Wall clock time and date at job start Wed Apr 1 2020 04:16:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38382 * 119.84918 * 2 1 4 4 C 1.37940 * 120.14309 * 179.97438 * 3 2 1 5 5 C 1.39606 * 119.85111 * 0.02562 * 4 3 2 6 6 C 1.47841 * 120.14346 * 179.97438 * 5 4 3 7 7 O 1.21548 * 120.00150 * 173.75650 * 6 5 4 8 8 N 1.34775 * 119.99935 * 353.75450 * 6 5 4 9 9 C 1.46503 * 120.00236 * 180.02562 * 8 6 5 10 10 C 1.52996 * 109.47616 * 180.02562 * 9 8 6 11 11 H 1.09006 * 109.47243 * 305.00094 * 10 9 8 12 12 C 1.53001 * 109.47155 * 64.99662 * 10 9 8 13 13 C 1.52992 * 109.47320 * 185.00253 * 10 9 8 14 14 N 1.46899 * 109.47499 * 175.00149 * 13 10 9 15 15 C 1.46893 * 111.00363 * 179.97438 * 14 13 10 16 16 C 1.50698 * 109.47268 * 179.97438 * 15 14 13 17 17 O 1.21292 * 120.00301 * 359.97438 * 16 15 14 18 18 N 1.34784 * 120.00382 * 180.02562 * 16 15 14 19 19 C 1.37089 * 120.00060 * 180.02562 * 18 16 15 20 20 H 1.08004 * 120.00279 * 359.97438 * 19 18 16 21 21 C 1.38953 * 119.99868 * 179.97438 * 19 18 16 22 22 N 1.31413 * 120.00083 * 179.97438 * 21 19 18 23 23 Si 1.86800 * 119.99857 * 359.97438 * 21 19 18 24 24 H 1.48496 * 109.47215 * 90.00167 * 23 21 19 25 25 H 1.48503 * 109.46922 * 209.99653 * 23 21 19 26 26 H 1.48500 * 109.47108 * 329.99980 * 23 21 19 27 27 C 1.39552 * 119.70819 * 0.25516 * 5 4 3 28 28 C 1.50704 * 120.07128 * 179.74689 * 27 5 4 29 29 C 1.37979 * 119.85596 * 359.44827 * 27 5 4 30 30 H 1.09005 * 109.46756 * 90.00557 * 1 2 3 31 31 H 1.08998 * 109.47002 * 210.00261 * 1 2 3 32 32 H 1.08993 * 109.47295 * 330.00549 * 1 2 3 33 33 H 1.07993 * 119.93280 * 359.97438 * 3 2 1 34 34 H 1.07997 * 120.07722 * 179.97438 * 4 3 2 35 35 H 0.97001 * 120.00204 * 0.02562 * 8 6 5 36 36 H 1.08999 * 109.47188 * 59.99726 * 9 8 6 37 37 H 1.08998 * 109.47051 * 299.99965 * 9 8 6 38 38 H 1.09000 * 109.47317 * 180.02562 * 12 10 9 39 39 H 1.08998 * 109.47119 * 300.00387 * 12 10 9 40 40 H 1.08997 * 109.46775 * 60.00258 * 12 10 9 41 41 H 1.08999 * 109.47532 * 54.99553 * 13 10 9 42 42 H 1.09002 * 109.47081 * 294.99538 * 13 10 9 43 43 H 1.00908 * 110.99885 * 56.03708 * 14 13 10 44 44 H 1.08995 * 109.47531 * 299.99616 * 15 14 13 45 45 H 1.08996 * 109.47385 * 59.99933 * 15 14 13 46 46 H 0.96992 * 119.99562 * 359.97438 * 18 16 15 47 47 H 0.97000 * 120.00138 * 179.97438 * 22 21 19 48 48 H 1.08999 * 109.47065 * 83.40656 * 28 27 5 49 49 H 1.09002 * 109.47379 * 203.41018 * 28 27 5 50 50 H 1.09001 * 109.46834 * 323.40655 * 28 27 5 51 51 H 1.08002 * 119.93120 * 180.29816 * 29 27 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1958 1.2002 0.0000 4 6 3.5752 1.2073 0.0005 5 6 4.2762 0.0001 0.0005 6 6 5.7547 0.0001 0.0005 7 8 6.3624 -1.0463 0.1150 8 7 6.4285 1.1604 -0.1264 9 6 7.8935 1.1604 -0.1270 10 6 8.4035 2.5944 -0.2832 11 1 7.9685 3.0393 -1.1782 12 6 7.9992 3.4159 0.9427 13 6 9.9282 2.5826 -0.4090 14 7 10.4079 3.9447 -0.6784 15 6 11.8711 3.9721 -0.8051 16 6 12.3252 5.3823 -1.0811 17 8 11.5100 6.2766 -1.1646 18 7 13.6370 5.6498 -1.2362 19 6 14.0500 6.9328 -1.4867 20 1 13.3242 7.7292 -1.5603 21 6 15.4025 7.2087 -1.6461 22 7 15.7984 8.4384 -1.8868 23 14 16.6580 5.8314 -1.5182 24 1 16.8760 5.2341 -2.8602 25 1 17.9404 6.3768 -1.0050 26 1 16.1558 4.7886 -0.5879 27 6 3.5754 -1.2067 -0.0054 28 6 4.3240 -2.5147 -0.0112 29 6 2.1956 -1.1997 0.0003 30 1 -0.3633 -0.0001 -1.0277 31 1 -0.3633 -0.8900 0.5139 32 1 -0.3633 0.8900 0.5137 33 1 1.6522 2.1334 -0.0004 34 1 4.1116 2.1446 0.0001 35 1 5.9435 1.9955 -0.2175 36 1 8.2566 0.5530 -0.9561 37 1 8.2572 0.7463 0.8133 38 1 8.3621 4.4376 0.8312 39 1 6.9129 3.4242 1.0322 40 1 8.4341 2.9710 1.8376 41 1 10.2201 1.9258 -1.2285 42 1 10.3667 2.2203 0.5208 43 1 10.0949 4.5860 0.0350 44 1 12.3228 3.6196 0.1222 45 1 12.1769 3.3250 -1.6271 46 1 14.2889 4.9347 -1.1698 47 1 16.7426 8.6311 -1.9977 48 1 4.6064 -2.7762 1.0085 49 1 3.6861 -3.2966 -0.4234 50 1 5.2208 -2.4173 -0.6230 51 1 1.6520 -2.1330 0.0006 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001698773029.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:16:54 Heat of formation + Delta-G solvation = -55.990544 kcal Electronic energy + Delta-G solvation = -28811.559717 eV Core-core repulsion = 24710.285005 eV Total energy + Delta-G solvation = -4101.274712 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -40.78854 -39.05613 -38.53562 -37.33567 -35.12162 -33.95743 -33.76035 -32.99884 -31.89039 -31.61432 -28.30127 -27.61785 -27.51741 -26.54418 -24.77052 -23.26127 -22.94966 -21.56820 -20.83980 -20.24153 -19.37805 -18.42063 -18.00855 -16.80056 -16.23962 -15.90421 -15.67162 -15.46641 -15.35159 -15.31123 -14.94118 -14.68326 -14.37131 -14.18476 -13.90533 -13.58764 -13.53287 -13.41773 -13.28637 -13.11314 -12.91163 -12.80292 -12.68297 -12.34062 -12.22681 -12.12655 -12.03648 -11.97186 -11.75337 -11.47300 -11.24912 -11.18736 -11.03854 -10.96698 -10.59811 -9.98237 -9.91623 -9.57844 -9.42560 -9.26989 -8.98808 -8.60350 -8.20460 -8.15348 -6.31663 -3.83112 0.43333 0.91591 2.51948 2.82793 3.02292 3.06940 3.14989 3.40917 3.73403 4.06141 4.10595 4.23800 4.26781 4.40843 4.45229 4.64009 4.67425 4.77545 4.80512 4.85075 4.90809 5.08422 5.11656 5.16064 5.21331 5.29967 5.34376 5.35852 5.46506 5.48224 5.50883 5.52814 5.58023 5.62807 5.66720 5.77711 5.80225 5.80650 5.86875 5.92217 6.01258 6.06255 6.08017 6.16269 6.23603 6.46622 7.06769 7.17846 7.55290 7.58000 7.91293 8.13867 8.59240 8.94367 9.41926 9.82085 10.81440 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.028197 B = 0.001426 C = 0.001370 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 992.769476 B =19631.635043 C =20426.976340 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.056 4.056 3 C -0.137 4.137 4 C -0.077 4.077 5 C -0.147 4.147 6 C 0.557 3.443 7 O -0.533 6.533 8 N -0.723 5.723 9 C 0.126 3.874 10 C -0.102 4.102 11 H 0.090 0.910 12 C -0.153 4.153 13 C 0.066 3.934 14 N -0.668 5.668 15 C 0.048 3.952 16 C 0.450 3.550 17 O -0.565 6.565 18 N -0.590 5.590 19 C -0.306 4.306 20 H 0.120 0.880 21 C 0.042 3.958 22 N -0.881 5.881 23 Si 0.880 3.120 24 H -0.270 1.270 25 H -0.277 1.277 26 H -0.270 1.270 27 C -0.017 4.017 28 C -0.122 4.122 29 C -0.134 4.134 30 H 0.075 0.925 31 H 0.069 0.931 32 H 0.069 0.931 33 H 0.128 0.872 34 H 0.126 0.874 35 H 0.400 0.600 36 H 0.071 0.929 37 H 0.069 0.931 38 H 0.068 0.932 39 H 0.053 0.947 40 H 0.055 0.945 41 H 0.075 0.925 42 H 0.031 0.969 43 H 0.350 0.650 44 H 0.045 0.955 45 H 0.088 0.912 46 H 0.371 0.629 47 H 0.273 0.727 48 H 0.075 0.925 49 H 0.057 0.943 50 H 0.096 0.904 51 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.396 -21.388 5.838 35.243 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.057 4.057 3 C -0.155 4.155 4 C -0.095 4.095 5 C -0.150 4.150 6 C 0.345 3.655 7 O -0.411 6.411 8 N -0.375 5.375 9 C 0.002 3.998 10 C -0.122 4.122 11 H 0.108 0.892 12 C -0.210 4.210 13 C -0.064 4.064 14 N -0.302 5.302 15 C -0.085 4.085 16 C 0.235 3.765 17 O -0.447 6.447 18 N -0.230 5.230 19 C -0.434 4.434 20 H 0.137 0.863 21 C -0.161 4.161 22 N -0.521 5.521 23 Si 0.706 3.294 24 H -0.196 1.196 25 H -0.202 1.202 26 H -0.195 1.195 27 C -0.018 4.018 28 C -0.178 4.178 29 C -0.152 4.152 30 H 0.093 0.907 31 H 0.088 0.912 32 H 0.088 0.912 33 H 0.146 0.854 34 H 0.144 0.856 35 H 0.236 0.764 36 H 0.089 0.911 37 H 0.088 0.912 38 H 0.087 0.913 39 H 0.072 0.928 40 H 0.074 0.926 41 H 0.093 0.907 42 H 0.049 0.951 43 H 0.171 0.829 44 H 0.063 0.937 45 H 0.106 0.894 46 H 0.203 0.797 47 H 0.084 0.916 48 H 0.094 0.906 49 H 0.075 0.925 50 H 0.114 0.886 51 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -27.399 -21.392 5.148 35.140 hybrid contribution 1.252 -0.529 0.951 1.659 sum -26.146 -21.922 6.099 34.661 Atomic orbital electron populations 1.20877 0.90812 1.03170 1.02751 1.20148 0.96378 0.93078 0.96059 1.20972 0.93843 0.97897 1.02742 1.21289 0.94577 0.96865 0.96804 1.19768 0.92742 0.94020 1.08507 1.18253 0.87088 0.83655 0.76473 1.90729 1.70038 1.30818 1.49556 1.45942 1.07676 1.09289 1.74626 1.21393 0.78841 0.97008 1.02563 1.21371 0.96315 0.94216 1.00256 0.89200 1.21907 1.01072 1.00883 0.97172 1.21878 0.93234 0.91375 0.99883 1.60085 1.09651 1.06618 1.53819 1.21703 0.88762 0.97107 1.00959 1.19713 0.82901 0.89675 0.84175 1.90560 1.52406 1.47166 1.54603 1.42205 1.05976 1.09790 1.65011 1.19435 0.93616 0.84690 1.45708 0.86285 1.25036 0.97005 0.96535 0.97531 1.69622 1.16565 1.18224 1.47711 0.86669 0.81958 0.81876 0.78862 1.19579 1.20183 1.19534 1.20051 0.93365 0.94922 0.93506 1.21092 1.00845 0.92135 1.03706 1.20955 0.93175 0.97937 1.03178 0.90664 0.91232 0.91158 0.85372 0.85570 0.76426 0.91064 0.91240 0.91323 0.92786 0.92585 0.90699 0.95108 0.82894 0.93731 0.89411 0.79672 0.91610 0.90622 0.92450 0.88593 0.85408 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.47 10.01 36.01 0.36 -0.11 16 2 C -0.06 -0.36 5.89 -104.53 -0.62 -0.97 16 3 C -0.14 -0.87 9.68 -39.64 -0.38 -1.25 16 4 C -0.08 -0.54 9.53 -39.18 -0.37 -0.92 16 5 C -0.15 -1.35 5.87 -104.97 -0.62 -1.96 16 6 C 0.56 5.86 7.70 -12.33 -0.09 5.77 16 7 O -0.53 -7.07 13.35 5.32 0.07 -6.99 16 8 N -0.72 -6.13 5.23 -61.25 -0.32 -6.45 16 9 C 0.13 1.12 5.06 -4.04 -0.02 1.10 16 10 C -0.10 -0.93 2.63 -90.63 -0.24 -1.16 16 11 H 0.09 0.87 8.14 -51.93 -0.42 0.45 16 12 C -0.15 -1.31 8.84 37.16 0.33 -0.98 16 13 C 0.07 0.72 5.14 -3.83 -0.02 0.70 16 14 N -0.67 -9.91 6.12 -115.07 -0.70 -10.61 16 15 C 0.05 0.77 6.17 -4.98 -0.03 0.74 16 16 C 0.45 10.15 7.82 -10.98 -0.09 10.07 16 17 O -0.57 -15.09 15.78 5.55 0.09 -15.00 16 18 N -0.59 -14.04 5.09 -10.96 -0.06 -14.10 16 19 C -0.31 -8.65 10.16 -14.94 -0.15 -8.81 16 20 H 0.12 3.85 7.39 -52.48 -0.39 3.46 16 21 C 0.04 1.15 5.50 -17.47 -0.10 1.05 16 22 N -0.88 -25.72 13.96 55.50 0.77 -24.95 16 23 Si 0.88 19.35 27.74 -169.99 -4.71 14.63 16 24 H -0.27 -5.84 7.11 56.52 0.40 -5.44 16 25 H -0.28 -6.09 7.11 56.52 0.40 -5.69 16 26 H -0.27 -5.40 6.52 56.52 0.37 -5.03 16 27 C -0.02 -0.16 5.91 -104.23 -0.62 -0.77 16 28 C -0.12 -1.06 8.73 36.01 0.31 -0.74 16 29 C -0.13 -0.97 9.31 -39.64 -0.37 -1.33 16 30 H 0.07 0.25 8.14 -51.93 -0.42 -0.17 16 31 H 0.07 0.22 8.08 -51.93 -0.42 -0.20 16 32 H 0.07 0.22 8.08 -51.93 -0.42 -0.20 16 33 H 0.13 0.56 8.06 -52.49 -0.42 0.13 16 34 H 0.13 0.62 6.45 -52.49 -0.34 0.28 16 35 H 0.40 2.57 5.73 -40.82 -0.23 2.33 16 36 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 37 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 38 H 0.07 0.68 6.68 -51.93 -0.35 0.33 16 39 H 0.05 0.38 7.18 -51.93 -0.37 0.01 16 40 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 41 H 0.07 0.79 8.14 -51.93 -0.42 0.36 16 42 H 0.03 0.31 8.14 -51.93 -0.42 -0.11 16 43 H 0.35 5.36 6.69 -39.29 -0.26 5.09 16 44 H 0.04 0.64 8.14 -51.93 -0.42 0.22 16 45 H 0.09 1.28 8.14 -51.93 -0.42 0.86 16 46 H 0.37 7.73 5.76 -40.82 -0.24 7.49 16 47 H 0.27 7.36 8.31 -40.82 -0.34 7.02 16 48 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 49 H 0.06 0.38 8.04 -51.93 -0.42 -0.04 16 50 H 0.10 1.02 5.86 -51.93 -0.30 0.71 16 51 H 0.13 0.68 8.06 -52.49 -0.42 0.25 16 LS Contribution 413.74 15.07 6.24 6.24 Total: -1.00 -34.56 413.74 -9.32 -43.88 By element: Atomic # 1 Polarization: 20.92 SS G_CDS: -7.98 Total: 12.94 kcal Atomic # 6 Polarization: 3.13 SS G_CDS: -2.71 Total: 0.42 kcal Atomic # 7 Polarization: -55.80 SS G_CDS: -0.31 Total: -56.11 kcal Atomic # 8 Polarization: -22.16 SS G_CDS: 0.16 Total: -22.00 kcal Atomic # 14 Polarization: 19.35 SS G_CDS: -4.71 Total: 14.63 kcal Total LS contribution 6.24 Total: 6.24 kcal Total: -34.56 -9.32 -43.88 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001698773029.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.115 kcal (2) G-P(sol) polarization free energy of solvation -34.558 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.673 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.318 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.876 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.991 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds