23 16 34 H 0.08 1.41 7.10 -2.38 -0.02 1.40 16 35 H 0.07 2.06 7.22 -2.39 -0.02 2.04 16 36 H 0.07 1.57 6.22 -2.39 -0.01 1.55 16 37 H 0.10 2.36 8.07 -2.39 -0.02 2.34 16 38 H 0.10 2.51 7.36 -2.38 -0.02 2.49 16 39 H 0.07 1.74 8.14 -2.39 -0.02 1.72 16 40 H 0.04 1.21 8.14 -2.39 -0.02 1.19 16 41 H 0.05 1.63 8.14 -2.39 -0.02 1.61 16 42 H 0.07 1.92 8.14 -2.39 -0.02 1.90 16 43 H 0.04 1.62 8.14 -2.39 -0.02 1.60 16 44 H 0.02 0.86 8.14 -2.39 -0.02 0.84 16 45 H 0.38 20.86 7.67 -92.71 -0.71 20.15 16 46 H 0.25 14.87 8.31 -92.71 -0.77 14.10 16 47 H 0.10 2.84 7.20 -2.39 -0.02 2.83 16 48 H 0.11 2.17 7.54 -2.38 -0.02 2.15 16 49 H 0.11 1.86 8.14 -2.39 -0.02 1.84 16 50 H 0.11 2.07 8.14 -2.38 -0.02 2.05 16 51 H 0.09 1.95 8.14 -2.39 -0.02 1.93 16 Total: -1.00 -73.62 419.25 2.33 -71.29 By element: Atomic # 1 Polarization: 35.81 SS G_CDS: 0.22 Total: 36.03 kcal Atomic # 6 Polarization: 1.05 SS G_CDS: 7.12 Total: 8.17 kcal Atomic # 7 Polarization: -124.73 SS G_CDS: -5.61 Total: -130.34 kcal Atomic # 8 Polarization: -31.81 SS G_CDS: -1.43 Total: -33.24 kcal Atomic # 14 Polarization: 46.07 SS G_CDS: 2.03 Total: 48.10 kcal Total: -73.62 2.33 -71.29 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001677502188.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.302 kcal (2) G-P(sol) polarization free energy of solvation -73.616 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.314 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.330 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.286 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.984 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds