Wall clock time and date at job start Wed Apr 1 2020 04:27:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38257 * 120.00002 * 2 1 4 4 C 1.38212 * 119.99915 * 180.02562 * 3 2 1 5 5 C 1.38262 * 120.00074 * 0.02562 * 4 3 2 6 6 C 1.38207 * 120.00061 * 359.97438 * 5 4 3 7 7 C 1.50699 * 120.00059 * 179.97438 * 6 5 4 8 8 H 1.08996 * 109.47258 * 180.02562 * 7 6 5 9 9 C 1.53002 * 109.47389 * 300.00176 * 7 6 5 10 10 C 1.50696 * 109.47192 * 60.00231 * 7 6 5 11 11 O 1.21284 * 120.00109 * 0.02562 * 10 7 6 12 12 N 1.34777 * 120.00137 * 180.02562 * 10 7 6 13 13 C 1.46506 * 119.99873 * 180.02562 * 12 10 7 14 14 C 1.53002 * 109.47035 * 179.97438 * 13 12 10 15 15 N 1.46896 * 109.47243 * 179.97438 * 14 13 12 16 16 C 1.46900 * 111.00141 * 66.04370 * 15 14 13 17 17 C 1.46898 * 110.99884 * 189.99718 * 15 14 13 18 18 C 1.50710 * 109.46709 * 169.99692 * 17 15 14 19 19 O 1.21286 * 120.00152 * 0.02562 * 18 17 15 20 20 N 1.34777 * 119.99604 * 179.97438 * 18 17 15 21 21 C 1.37093 * 120.00027 * 180.02562 * 20 18 17 22 22 H 1.08001 * 119.99632 * 359.97438 * 21 20 18 23 23 C 1.38948 * 120.00446 * 179.97438 * 21 20 18 24 24 N 1.31406 * 120.00166 * 179.97438 * 23 21 20 25 25 Si 1.86800 * 119.99684 * 0.02562 * 23 21 20 26 26 H 1.48501 * 109.47289 * 90.00056 * 25 23 21 27 27 H 1.48502 * 109.46814 * 209.99690 * 25 23 21 28 28 H 1.48500 * 109.47271 * 329.99728 * 25 23 21 29 29 C 1.38216 * 120.00127 * 180.27845 * 2 1 3 30 30 H 1.09001 * 109.46647 * 89.99823 * 1 2 3 31 31 H 1.09003 * 109.46838 * 209.99382 * 1 2 3 32 32 H 1.09001 * 109.46689 * 329.99407 * 1 2 3 33 33 H 1.07996 * 120.00255 * 0.02562 * 3 2 1 34 34 H 1.07996 * 120.00227 * 179.97438 * 4 3 2 35 35 H 1.08008 * 119.99564 * 179.97438 * 5 4 3 36 36 H 1.08992 * 109.47513 * 179.97438 * 9 7 6 37 37 H 1.09002 * 109.46838 * 300.00434 * 9 7 6 38 38 H 1.09004 * 109.47006 * 59.99931 * 9 7 6 39 39 H 0.96999 * 120.00047 * 359.97438 * 12 10 7 40 40 H 1.09004 * 109.47073 * 299.99562 * 13 12 10 41 41 H 1.09000 * 109.47212 * 59.99645 * 13 12 10 42 42 H 1.09004 * 109.46930 * 299.99770 * 14 13 12 43 43 H 1.09004 * 109.47059 * 59.99372 * 14 13 12 44 44 H 1.08996 * 109.46988 * 59.99974 * 16 15 14 45 45 H 1.09000 * 109.47343 * 180.02562 * 16 15 14 46 46 H 1.09000 * 109.46850 * 300.00334 * 16 15 14 47 47 H 1.08994 * 109.47665 * 289.99774 * 17 15 14 48 48 H 1.08996 * 109.47097 * 50.00492 * 17 15 14 49 49 H 0.96998 * 120.00220 * 0.02562 * 20 18 17 50 50 H 0.97002 * 120.00405 * 180.02562 * 24 23 21 51 51 H 1.08000 * 119.99721 * 0.02562 * 29 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1973 0.0000 4 6 3.5804 1.1973 -0.0005 5 6 4.2717 -0.0001 -0.0016 6 6 3.5807 -1.1970 -0.0016 7 6 4.3342 -2.5021 -0.0034 8 1 3.6259 -3.3305 -0.0035 9 6 5.2124 -2.5823 -1.2536 10 6 5.2020 -2.5828 1.2260 11 8 5.2077 -1.6705 2.0253 12 7 5.9718 -3.6687 1.4374 13 6 6.8150 -3.7473 2.6330 14 6 7.5801 -5.0723 2.6311 15 7 8.4260 -5.1509 3.8295 16 6 7.6080 -5.2213 5.0477 17 6 9.3489 -6.2909 3.7485 18 6 10.3583 -6.2002 4.8640 19 8 10.3130 -5.2770 5.6493 20 7 11.3108 -7.1455 4.9893 21 6 12.2287 -7.0633 6.0043 22 1 12.1888 -6.2408 6.7031 23 6 13.2103 -8.0381 6.1339 24 7 14.0905 -7.9590 7.1065 25 14 13.2797 -9.4603 4.9248 26 1 14.1471 -9.0923 3.7769 27 1 13.8368 -10.6588 5.6018 28 1 11.9105 -9.7603 4.4343 29 6 2.1981 -1.1970 -0.0058 30 1 -0.3633 0.0000 -1.0277 31 1 -0.3633 -0.8901 0.5138 32 1 -0.3633 0.8900 0.5139 33 1 1.6584 2.1326 0.0004 34 1 4.1205 2.1326 -0.0010 35 1 5.3518 0.0000 -0.0024 36 1 5.7578 -3.5260 -1.2547 37 1 4.5847 -2.5239 -2.1429 38 1 5.9208 -1.7538 -1.2539 39 1 5.9670 -4.3984 0.7985 40 1 7.5230 -2.9185 2.6334 41 1 6.1890 -3.6908 3.5235 42 1 6.8718 -5.9008 2.6309 43 1 8.2060 -5.1292 1.7405 44 1 6.9739 -6.1070 5.0088 45 1 8.2592 -5.2783 5.9199 46 1 6.9839 -4.3305 5.1182 47 1 8.7874 -7.2204 3.8414 48 1 9.8654 -6.2727 2.7889 49 1 11.3468 -7.8839 4.3615 50 1 14.7760 -8.6393 7.1968 51 1 1.6581 -2.1322 -0.0108 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001690980536.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:27:59 Heat of formation + Delta-G solvation = -42.527713 kcal Electronic energy + Delta-G solvation = -29172.557824 eV Core-core repulsion = 25071.866903 eV Total energy + Delta-G solvation = -4100.690920 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -40.62364 -39.21552 -38.77063 -36.93701 -34.82085 -34.72651 -33.86887 -32.57211 -31.69044 -30.38740 -29.27083 -27.84361 -27.12687 -25.65674 -24.89570 -23.68513 -22.43210 -21.61957 -21.28763 -19.79819 -19.37043 -18.28301 -17.27916 -16.99332 -16.40903 -16.04978 -16.00997 -15.56827 -15.26246 -15.04172 -14.91646 -14.49876 -14.27188 -14.08450 -13.83088 -13.80301 -13.56501 -13.34819 -13.21099 -13.08944 -12.86492 -12.67153 -12.54447 -12.44976 -12.07689 -12.05433 -11.94389 -11.86841 -11.54997 -11.39257 -11.25976 -11.18249 -11.11289 -11.05583 -10.61266 -9.99839 -9.97352 -9.55241 -9.24033 -9.04894 -8.81073 -8.61552 -8.19381 -8.02792 -6.31747 -3.83234 1.07815 1.16806 2.43238 2.83752 3.00629 3.05373 3.13784 3.53168 3.72086 3.99659 4.09321 4.14546 4.35380 4.57083 4.64169 4.69949 4.71858 4.77443 4.83317 4.90543 4.98588 5.04276 5.13882 5.19741 5.21238 5.24818 5.30837 5.35527 5.42517 5.46778 5.49024 5.58257 5.65604 5.75257 5.76769 5.80387 5.82032 5.86970 5.90557 5.95643 6.19598 6.23981 6.30802 6.35733 6.49127 6.76217 7.06626 7.20936 7.26181 7.57410 8.01316 8.13895 8.59347 8.94656 9.41526 9.82416 10.81385 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.029957 B = 0.001497 C = 0.001477 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 934.446761 B =18696.905257 C =18956.032398 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.091 4.091 3 C -0.121 4.121 4 C -0.117 4.117 5 C -0.089 4.089 6 C -0.064 4.064 7 C -0.071 4.071 8 H 0.104 0.896 9 C -0.141 4.141 10 C 0.516 3.484 11 O -0.526 6.526 12 N -0.729 5.729 13 C 0.121 3.879 14 C 0.045 3.955 15 N -0.515 5.515 16 C 0.017 3.983 17 C 0.044 3.956 18 C 0.452 3.548 19 O -0.557 6.557 20 N -0.591 5.591 21 C -0.305 4.305 22 H 0.120 0.880 23 C 0.042 3.958 24 N -0.881 5.881 25 Si 0.880 3.120 26 H -0.271 1.271 27 H -0.277 1.277 28 H -0.270 1.270 29 C -0.113 4.113 30 H 0.068 0.932 31 H 0.065 0.935 32 H 0.065 0.935 33 H 0.119 0.881 34 H 0.121 0.879 35 H 0.119 0.881 36 H 0.065 0.935 37 H 0.070 0.930 38 H 0.064 0.936 39 H 0.398 0.602 40 H 0.080 0.920 41 H 0.070 0.930 42 H 0.036 0.964 43 H 0.079 0.921 44 H 0.016 0.984 45 H 0.099 0.901 46 H 0.065 0.935 47 H 0.050 0.950 48 H 0.090 0.910 49 H 0.370 0.630 50 H 0.273 0.727 51 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.558 8.737 -21.829 34.728 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.091 4.091 3 C -0.139 4.139 4 C -0.135 4.135 5 C -0.107 4.107 6 C -0.064 4.064 7 C -0.092 4.092 8 H 0.122 0.878 9 C -0.199 4.199 10 C 0.301 3.699 11 O -0.401 6.401 12 N -0.382 5.382 13 C -0.002 4.002 14 C -0.084 4.084 15 N -0.239 5.239 16 C -0.131 4.131 17 C -0.087 4.087 18 C 0.238 3.762 19 O -0.439 6.439 20 N -0.230 5.230 21 C -0.434 4.434 22 H 0.138 0.862 23 C -0.161 4.161 24 N -0.521 5.521 25 Si 0.706 3.294 26 H -0.196 1.196 27 H -0.202 1.202 28 H -0.196 1.196 29 C -0.131 4.131 30 H 0.087 0.913 31 H 0.084 0.916 32 H 0.084 0.916 33 H 0.137 0.863 34 H 0.139 0.861 35 H 0.137 0.863 36 H 0.084 0.916 37 H 0.089 0.911 38 H 0.084 0.916 39 H 0.232 0.768 40 H 0.098 0.902 41 H 0.088 0.912 42 H 0.054 0.946 43 H 0.097 0.903 44 H 0.035 0.965 45 H 0.117 0.883 46 H 0.083 0.917 47 H 0.068 0.932 48 H 0.108 0.892 49 H 0.202 0.798 50 H 0.084 0.916 51 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -25.091 10.372 -20.536 34.042 hybrid contribution -0.172 -2.436 -1.163 2.705 sum -25.263 7.936 -21.699 34.235 Atomic orbital electron populations 1.20775 0.91255 1.02776 1.02161 1.19836 0.95953 0.93087 1.00271 1.21023 0.94299 0.97425 1.01115 1.21109 0.94256 0.98012 1.00151 1.20899 0.99851 0.91783 0.98140 1.19246 0.93187 0.93521 1.00485 1.20293 0.97332 0.97333 0.94272 0.87844 1.21807 0.99449 1.02820 0.95792 1.20436 0.80095 0.82017 0.87341 1.90759 1.65357 1.37450 1.46499 1.45931 1.45290 1.21027 1.25935 1.21338 0.93379 0.98400 0.87094 1.22255 0.95630 0.95795 0.94717 1.61432 1.18373 1.42509 1.01603 1.22645 0.96951 0.99251 0.94227 1.21900 0.94924 0.91982 0.99897 1.19608 0.84102 0.84668 0.87855 1.90537 1.74149 1.34103 1.45106 1.42202 1.28541 1.23409 1.28894 1.19432 1.05854 1.11410 1.06657 0.86245 1.25031 0.96011 0.97991 0.97087 1.69618 1.16535 1.35268 1.30687 0.86675 0.78449 0.82737 0.81516 1.19609 1.20203 1.19579 1.20850 0.93139 0.97637 1.01473 0.91300 0.91619 0.91588 0.86277 0.86071 0.86326 0.91617 0.91118 0.91648 0.76791 0.90202 0.91161 0.94554 0.90279 0.96535 0.88305 0.91673 0.93243 0.89190 0.79750 0.91614 0.86274 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.65 10.01 36.01 0.36 -0.28 16 2 C -0.09 -0.76 5.88 -104.62 -0.62 -1.37 16 3 C -0.12 -1.02 9.70 -39.58 -0.38 -1.41 16 4 C -0.12 -1.08 10.05 -39.58 -0.40 -1.47 16 5 C -0.09 -0.89 7.93 -39.58 -0.31 -1.21 16 6 C -0.06 -0.59 4.40 -104.63 -0.46 -1.05 16 7 C -0.07 -0.53 2.90 -92.92 -0.27 -0.80 16 8 H 0.10 0.56 7.88 -51.93 -0.41 0.15 16 9 C -0.14 -0.77 8.90 37.16 0.33 -0.43 16 10 C 0.52 5.45 7.02 -10.99 -0.08 5.37 16 11 O -0.53 -7.94 15.11 5.55 0.08 -7.86 16 12 N -0.73 -6.38 5.45 -60.29 -0.33 -6.71 16 13 C 0.12 1.38 5.60 -4.04 -0.02 1.35 16 14 C 0.04 0.49 5.07 -3.83 -0.02 0.47 16 15 N -0.51 -7.96 4.50 -244.37 -1.10 -9.06 16 16 C 0.02 0.26 8.96 60.06 0.54 0.80 16 17 C 0.04 0.72 5.45 -4.97 -0.03 0.69 16 18 C 0.45 10.11 7.48 -10.98 -0.08 10.03 16 19 O -0.56 -14.75 13.91 5.55 0.08 -14.67 16 20 N -0.59 -13.87 5.09 -10.96 -0.06 -13.93 16 21 C -0.30 -8.56 10.16 -14.94 -0.15 -8.71 16 22 H 0.12 3.84 7.39 -52.49 -0.39 3.46 16 23 C 0.04 1.14 5.50 -17.47 -0.10 1.04 16 24 N -0.88 -25.63 13.96 55.50 0.77 -24.86 16 25 Si 0.88 19.13 27.74 -169.99 -4.71 14.41 16 26 H -0.27 -5.77 7.11 56.52 0.40 -5.37 16 27 H -0.28 -6.05 7.11 56.52 0.40 -5.65 16 28 H -0.27 -5.32 6.52 56.52 0.37 -4.95 16 29 C -0.11 -0.97 9.33 -39.58 -0.37 -1.33 16 30 H 0.07 0.32 8.14 -51.93 -0.42 -0.10 16 31 H 0.06 0.34 8.09 -51.93 -0.42 -0.08 16 32 H 0.07 0.33 8.09 -51.93 -0.42 -0.09 16 33 H 0.12 0.77 8.06 -52.49 -0.42 0.35 16 34 H 0.12 0.90 8.06 -52.49 -0.42 0.48 16 35 H 0.12 1.20 7.52 -52.48 -0.39 0.81 16 36 H 0.06 0.25 7.56 -51.93 -0.39 -0.14 16 37 H 0.07 0.32 8.14 -51.93 -0.42 -0.10 16 38 H 0.06 0.42 7.39 -51.93 -0.38 0.03 16 39 H 0.40 2.21 7.89 -40.82 -0.32 1.89 16 40 H 0.08 1.08 8.14 -51.93 -0.42 0.65 16 41 H 0.07 0.89 6.55 -51.93 -0.34 0.55 16 42 H 0.04 0.35 8.12 -51.93 -0.42 -0.07 16 43 H 0.08 0.75 7.93 -51.93 -0.41 0.34 16 44 H 0.02 0.22 8.14 -51.93 -0.42 -0.20 16 45 H 0.10 1.91 5.82 -51.93 -0.30 1.60 16 46 H 0.06 0.93 6.47 -51.93 -0.34 0.60 16 47 H 0.05 0.70 8.12 -51.93 -0.42 0.28 16 48 H 0.09 1.24 7.93 -51.93 -0.41 0.83 16 49 H 0.37 7.57 5.76 -40.82 -0.24 7.34 16 50 H 0.27 7.34 8.31 -40.82 -0.34 7.00 16 51 H 0.12 0.78 7.95 -52.49 -0.42 0.36 16 LS Contribution 414.27 15.07 6.24 6.24 Total: -1.00 -35.58 414.27 -9.21 -44.79 By element: Atomic # 1 Polarization: 18.09 SS G_CDS: -8.13 Total: 9.96 kcal Atomic # 6 Polarization: 3.73 SS G_CDS: -2.06 Total: 1.68 kcal Atomic # 7 Polarization: -53.85 SS G_CDS: -0.71 Total: -54.56 kcal Atomic # 8 Polarization: -22.69 SS G_CDS: 0.16 Total: -22.53 kcal Atomic # 14 Polarization: 19.13 SS G_CDS: -4.71 Total: 14.41 kcal Total LS contribution 6.24 Total: 6.24 kcal Total: -35.58 -9.21 -44.79 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001690980536.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.265 kcal (2) G-P(sol) polarization free energy of solvation -35.584 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.319 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.209 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.793 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.528 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds