Wall clock time and date at job start Wed Apr 1 2020 04:27:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 C 1.38258 * 120.00010 * 2 1 4 4 C 1.38211 * 120.00113 * 180.25649 * 3 2 1 5 5 C 1.38261 * 120.00022 * 359.78451 * 4 3 2 6 6 C 1.38214 * 119.99661 * 359.95720 * 5 4 3 7 7 C 1.50703 * 119.99514 * 180.02562 * 6 5 4 8 8 H 1.09007 * 109.46446 * 180.02562 * 7 6 5 9 9 C 1.52990 * 109.47608 * 60.02074 * 7 6 5 10 10 C 1.50700 * 109.47063 * 300.01703 * 7 6 5 11 11 O 1.21281 * 120.00031 * 0.02562 * 10 7 6 12 12 N 1.34771 * 119.99947 * 180.02562 * 10 7 6 13 13 C 1.46508 * 119.99988 * 180.02562 * 12 10 7 14 14 C 1.53000 * 109.47075 * 180.02562 * 13 12 10 15 15 N 1.46898 * 109.47038 * 180.02562 * 14 13 12 16 16 C 1.46905 * 110.99898 * 66.04578 * 15 14 13 17 17 C 1.46899 * 110.99742 * 190.00021 * 15 14 13 18 18 C 1.50703 * 109.46994 * 170.00218 * 17 15 14 19 19 O 1.21297 * 120.00070 * 359.97438 * 18 17 15 20 20 N 1.34775 * 120.00221 * 179.97438 * 18 17 15 21 21 C 1.37100 * 120.00057 * 179.97438 * 20 18 17 22 22 H 1.08002 * 119.99876 * 359.97438 * 21 20 18 23 23 C 1.38949 * 120.00019 * 180.02562 * 21 20 18 24 24 N 1.31416 * 120.00104 * 359.97438 * 23 21 20 25 25 Si 1.86803 * 120.00167 * 180.02562 * 23 21 20 26 26 H 1.48492 * 109.47172 * 59.99153 * 25 23 21 27 27 H 1.48498 * 109.47024 * 179.97438 * 25 23 21 28 28 H 1.48500 * 109.46851 * 299.99528 * 25 23 21 29 29 C 1.38211 * 120.00162 * 179.75882 * 2 1 3 30 30 H 1.09001 * 109.47236 * 270.23378 * 1 2 3 31 31 H 1.09000 * 109.47285 * 30.23570 * 1 2 3 32 32 H 1.08993 * 109.47149 * 150.24066 * 1 2 3 33 33 H 1.08004 * 120.00386 * 0.02562 * 3 2 1 34 34 H 1.08001 * 120.00363 * 179.76462 * 4 3 2 35 35 H 1.07997 * 119.99874 * 179.97438 * 5 4 3 36 36 H 1.09005 * 109.47248 * 300.00181 * 9 7 6 37 37 H 1.09000 * 109.47071 * 59.99890 * 9 7 6 38 38 H 1.08998 * 109.47561 * 179.97438 * 9 7 6 39 39 H 0.97003 * 120.00462 * 0.02562 * 12 10 7 40 40 H 1.08999 * 109.46690 * 300.00104 * 13 12 10 41 41 H 1.08995 * 109.46739 * 60.00226 * 13 12 10 42 42 H 1.09002 * 109.46807 * 300.00094 * 14 13 12 43 43 H 1.09005 * 109.47331 * 59.99861 * 14 13 12 44 44 H 1.08998 * 109.46793 * 60.00404 * 16 15 14 45 45 H 1.09000 * 109.46993 * 180.02562 * 16 15 14 46 46 H 1.08994 * 109.47169 * 299.99905 * 16 15 14 47 47 H 1.09001 * 109.47083 * 289.99860 * 17 15 14 48 48 H 1.08995 * 109.47636 * 50.00064 * 17 15 14 49 49 H 0.96996 * 120.00041 * 0.02562 * 20 18 17 50 50 H 0.96998 * 120.00498 * 180.02562 * 24 23 21 51 51 H 1.08002 * 120.00200 * 0.02562 * 29 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1982 1.1974 0.0000 4 6 3.5803 1.1974 -0.0054 5 6 4.2717 0.0000 -0.0062 6 6 3.5806 -1.1969 -0.0008 7 6 4.3342 -2.5020 -0.0012 8 1 3.6258 -3.3305 0.0031 9 6 5.2185 -2.5807 1.2447 10 6 5.1958 -2.5842 -1.2348 11 8 5.1981 -1.6726 -2.0347 12 7 5.9638 -3.6707 -1.4492 13 6 6.8018 -3.7504 -2.6483 14 6 7.5658 -5.0760 -2.6493 15 7 8.4066 -5.1556 -3.8512 16 6 9.4680 -4.1405 -3.8194 17 6 8.9709 -6.5025 -4.0107 18 6 9.6187 -6.6185 -5.3664 19 8 9.6107 -5.6724 -6.1253 20 7 10.2070 -7.7735 -5.7356 21 6 10.7959 -7.8792 -6.9692 22 1 10.7880 -7.0370 -7.6452 23 6 11.4019 -9.0701 -7.3500 24 7 11.4111 -10.0951 -6.5276 25 14 12.2049 -9.2139 -9.0305 26 1 13.2887 -8.2058 -9.1491 27 1 12.7759 -10.5753 -9.1914 28 1 11.1888 -8.9748 -10.0867 29 6 2.1980 -1.1969 0.0050 30 1 -0.3634 0.0042 1.0277 31 1 -0.3634 0.8878 -0.5175 32 1 -0.3633 -0.8921 -0.5101 33 1 1.6583 2.1327 0.0004 34 1 4.1204 2.1327 -0.0092 35 1 5.3516 0.0001 -0.0108 36 1 5.9269 -1.7521 1.2405 37 1 4.5953 -2.5213 2.1370 38 1 5.7632 -3.5248 1.2447 39 1 5.9617 -4.4001 -0.8097 40 1 6.1720 -3.6937 -3.5361 41 1 7.5104 -2.9222 -2.6519 42 1 8.1955 -5.1331 -1.7614 43 1 6.8569 -5.9040 -2.6458 44 1 10.0959 -4.2988 -2.9426 45 1 10.0753 -4.2214 -4.7210 46 1 9.0202 -3.1480 -3.7713 47 1 9.7167 -6.6781 -3.2354 48 1 8.1753 -7.2424 -3.9237 49 1 10.2131 -8.5303 -5.1289 50 1 11.8344 -10.9264 -6.7932 51 1 1.6581 -2.1323 0.0086 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001690980535.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:27:52 Heat of formation + Delta-G solvation = -73.846341 kcal Electronic energy + Delta-G solvation = -29117.775033 eV Core-core repulsion = 25015.726035 eV Total energy + Delta-G solvation = -4102.048998 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 2.07 seconds Orbital eigenvalues (eV) -41.37063 -40.39742 -39.82103 -38.17215 -36.01327 -35.55932 -35.36819 -33.27041 -33.15865 -31.14584 -30.13394 -29.03335 -27.66649 -27.04922 -25.93897 -24.98602 -23.09401 -22.47798 -22.24857 -20.98392 -20.52259 -19.84532 -18.09922 -17.70702 -17.64067 -17.21434 -16.88578 -16.57344 -16.45312 -16.19529 -15.98523 -15.63564 -15.48764 -15.11608 -15.02088 -14.62604 -14.57117 -14.31362 -14.28257 -13.91969 -13.77362 -13.50290 -13.44191 -13.15719 -13.03388 -13.02335 -12.92215 -12.63024 -12.58739 -12.55243 -12.43755 -12.40647 -12.15567 -12.09055 -11.86140 -11.73602 -11.44723 -10.83645 -10.28321 -10.10713 -9.98422 -9.69193 -9.44241 -9.23635 -8.45237 -5.93536 0.43138 0.51923 1.40236 1.42203 1.52689 1.63331 2.02146 2.07708 2.31208 2.82493 2.98733 3.21839 3.43346 3.55568 3.75257 3.86650 4.01913 4.05823 4.10159 4.18950 4.26139 4.28235 4.31061 4.36614 4.46858 4.53656 4.53968 4.58542 4.63657 4.63890 4.73249 4.85565 4.86036 4.89376 4.91514 4.96244 5.01710 5.19051 5.20723 5.25544 5.32726 5.38658 5.42381 5.58669 5.68655 5.71703 5.85765 6.05221 6.14844 6.17403 6.55809 6.62957 7.15008 7.26460 7.58722 8.15363 8.71794 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.028986 B = 0.001444 C = 0.001435 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 965.737866 B =19382.372915 C =19511.291022 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.099 4.099 3 C -0.132 4.132 4 C -0.132 4.132 5 C -0.111 4.111 6 C -0.076 4.076 7 C -0.064 4.064 8 H 0.131 0.869 9 C -0.137 4.137 10 C 0.513 3.487 11 O -0.578 6.578 12 N -0.712 5.712 13 C 0.131 3.869 14 C 0.053 3.947 15 N -0.541 5.541 16 C 0.025 3.975 17 C 0.061 3.939 18 C 0.439 3.561 19 O -0.617 6.617 20 N -0.573 5.573 21 C -0.334 4.334 22 H 0.077 0.923 23 C -0.011 4.011 24 N -0.919 5.919 25 Si 0.991 3.009 26 H -0.273 1.273 27 H -0.270 1.270 28 H -0.274 1.274 29 C -0.124 4.124 30 H 0.081 0.919 31 H 0.071 0.929 32 H 0.071 0.929 33 H 0.136 0.864 34 H 0.130 0.870 35 H 0.108 0.892 36 H 0.050 0.950 37 H 0.082 0.918 38 H 0.086 0.914 39 H 0.418 0.582 40 H 0.051 0.949 41 H 0.055 0.945 42 H 0.063 0.937 43 H 0.099 0.901 44 H 0.036 0.964 45 H 0.055 0.945 46 H 0.071 0.929 47 H 0.073 0.927 48 H 0.115 0.885 49 H 0.397 0.603 50 H 0.277 0.723 51 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.600 13.024 23.524 32.695 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.099 4.099 3 C -0.150 4.150 4 C -0.150 4.150 5 C -0.129 4.129 6 C -0.076 4.076 7 C -0.085 4.085 8 H 0.149 0.851 9 C -0.194 4.194 10 C 0.300 3.700 11 O -0.457 6.457 12 N -0.365 5.365 13 C 0.006 3.994 14 C -0.075 4.075 15 N -0.265 5.265 16 C -0.123 4.123 17 C -0.070 4.070 18 C 0.226 3.774 19 O -0.503 6.503 20 N -0.211 5.211 21 C -0.464 4.464 22 H 0.095 0.905 23 C -0.211 4.211 24 N -0.560 5.560 25 Si 0.814 3.186 26 H -0.198 1.198 27 H -0.194 1.194 28 H -0.199 1.199 29 C -0.142 4.142 30 H 0.100 0.900 31 H 0.090 0.910 32 H 0.090 0.910 33 H 0.154 0.846 34 H 0.148 0.852 35 H 0.126 0.874 36 H 0.070 0.930 37 H 0.101 0.899 38 H 0.105 0.895 39 H 0.255 0.745 40 H 0.070 0.930 41 H 0.073 0.927 42 H 0.081 0.919 43 H 0.118 0.882 44 H 0.054 0.946 45 H 0.074 0.926 46 H 0.090 0.910 47 H 0.091 0.909 48 H 0.133 0.867 49 H 0.231 0.769 50 H 0.087 0.913 51 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -18.803 14.179 22.021 32.241 hybrid contribution 1.305 -0.798 -0.088 1.533 sum -17.497 13.381 21.933 31.085 Atomic orbital electron populations 1.20813 0.89418 1.03404 1.03149 1.20226 0.97455 0.92964 0.99299 1.21305 0.94158 0.98509 1.01045 1.21337 0.94977 0.98267 1.00395 1.20972 0.99532 0.92784 0.99607 1.19518 0.93840 0.94010 1.00271 1.20347 0.97431 0.97429 0.93261 0.85136 1.21812 0.99123 1.03337 0.95153 1.21057 0.79829 0.81376 0.87712 1.90737 1.66895 1.39511 1.48582 1.45734 1.44476 1.21275 1.25056 1.21061 0.93267 0.97561 0.87515 1.22252 0.96589 0.97600 0.91016 1.61322 1.22870 1.03336 1.39021 1.22452 0.93661 0.95282 1.00888 1.21733 0.99862 0.91960 0.93434 1.20853 0.82894 0.83103 0.90551 1.90478 1.64047 1.39525 1.56255 1.41908 1.50052 1.12910 1.16235 1.19610 1.33509 0.99348 0.93904 0.90496 1.25979 0.97789 0.94327 1.02957 1.69656 1.44970 1.03625 1.37760 0.85026 0.78348 0.77678 0.77506 1.19834 1.19407 1.19902 1.21171 0.93060 0.98740 1.01220 0.90019 0.91014 0.90986 0.84569 0.85175 0.87432 0.93045 0.89860 0.89500 0.74453 0.93029 0.92674 0.91905 0.88230 0.94564 0.92596 0.91049 0.90869 0.86670 0.76929 0.91320 0.84272 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.12 10.01 71.23 0.71 -0.41 16 2 C -0.10 -1.59 5.88 -19.87 -0.12 -1.70 16 3 C -0.13 -2.23 9.70 22.27 0.22 -2.01 16 4 C -0.13 -2.51 10.05 22.27 0.22 -2.28 16 5 C -0.11 -2.33 7.93 22.27 0.18 -2.15 16 6 C -0.08 -1.40 4.40 -19.86 -0.09 -1.49 16 7 C -0.06 -0.87 2.90 -12.29 -0.04 -0.91 16 8 H 0.13 1.10 7.88 -2.38 -0.02 1.08 16 9 C -0.14 -1.22 8.90 71.98 0.64 -0.58 16 10 C 0.51 10.77 7.02 87.66 0.62 11.38 16 11 O -0.58 -18.28 15.11 -3.03 -0.05 -18.32 16 12 N -0.71 -11.71 5.45 -463.06 -2.52 -14.23 16 13 C 0.13 2.96 5.60 86.38 0.48 3.44 16 14 C 0.05 1.09 5.07 86.30 0.44 1.53 16 15 N -0.54 -16.82 4.50 -927.05 -4.17 -20.99 16 16 C 0.03 0.80 8.96 127.69 1.14 1.95 16 17 C 0.06 2.00 5.45 85.56 0.47 2.47 16 18 C 0.44 20.66 7.47 87.66 0.66 21.32 16 19 O -0.62 -34.24 13.91 -3.08 -0.04 -34.28 16 20 N -0.57 -29.12 5.29 -306.98 -1.62 -30.74 16 21 C -0.33 -18.96 9.68 84.04 0.81 -18.15 16 22 H 0.08 4.67 7.16 -2.91 -0.02 4.65 16 23 C -0.01 -0.57 5.50 84.93 0.47 -0.10 16 24 N -0.92 -49.13 13.05 21.66 0.28 -48.85 16 25 Si 0.99 42.99 29.55 68.60 2.03 45.02 16 26 H -0.27 -11.75 7.11 99.48 0.71 -11.04 16 27 H -0.27 -10.98 7.11 99.48 0.71 -10.27 16 28 H -0.27 -11.82 7.11 99.48 0.71 -11.12 16 29 C -0.12 -2.04 9.33 22.27 0.21 -1.83 16 30 H 0.08 0.62 8.14 -2.39 -0.02 0.60 16 31 H 0.07 0.64 8.09 -2.39 -0.02 0.62 16 32 H 0.07 0.64 8.08 -2.39 -0.02 0.62 16 33 H 0.14 1.68 8.06 -2.91 -0.02 1.65 16 34 H 0.13 2.03 8.06 -2.91 -0.02 2.01 16 35 H 0.11 2.35 7.52 -2.91 -0.02 2.33 16 36 H 0.05 0.61 7.39 -2.38 -0.02 0.59 16 37 H 0.08 0.57 8.14 -2.39 -0.02 0.55 16 38 H 0.09 0.40 7.57 -2.39 -0.02 0.38 16 39 H 0.42 3.59 7.89 -92.71 -0.73 2.85 16 40 H 0.05 1.47 8.14 -2.39 -0.02 1.45 16 41 H 0.05 1.42 6.55 -2.39 -0.02 1.41 16 42 H 0.06 1.01 8.12 -2.39 -0.02 0.99 16 43 H 0.10 1.67 7.93 -2.38 -0.02 1.66 16 44 H 0.04 0.99 8.14 -2.39 -0.02 0.97 16 45 H 0.06 2.28 5.83 -2.39 -0.01 2.27 16 46 H 0.07 2.12 6.47 -2.39 -0.02 2.10 16 47 H 0.07 2.07 8.12 -2.39 -0.02 2.05 16 48 H 0.12 3.19 7.93 -2.39 -0.02 3.17 16 49 H 0.40 18.93 7.90 -92.71 -0.73 18.19 16 50 H 0.28 13.92 8.31 -92.71 -0.77 13.15 16 51 H 0.14 1.61 7.95 -2.91 -0.02 1.59 16 Total: -1.00 -77.81 417.40 0.41 -77.40 By element: Atomic # 1 Polarization: 35.04 SS G_CDS: -0.52 Total: 34.52 kcal Atomic # 6 Polarization: 3.45 SS G_CDS: 7.02 Total: 10.47 kcal Atomic # 7 Polarization: -106.77 SS G_CDS: -8.03 Total: -114.81 kcal Atomic # 8 Polarization: -52.52 SS G_CDS: -0.09 Total: -52.61 kcal Atomic # 14 Polarization: 42.99 SS G_CDS: 2.03 Total: 45.02 kcal Total: -77.81 0.41 -77.40 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001690980535.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.554 kcal (2) G-P(sol) polarization free energy of solvation -77.807 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.253 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.407 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.400 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.846 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.07 seconds