Wall clock time and date at job start Wed Apr 1 2020 04:27:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 C 1.38258 * 120.00010 * 2 1 4 4 C 1.38211 * 120.00113 * 180.25649 * 3 2 1 5 5 C 1.38261 * 120.00022 * 359.78451 * 4 3 2 6 6 C 1.38214 * 119.99661 * 359.95720 * 5 4 3 7 7 C 1.50703 * 119.99514 * 180.02562 * 6 5 4 8 8 H 1.09007 * 109.46446 * 180.02562 * 7 6 5 9 9 C 1.52990 * 109.47608 * 60.02074 * 7 6 5 10 10 C 1.50700 * 109.47063 * 300.01703 * 7 6 5 11 11 O 1.21281 * 120.00031 * 0.02562 * 10 7 6 12 12 N 1.34771 * 119.99947 * 180.02562 * 10 7 6 13 13 C 1.46508 * 119.99988 * 180.02562 * 12 10 7 14 14 C 1.53000 * 109.47075 * 180.02562 * 13 12 10 15 15 N 1.46898 * 109.47038 * 180.02562 * 14 13 12 16 16 C 1.46905 * 110.99898 * 66.04578 * 15 14 13 17 17 C 1.46899 * 110.99742 * 190.00021 * 15 14 13 18 18 C 1.50703 * 109.46994 * 170.00218 * 17 15 14 19 19 O 1.21297 * 120.00070 * 359.97438 * 18 17 15 20 20 N 1.34775 * 120.00221 * 179.97438 * 18 17 15 21 21 C 1.37100 * 120.00057 * 179.97438 * 20 18 17 22 22 H 1.08002 * 119.99876 * 359.97438 * 21 20 18 23 23 C 1.38949 * 120.00019 * 180.02562 * 21 20 18 24 24 N 1.31416 * 120.00104 * 359.97438 * 23 21 20 25 25 Si 1.86803 * 120.00167 * 180.02562 * 23 21 20 26 26 H 1.48492 * 109.47172 * 59.99153 * 25 23 21 27 27 H 1.48498 * 109.47024 * 179.97438 * 25 23 21 28 28 H 1.48500 * 109.46851 * 299.99528 * 25 23 21 29 29 C 1.38211 * 120.00162 * 179.75882 * 2 1 3 30 30 H 1.09001 * 109.47236 * 270.23378 * 1 2 3 31 31 H 1.09000 * 109.47285 * 30.23570 * 1 2 3 32 32 H 1.08993 * 109.47149 * 150.24066 * 1 2 3 33 33 H 1.08004 * 120.00386 * 0.02562 * 3 2 1 34 34 H 1.08001 * 120.00363 * 179.76462 * 4 3 2 35 35 H 1.07997 * 119.99874 * 179.97438 * 5 4 3 36 36 H 1.09005 * 109.47248 * 300.00181 * 9 7 6 37 37 H 1.09000 * 109.47071 * 59.99890 * 9 7 6 38 38 H 1.08998 * 109.47561 * 179.97438 * 9 7 6 39 39 H 0.97003 * 120.00462 * 0.02562 * 12 10 7 40 40 H 1.08999 * 109.46690 * 300.00104 * 13 12 10 41 41 H 1.08995 * 109.46739 * 60.00226 * 13 12 10 42 42 H 1.09002 * 109.46807 * 300.00094 * 14 13 12 43 43 H 1.09005 * 109.47331 * 59.99861 * 14 13 12 44 44 H 1.08998 * 109.46793 * 60.00404 * 16 15 14 45 45 H 1.09000 * 109.46993 * 180.02562 * 16 15 14 46 46 H 1.08994 * 109.47169 * 299.99905 * 16 15 14 47 47 H 1.09001 * 109.47083 * 289.99860 * 17 15 14 48 48 H 1.08995 * 109.47636 * 50.00064 * 17 15 14 49 49 H 0.96996 * 120.00041 * 0.02562 * 20 18 17 50 50 H 0.96998 * 120.00498 * 180.02562 * 24 23 21 51 51 H 1.08002 * 120.00200 * 0.02562 * 29 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1982 1.1974 0.0000 4 6 3.5803 1.1974 -0.0054 5 6 4.2717 0.0000 -0.0062 6 6 3.5806 -1.1969 -0.0008 7 6 4.3342 -2.5020 -0.0012 8 1 3.6258 -3.3305 0.0031 9 6 5.2185 -2.5807 1.2447 10 6 5.1958 -2.5842 -1.2348 11 8 5.1981 -1.6726 -2.0347 12 7 5.9638 -3.6707 -1.4492 13 6 6.8018 -3.7504 -2.6483 14 6 7.5658 -5.0760 -2.6493 15 7 8.4066 -5.1556 -3.8512 16 6 9.4680 -4.1405 -3.8194 17 6 8.9709 -6.5025 -4.0107 18 6 9.6187 -6.6185 -5.3664 19 8 9.6107 -5.6724 -6.1253 20 7 10.2070 -7.7735 -5.7356 21 6 10.7959 -7.8792 -6.9692 22 1 10.7880 -7.0370 -7.6452 23 6 11.4019 -9.0701 -7.3500 24 7 11.4111 -10.0951 -6.5276 25 14 12.2049 -9.2139 -9.0305 26 1 13.2887 -8.2058 -9.1491 27 1 12.7759 -10.5753 -9.1914 28 1 11.1888 -8.9748 -10.0867 29 6 2.1980 -1.1969 0.0050 30 1 -0.3634 0.0042 1.0277 31 1 -0.3634 0.8878 -0.5175 32 1 -0.3633 -0.8921 -0.5101 33 1 1.6583 2.1327 0.0004 34 1 4.1204 2.1327 -0.0092 35 1 5.3516 0.0001 -0.0108 36 1 5.9269 -1.7521 1.2405 37 1 4.5953 -2.5213 2.1370 38 1 5.7632 -3.5248 1.2447 39 1 5.9617 -4.4001 -0.8097 40 1 6.1720 -3.6937 -3.5361 41 1 7.5104 -2.9222 -2.6519 42 1 8.1955 -5.1331 -1.7614 43 1 6.8569 -5.9040 -2.6458 44 1 10.0959 -4.2988 -2.9426 45 1 10.0753 -4.2214 -4.7210 46 1 9.0202 -3.1480 -3.7713 47 1 9.7167 -6.6781 -3.2354 48 1 8.1753 -7.2424 -3.9237 49 1 10.2131 -8.5303 -5.1289 50 1 11.8344 -10.9264 -6.7932 51 1 1.6581 -2.1323 0.0086 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001690980535.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:27:54 Heat of formation + Delta-G solvation = -49.807694 kcal Electronic energy + Delta-G solvation = -29116.732639 eV Core-core repulsion = 25015.726035 eV Total energy + Delta-G solvation = -4101.006604 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -40.59574 -39.17062 -38.61491 -36.81404 -34.79550 -34.66876 -33.80462 -32.55281 -31.25711 -30.34394 -29.17684 -27.69226 -27.10773 -25.59607 -24.89090 -23.77938 -22.41663 -21.60474 -21.24595 -19.77143 -19.17299 -17.85770 -17.24068 -16.97200 -16.35885 -16.11095 -15.83055 -15.61894 -15.19330 -14.88930 -14.62031 -14.61735 -14.17687 -14.03272 -13.83191 -13.82261 -13.46571 -13.37852 -13.27273 -13.14770 -12.78493 -12.65446 -12.52545 -12.13437 -12.04071 -11.96209 -11.81427 -11.52087 -11.40996 -11.28039 -11.25697 -11.14852 -11.03721 -10.92707 -10.43947 -10.21587 -9.95381 -9.47135 -9.19890 -9.02925 -8.79270 -8.48538 -7.99324 -7.89556 -6.41936 -3.82732 1.09639 1.18597 2.46679 2.88138 3.20300 3.25968 3.30606 3.55337 3.89696 4.04835 4.16865 4.25948 4.39163 4.59499 4.67341 4.71984 4.80389 4.84760 4.91868 4.98684 5.06686 5.11685 5.15847 5.22705 5.24410 5.27059 5.37409 5.38253 5.44081 5.51395 5.62658 5.66566 5.68043 5.78469 5.84189 5.88395 5.89895 5.92346 6.00535 6.22830 6.25488 6.27881 6.32606 6.37499 6.55115 6.77951 7.18175 7.28636 7.32978 7.55029 8.04831 8.05939 8.61566 9.17957 9.53901 10.05921 10.75706 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.028986 B = 0.001444 C = 0.001435 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 965.737866 B =19382.372915 C =19511.291022 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.091 4.091 3 C -0.121 4.121 4 C -0.118 4.118 5 C -0.089 4.089 6 C -0.063 4.063 7 C -0.071 4.071 8 H 0.104 0.896 9 C -0.141 4.141 10 C 0.516 3.484 11 O -0.526 6.526 12 N -0.729 5.729 13 C 0.122 3.878 14 C 0.045 3.955 15 N -0.515 5.515 16 C 0.018 3.982 17 C 0.047 3.953 18 C 0.443 3.557 19 O -0.576 6.576 20 N -0.564 5.564 21 C -0.300 4.300 22 H 0.103 0.897 23 C 0.023 3.977 24 N -0.903 5.903 25 Si 0.931 3.069 26 H -0.274 1.274 27 H -0.285 1.285 28 H -0.273 1.273 29 C -0.112 4.112 30 H 0.068 0.932 31 H 0.065 0.935 32 H 0.065 0.935 33 H 0.119 0.881 34 H 0.121 0.879 35 H 0.118 0.882 36 H 0.063 0.937 37 H 0.070 0.930 38 H 0.065 0.935 39 H 0.398 0.602 40 H 0.079 0.921 41 H 0.070 0.930 42 H 0.036 0.964 43 H 0.079 0.921 44 H 0.015 0.985 45 H 0.098 0.902 46 H 0.063 0.937 47 H 0.048 0.952 48 H 0.088 0.912 49 H 0.392 0.608 50 H 0.272 0.728 51 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.430 14.332 21.490 31.161 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.091 4.091 3 C -0.139 4.139 4 C -0.136 4.136 5 C -0.107 4.107 6 C -0.064 4.064 7 C -0.093 4.093 8 H 0.122 0.878 9 C -0.198 4.198 10 C 0.301 3.699 11 O -0.402 6.402 12 N -0.381 5.381 13 C -0.002 4.002 14 C -0.084 4.084 15 N -0.239 5.239 16 C -0.129 4.129 17 C -0.084 4.084 18 C 0.228 3.772 19 O -0.460 6.460 20 N -0.200 5.200 21 C -0.429 4.429 22 H 0.121 0.879 23 C -0.179 4.179 24 N -0.544 5.544 25 Si 0.758 3.242 26 H -0.199 1.199 27 H -0.210 1.210 28 H -0.199 1.199 29 C -0.130 4.130 30 H 0.087 0.913 31 H 0.084 0.916 32 H 0.084 0.916 33 H 0.137 0.863 34 H 0.139 0.861 35 H 0.136 0.864 36 H 0.083 0.917 37 H 0.089 0.911 38 H 0.084 0.916 39 H 0.232 0.768 40 H 0.097 0.903 41 H 0.088 0.912 42 H 0.054 0.946 43 H 0.097 0.903 44 H 0.034 0.966 45 H 0.116 0.884 46 H 0.081 0.919 47 H 0.066 0.934 48 H 0.107 0.893 49 H 0.225 0.775 50 H 0.082 0.918 51 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -17.625 15.529 19.926 30.803 hybrid contribution 0.991 -1.283 0.518 1.702 sum -16.634 14.246 20.444 29.960 Atomic orbital electron populations 1.20773 0.91243 1.02805 1.02161 1.19835 0.95967 0.93080 1.00221 1.21020 0.94291 0.97425 1.01153 1.21099 0.94263 0.97974 1.00243 1.20883 0.99789 0.91794 0.98233 1.19251 0.93202 0.93518 1.00418 1.20299 0.97393 0.97368 0.94221 0.87752 1.21801 0.99392 1.02738 0.95900 1.20427 0.80026 0.82050 0.87382 1.90755 1.65197 1.37604 1.46604 1.45937 1.45555 1.20990 1.25651 1.21340 0.93756 0.97680 0.87408 1.22252 0.96751 0.97358 0.92053 1.61439 1.22588 1.04079 1.35829 1.22625 0.93612 0.94542 1.02165 1.21865 0.98833 0.90553 0.97141 1.19708 0.84286 0.84507 0.88659 1.90496 1.62972 1.38320 1.54240 1.41850 1.49418 1.12032 1.16747 1.19659 1.31294 0.99334 0.92621 0.87940 1.25252 0.97901 0.95041 0.99677 1.69602 1.44901 1.03363 1.36519 0.85917 0.79400 0.77176 0.81729 1.19928 1.20993 1.19880 1.20861 0.93149 0.97671 1.01368 0.91303 0.91593 0.91577 0.86290 0.86119 0.86405 0.91744 0.91113 0.91629 0.76768 0.90284 0.91188 0.94594 0.90301 0.96634 0.88369 0.91869 0.93363 0.89331 0.77510 0.91841 0.86216 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.68 10.01 36.00 0.36 -0.32 16 2 C -0.09 -0.78 5.88 -104.63 -0.62 -1.39 16 3 C -0.12 -1.04 9.70 -39.58 -0.38 -1.43 16 4 C -0.12 -1.09 10.05 -39.58 -0.40 -1.49 16 5 C -0.09 -0.91 7.93 -39.58 -0.31 -1.22 16 6 C -0.06 -0.61 4.40 -104.62 -0.46 -1.07 16 7 C -0.07 -0.55 2.90 -92.93 -0.27 -0.82 16 8 H 0.10 0.61 7.88 -51.93 -0.41 0.20 16 9 C -0.14 -0.79 8.90 37.15 0.33 -0.46 16 10 C 0.52 5.64 7.02 -10.99 -0.08 5.56 16 11 O -0.53 -8.12 15.11 5.56 0.08 -8.03 16 12 N -0.73 -6.73 5.45 -60.29 -0.33 -7.06 16 13 C 0.12 1.45 5.60 -4.04 -0.02 1.42 16 14 C 0.04 0.52 5.07 -3.83 -0.02 0.51 16 15 N -0.52 -8.39 4.50 -244.37 -1.10 -9.49 16 16 C 0.02 0.30 8.96 60.07 0.54 0.83 16 17 C 0.05 0.82 5.45 -4.98 -0.03 0.80 16 18 C 0.44 10.36 7.47 -10.98 -0.08 10.28 16 19 O -0.58 -15.47 13.91 5.54 0.08 -15.39 16 20 N -0.56 -14.15 5.29 -10.96 -0.06 -14.21 16 21 C -0.30 -8.31 9.68 -14.93 -0.14 -8.46 16 22 H 0.10 2.98 7.16 -52.49 -0.38 2.61 16 23 C 0.02 0.61 5.50 -17.47 -0.10 0.51 16 24 N -0.90 -24.36 13.05 55.50 0.72 -23.64 16 25 Si 0.93 21.01 29.55 -169.99 -5.02 15.99 16 26 H -0.27 -6.15 7.11 56.52 0.40 -5.74 16 27 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 28 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 29 C -0.11 -0.99 9.33 -39.58 -0.37 -1.36 16 30 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 31 H 0.07 0.35 8.09 -51.93 -0.42 -0.07 16 32 H 0.07 0.36 8.08 -51.93 -0.42 -0.06 16 33 H 0.12 0.78 8.06 -52.48 -0.42 0.36 16 34 H 0.12 0.90 8.06 -52.49 -0.42 0.47 16 35 H 0.12 1.19 7.52 -52.49 -0.39 0.80 16 36 H 0.06 0.41 7.39 -51.93 -0.38 0.03 16 37 H 0.07 0.34 8.14 -51.93 -0.42 -0.09 16 38 H 0.06 0.27 7.57 -51.93 -0.39 -0.13 16 39 H 0.40 2.43 7.89 -40.82 -0.32 2.10 16 40 H 0.08 1.12 8.14 -51.93 -0.42 0.70 16 41 H 0.07 0.91 6.55 -51.93 -0.34 0.57 16 42 H 0.04 0.37 8.12 -51.93 -0.42 -0.05 16 43 H 0.08 0.83 7.93 -51.93 -0.41 0.41 16 44 H 0.02 0.22 8.14 -51.93 -0.42 -0.20 16 45 H 0.10 1.95 5.83 -51.93 -0.30 1.64 16 46 H 0.06 0.93 6.47 -51.93 -0.34 0.59 16 47 H 0.05 0.76 8.12 -51.93 -0.42 0.34 16 48 H 0.09 1.37 7.93 -51.93 -0.41 0.96 16 49 H 0.39 9.36 7.90 -40.82 -0.32 9.04 16 50 H 0.27 6.97 8.31 -40.82 -0.34 6.63 16 51 H 0.12 0.83 7.95 -52.49 -0.42 0.41 16 LS Contribution 417.40 15.07 6.29 6.29 Total: -1.00 -34.26 417.40 -9.56 -43.82 By element: Atomic # 1 Polarization: 18.00 SS G_CDS: -8.17 Total: 9.82 kcal Atomic # 6 Polarization: 3.95 SS G_CDS: -2.05 Total: 1.90 kcal Atomic # 7 Polarization: -53.64 SS G_CDS: -0.76 Total: -54.40 kcal Atomic # 8 Polarization: -23.59 SS G_CDS: 0.16 Total: -23.43 kcal Atomic # 14 Polarization: 21.01 SS G_CDS: -5.02 Total: 15.99 kcal Total LS contribution 6.29 Total: 6.29 kcal Total: -34.26 -9.56 -43.82 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001690980535.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.988 kcal (2) G-P(sol) polarization free energy of solvation -34.261 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.249 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.559 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.820 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.808 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds