Wall clock time and date at job start Wed Apr 1 2020 04:16:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38382 * 119.84918 * 2 1 4 4 C 1.37940 * 120.14309 * 179.97438 * 3 2 1 5 5 C 1.39606 * 119.85111 * 0.02562 * 4 3 2 6 6 C 1.47841 * 120.14346 * 179.97438 * 5 4 3 7 7 O 1.21548 * 120.00150 * 173.75650 * 6 5 4 8 8 N 1.34775 * 119.99935 * 353.75450 * 6 5 4 9 9 C 1.46503 * 120.00236 * 180.02562 * 8 6 5 10 10 C 1.52996 * 109.47616 * 180.02562 * 9 8 6 11 11 H 1.09006 * 109.47243 * 305.00094 * 10 9 8 12 12 C 1.53001 * 109.47155 * 64.99662 * 10 9 8 13 13 C 1.52992 * 109.47320 * 185.00253 * 10 9 8 14 14 N 1.46899 * 109.47499 * 175.00149 * 13 10 9 15 15 C 1.46893 * 111.00363 * 179.97438 * 14 13 10 16 16 C 1.50698 * 109.47268 * 179.97438 * 15 14 13 17 17 O 1.21292 * 120.00301 * 359.97438 * 16 15 14 18 18 N 1.34784 * 120.00382 * 180.02562 * 16 15 14 19 19 C 1.37089 * 120.00060 * 180.02562 * 18 16 15 20 20 H 1.08004 * 120.00279 * 359.97438 * 19 18 16 21 21 C 1.38953 * 119.99868 * 179.97438 * 19 18 16 22 22 N 1.31413 * 120.00083 * 179.97438 * 21 19 18 23 23 Si 1.86800 * 119.99857 * 359.97438 * 21 19 18 24 24 H 1.48496 * 109.47215 * 90.00167 * 23 21 19 25 25 H 1.48503 * 109.46922 * 209.99653 * 23 21 19 26 26 H 1.48500 * 109.47108 * 329.99980 * 23 21 19 27 27 C 1.39552 * 119.70819 * 0.25516 * 5 4 3 28 28 C 1.50704 * 120.07128 * 179.74689 * 27 5 4 29 29 C 1.37979 * 119.85596 * 359.44827 * 27 5 4 30 30 H 1.09005 * 109.46756 * 90.00557 * 1 2 3 31 31 H 1.08998 * 109.47002 * 210.00261 * 1 2 3 32 32 H 1.08993 * 109.47295 * 330.00549 * 1 2 3 33 33 H 1.07993 * 119.93280 * 359.97438 * 3 2 1 34 34 H 1.07997 * 120.07722 * 179.97438 * 4 3 2 35 35 H 0.97001 * 120.00204 * 0.02562 * 8 6 5 36 36 H 1.08999 * 109.47188 * 59.99726 * 9 8 6 37 37 H 1.08998 * 109.47051 * 299.99965 * 9 8 6 38 38 H 1.09000 * 109.47317 * 180.02562 * 12 10 9 39 39 H 1.08998 * 109.47119 * 300.00387 * 12 10 9 40 40 H 1.08997 * 109.46775 * 60.00258 * 12 10 9 41 41 H 1.08999 * 109.47532 * 54.99553 * 13 10 9 42 42 H 1.09002 * 109.47081 * 294.99538 * 13 10 9 43 43 H 1.00908 * 110.99885 * 56.03708 * 14 13 10 44 44 H 1.08995 * 109.47531 * 299.99616 * 15 14 13 45 45 H 1.08996 * 109.47385 * 59.99933 * 15 14 13 46 46 H 0.96992 * 119.99562 * 359.97438 * 18 16 15 47 47 H 0.97000 * 120.00138 * 179.97438 * 22 21 19 48 48 H 1.08999 * 109.47065 * 83.40656 * 28 27 5 49 49 H 1.09002 * 109.47379 * 203.41018 * 28 27 5 50 50 H 1.09001 * 109.46834 * 323.40655 * 28 27 5 51 51 H 1.08002 * 119.93120 * 180.29816 * 29 27 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1958 1.2002 0.0000 4 6 3.5752 1.2073 0.0005 5 6 4.2762 0.0001 0.0005 6 6 5.7547 0.0001 0.0005 7 8 6.3624 -1.0463 0.1150 8 7 6.4285 1.1604 -0.1264 9 6 7.8935 1.1604 -0.1270 10 6 8.4035 2.5944 -0.2832 11 1 7.9685 3.0393 -1.1782 12 6 7.9992 3.4159 0.9427 13 6 9.9282 2.5826 -0.4090 14 7 10.4079 3.9447 -0.6784 15 6 11.8711 3.9721 -0.8051 16 6 12.3252 5.3823 -1.0811 17 8 11.5100 6.2766 -1.1646 18 7 13.6370 5.6498 -1.2362 19 6 14.0500 6.9328 -1.4867 20 1 13.3242 7.7292 -1.5603 21 6 15.4025 7.2087 -1.6461 22 7 15.7984 8.4384 -1.8868 23 14 16.6580 5.8314 -1.5182 24 1 16.8760 5.2341 -2.8602 25 1 17.9404 6.3768 -1.0050 26 1 16.1558 4.7886 -0.5879 27 6 3.5754 -1.2067 -0.0054 28 6 4.3240 -2.5147 -0.0112 29 6 2.1956 -1.1997 0.0003 30 1 -0.3633 -0.0001 -1.0277 31 1 -0.3633 -0.8900 0.5139 32 1 -0.3633 0.8900 0.5137 33 1 1.6522 2.1334 -0.0004 34 1 4.1116 2.1446 0.0001 35 1 5.9435 1.9955 -0.2175 36 1 8.2566 0.5530 -0.9561 37 1 8.2572 0.7463 0.8133 38 1 8.3621 4.4376 0.8312 39 1 6.9129 3.4242 1.0322 40 1 8.4341 2.9710 1.8376 41 1 10.2201 1.9258 -1.2285 42 1 10.3667 2.2203 0.5208 43 1 10.0949 4.5860 0.0350 44 1 12.3228 3.6196 0.1222 45 1 12.1769 3.3250 -1.6271 46 1 14.2889 4.9347 -1.1698 47 1 16.7426 8.6311 -1.9977 48 1 4.6064 -2.7762 1.0085 49 1 3.6861 -3.2966 -0.4234 50 1 5.2208 -2.4173 -0.6230 51 1 1.6520 -2.1330 0.0006 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001698773029.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:16:53 Heat of formation + Delta-G solvation = -80.973435 kcal Electronic energy + Delta-G solvation = -28812.643056 eV Core-core repulsion = 24710.285005 eV Total energy + Delta-G solvation = -4102.358052 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.45840 -40.33348 -39.63801 -38.31132 -36.26475 -35.76571 -34.29400 -33.89103 -33.67176 -32.54274 -29.10297 -28.63154 -28.13519 -27.37898 -26.26597 -24.42192 -23.58471 -22.21318 -21.57993 -21.31662 -20.91218 -20.24139 -18.74347 -17.91769 -17.33708 -17.13215 -16.74265 -16.54555 -16.10876 -16.05195 -15.94422 -15.70593 -15.54261 -15.06888 -14.98638 -14.67656 -14.48679 -14.33226 -14.25835 -14.08401 -13.97437 -13.78710 -13.51745 -13.43245 -13.23538 -13.11563 -12.82432 -12.77544 -12.62974 -12.51361 -12.41142 -12.10349 -11.97153 -11.93371 -11.84372 -11.75182 -11.51380 -10.70385 -10.43511 -10.24756 -10.17228 -9.79843 -9.55302 -9.32251 -8.41344 -6.02254 -0.14983 0.38645 1.30555 1.35971 1.44670 1.83569 1.95508 2.10761 2.23112 2.75704 2.81755 3.15123 3.42492 3.67232 3.77794 3.87296 3.90635 3.93238 3.97778 4.00571 4.17922 4.35638 4.39208 4.43499 4.52244 4.55336 4.58687 4.63400 4.72017 4.73335 4.78816 4.80265 4.82136 4.86451 4.95009 5.00056 5.03068 5.17467 5.23157 5.28316 5.31388 5.35700 5.47569 5.52696 5.58360 5.59569 5.90475 5.96134 6.04768 6.39987 6.49850 6.59804 6.87984 7.17923 7.39777 7.96152 8.76249 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.028197 B = 0.001426 C = 0.001370 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 992.769476 B =19631.635043 C =20426.976340 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.057 4.057 3 C -0.141 4.141 4 C -0.078 4.078 5 C -0.170 4.170 6 C 0.553 3.447 7 O -0.568 6.568 8 N -0.714 5.714 9 C 0.133 3.867 10 C -0.090 4.090 11 H 0.084 0.916 12 C -0.151 4.151 13 C 0.067 3.933 14 N -0.685 5.685 15 C 0.061 3.939 16 C 0.448 3.552 17 O -0.614 6.614 18 N -0.591 5.591 19 C -0.330 4.330 20 H 0.056 0.944 21 C -0.014 4.014 22 N -0.934 5.934 23 Si 0.964 3.036 24 H -0.258 1.258 25 H -0.275 1.275 26 H -0.231 1.231 27 C -0.037 4.037 28 C -0.116 4.116 29 C -0.141 4.141 30 H 0.083 0.917 31 H 0.077 0.923 32 H 0.080 0.920 33 H 0.151 0.849 34 H 0.145 0.855 35 H 0.410 0.590 36 H 0.065 0.935 37 H 0.066 0.934 38 H 0.053 0.947 39 H 0.069 0.931 40 H 0.058 0.942 41 H 0.082 0.918 42 H 0.045 0.955 43 H 0.345 0.655 44 H 0.076 0.924 45 H 0.114 0.886 46 H 0.390 0.610 47 H 0.279 0.721 48 H 0.067 0.933 49 H 0.074 0.926 50 H 0.073 0.927 51 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.131 -23.977 6.464 37.524 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.057 4.057 3 C -0.159 4.159 4 C -0.096 4.096 5 C -0.173 4.173 6 C 0.342 3.658 7 O -0.449 6.449 8 N -0.366 5.366 9 C 0.009 3.991 10 C -0.109 4.109 11 H 0.103 0.897 12 C -0.208 4.208 13 C -0.062 4.062 14 N -0.319 5.319 15 C -0.072 4.072 16 C 0.236 3.764 17 O -0.499 6.499 18 N -0.233 5.233 19 C -0.459 4.459 20 H 0.074 0.926 21 C -0.212 4.212 22 N -0.575 5.575 23 Si 0.784 3.216 24 H -0.182 1.182 25 H -0.200 1.200 26 H -0.155 1.155 27 C -0.038 4.038 28 C -0.172 4.172 29 C -0.159 4.159 30 H 0.102 0.898 31 H 0.096 0.904 32 H 0.099 0.901 33 H 0.169 0.831 34 H 0.163 0.837 35 H 0.248 0.752 36 H 0.083 0.917 37 H 0.084 0.916 38 H 0.072 0.928 39 H 0.088 0.912 40 H 0.077 0.923 41 H 0.101 0.899 42 H 0.063 0.937 43 H 0.165 0.835 44 H 0.094 0.906 45 H 0.132 0.868 46 H 0.225 0.775 47 H 0.089 0.911 48 H 0.085 0.915 49 H 0.093 0.907 50 H 0.092 0.908 51 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -28.162 -23.988 5.778 37.442 hybrid contribution 1.303 0.376 0.742 1.546 sum -26.859 -23.612 6.520 36.351 Atomic orbital electron populations 1.20936 0.88899 1.04134 1.03536 1.20515 0.97835 0.92766 0.94610 1.21319 0.93683 0.98966 1.01932 1.21529 0.95171 0.96846 0.96081 1.19807 0.91977 0.95098 1.10374 1.18564 0.87837 0.83498 0.75899 1.90711 1.70827 1.32035 1.51363 1.45852 1.07539 1.09362 1.73837 1.21268 0.79068 0.96622 1.02145 1.21221 0.95278 0.94185 1.00259 0.89727 1.21887 1.02145 0.99830 0.96974 1.21955 0.94158 0.89227 1.00850 1.60085 1.08823 1.08674 1.54314 1.21634 0.89876 0.92304 1.03367 1.21002 0.81941 0.91995 0.81474 1.90538 1.53664 1.49675 1.55981 1.42035 1.07078 1.08509 1.65645 1.19021 0.93285 0.85598 1.48039 0.92632 1.26101 0.99154 0.99980 0.95988 1.69803 1.17578 1.21406 1.48672 0.85371 0.77662 0.78316 0.80211 1.18215 1.20024 1.15455 1.20211 0.94300 0.94791 0.94527 1.20982 1.00319 0.93085 1.02820 1.21179 0.92561 0.99202 1.02967 0.89818 0.90443 0.90100 0.83108 0.83692 0.75181 0.91663 0.91561 0.92760 0.91234 0.92297 0.89917 0.93712 0.83486 0.90587 0.86804 0.77463 0.91146 0.91480 0.90690 0.90842 0.83811 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.61 10.01 71.24 0.71 0.10 16 2 C -0.06 -0.61 5.89 -19.81 -0.12 -0.73 16 3 C -0.14 -1.49 9.68 22.23 0.22 -1.27 16 4 C -0.08 -0.99 9.53 22.53 0.21 -0.77 16 5 C -0.17 -3.04 5.87 -20.09 -0.12 -3.16 16 6 C 0.55 11.63 7.70 86.79 0.67 12.30 16 7 O -0.57 -15.51 13.35 -3.87 -0.05 -15.56 16 8 N -0.71 -11.44 5.23 -465.99 -2.44 -13.88 16 9 C 0.13 2.22 5.06 86.38 0.44 2.66 16 10 C -0.09 -1.49 2.63 -10.80 -0.03 -1.52 16 11 H 0.08 1.52 8.14 -2.38 -0.02 1.50 16 12 C -0.15 -2.36 8.84 71.98 0.64 -1.73 16 13 C 0.07 1.30 5.14 86.30 0.44 1.75 16 14 N -0.69 -19.15 6.12 -517.98 -3.17 -22.32 16 15 C 0.06 1.81 6.17 85.56 0.53 2.33 16 16 C 0.45 20.08 7.82 87.66 0.69 20.77 16 17 O -0.61 -33.85 15.78 -3.07 -0.05 -33.89 16 18 N -0.59 -27.79 5.09 -306.98 -1.56 -29.35 16 19 C -0.33 -19.37 10.16 84.04 0.85 -18.51 16 20 H 0.06 3.88 7.39 -2.91 -0.02 3.86 16 21 C -0.01 -0.75 5.50 84.93 0.47 -0.28 16 22 N -0.93 -56.31 13.96 21.66 0.30 -56.00 16 23 Si 0.96 38.71 27.74 68.60 1.90 40.61 16 24 H -0.26 -9.84 7.11 99.48 0.71 -9.14 16 25 H -0.28 -10.97 7.11 99.48 0.71 -10.26 16 26 H -0.23 -7.78 6.52 99.48 0.65 -7.14 16 27 C -0.04 -0.66 5.91 -19.61 -0.12 -0.77 16 28 C -0.12 -2.08 8.73 71.24 0.62 -1.45 16 29 C -0.14 -1.85 9.31 22.23 0.21 -1.65 16 30 H 0.08 0.33 8.14 -2.38 -0.02 0.31 16 31 H 0.08 0.29 8.08 -2.39 -0.02 0.27 16 32 H 0.08 0.27 8.08 -2.39 -0.02 0.25 16 33 H 0.15 0.85 8.06 -2.91 -0.02 0.83 16 34 H 0.15 1.13 6.45 -2.91 -0.02 1.11 16 35 H 0.41 4.66 5.73 -92.71 -0.53 4.13 16 36 H 0.07 1.19 8.14 -2.39 -0.02 1.17 16 37 H 0.07 1.18 8.14 -2.39 -0.02 1.16 16 38 H 0.05 1.03 6.68 -2.39 -0.02 1.01 16 39 H 0.07 0.85 7.18 -2.39 -0.02 0.84 16 40 H 0.06 0.90 8.14 -2.39 -0.02 0.88 16 41 H 0.08 1.50 8.14 -2.39 -0.02 1.48 16 42 H 0.04 0.77 8.14 -2.39 -0.02 0.75 16 43 H 0.35 10.27 6.69 -89.69 -0.60 9.67 16 44 H 0.08 1.85 8.14 -2.39 -0.02 1.84 16 45 H 0.11 2.88 8.14 -2.39 -0.02 2.86 16 46 H 0.39 15.13 5.76 -92.71 -0.53 14.59 16 47 H 0.28 15.36 8.31 -92.71 -0.77 14.59 16 48 H 0.07 1.26 8.14 -2.39 -0.02 1.24 16 49 H 0.07 0.99 8.04 -2.39 -0.02 0.97 16 50 H 0.07 1.66 5.86 -2.39 -0.01 1.64 16 51 H 0.14 1.29 8.06 -2.91 -0.02 1.27 16 Total: -1.00 -81.14 413.74 0.48 -80.66 By element: Atomic # 1 Polarization: 42.45 SS G_CDS: -0.76 Total: 41.69 kcal Atomic # 6 Polarization: 1.75 SS G_CDS: 6.31 Total: 8.06 kcal Atomic # 7 Polarization: -114.69 SS G_CDS: -6.87 Total: -121.56 kcal Atomic # 8 Polarization: -49.36 SS G_CDS: -0.10 Total: -49.46 kcal Atomic # 14 Polarization: 38.71 SS G_CDS: 1.90 Total: 40.61 kcal Total: -81.14 0.48 -80.66 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001698773029.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.318 kcal (2) G-P(sol) polarization free energy of solvation -81.140 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.458 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.485 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.656 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.973 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds