Wall clock time and date at job start Wed Apr 1 2020 04:17:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38228 * 120.00201 * 2 1 4 4 C 1.38238 * 120.00120 * 180.23979 * 3 2 1 5 5 C 1.38234 * 119.99675 * 359.47825 * 4 3 2 6 6 C 1.50703 * 120.00257 * 180.27927 * 5 4 3 7 7 C 1.50706 * 109.46982 * 90.00130 * 6 5 4 8 8 O 1.21279 * 119.99882 * 0.02562 * 7 6 5 9 9 N 1.34774 * 120.00014 * 180.02562 * 7 6 5 10 10 C 1.46497 * 119.99847 * 0.02562 * 9 7 6 11 11 C 1.46499 * 119.99738 * 180.02562 * 9 7 6 12 12 H 1.09001 * 109.47593 * 359.97438 * 11 9 7 13 13 C 1.53000 * 109.47028 * 240.00047 * 11 9 7 14 14 C 1.53004 * 109.47089 * 120.00252 * 11 9 7 15 15 N 1.46900 * 109.46780 * 304.99691 * 14 11 9 16 16 C 1.46906 * 111.00003 * 179.97438 * 15 14 11 17 17 C 1.50692 * 109.46978 * 179.97438 * 16 15 14 18 18 O 1.21288 * 120.00467 * 0.02562 * 17 16 15 19 19 N 1.34779 * 119.99865 * 180.02562 * 17 16 15 20 20 C 1.37091 * 120.00431 * 180.02562 * 19 17 16 21 21 H 1.08005 * 120.00010 * 359.97438 * 20 19 17 22 22 C 1.38951 * 120.00179 * 180.02562 * 20 19 17 23 23 N 1.31421 * 119.99727 * 179.97438 * 22 20 19 24 24 Si 1.86795 * 120.00233 * 359.97438 * 22 20 19 25 25 H 1.48497 * 109.47185 * 90.00356 * 24 22 20 26 26 H 1.48500 * 109.47417 * 210.00643 * 24 22 20 27 27 H 1.48504 * 109.46827 * 330.00430 * 24 22 20 28 28 C 1.38234 * 120.00240 * 0.26327 * 5 4 3 29 29 C 1.38234 * 119.99739 * 179.71804 * 2 1 3 30 30 H 1.09008 * 109.47424 * 270.28049 * 1 2 3 31 31 H 1.09002 * 109.47258 * 30.27549 * 1 2 3 32 32 H 1.08998 * 109.47359 * 150.27651 * 1 2 3 33 33 H 1.08004 * 120.00256 * 359.97438 * 3 2 1 34 34 H 1.08002 * 120.00519 * 179.76445 * 4 3 2 35 35 H 1.08988 * 109.47584 * 210.00457 * 6 5 4 36 36 H 1.09000 * 109.47013 * 330.00974 * 6 5 4 37 37 H 1.09006 * 109.47074 * 90.00267 * 10 9 7 38 38 H 1.09007 * 109.46855 * 209.99921 * 10 9 7 39 39 H 1.08994 * 109.47792 * 329.99953 * 10 9 7 40 40 H 1.09003 * 109.47448 * 60.00002 * 13 11 9 41 41 H 1.09002 * 109.47040 * 180.02562 * 13 11 9 42 42 H 1.08999 * 109.47403 * 299.99991 * 13 11 9 43 43 H 1.09001 * 109.47294 * 64.99675 * 14 11 9 44 44 H 1.08996 * 109.47333 * 184.99872 * 14 11 9 45 45 H 1.00893 * 111.00100 * 303.95406 * 15 14 11 46 46 H 1.08994 * 109.47291 * 300.00511 * 16 15 14 47 47 H 1.09004 * 109.46478 * 59.99865 * 16 15 14 48 48 H 0.97005 * 119.99893 * 0.02562 * 19 17 16 49 49 H 0.96998 * 119.99587 * 179.97438 * 23 22 20 50 50 H 1.07997 * 120.00460 * 180.02562 * 28 5 4 51 51 H 1.08001 * 120.00310 * 0.02562 * 29 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1971 0.0000 4 6 3.5805 1.1971 -0.0050 5 6 4.2717 -0.0001 0.0009 6 6 5.7787 -0.0002 0.0018 7 6 6.2801 0.0062 1.4230 8 8 5.4914 0.0100 2.3443 9 7 7.6050 0.0077 1.6700 10 6 8.5577 0.0037 0.5571 11 6 8.0924 0.0134 3.0516 12 1 7.2443 0.0162 3.7362 13 6 8.9418 1.2639 3.2876 14 6 8.9429 -1.2345 3.2975 15 7 8.1644 -2.4326 2.9559 16 6 8.9511 -3.6530 3.1795 17 6 8.1214 -4.8583 2.8197 18 8 6.9866 -4.7150 2.4162 19 7 8.6403 -6.0958 2.9462 20 6 7.8857 -7.1924 2.6184 21 1 6.8752 -7.0648 2.2591 22 6 8.4206 -8.4681 2.7493 23 7 7.6970 -9.5194 2.4355 24 14 10.1681 -8.6890 3.3713 25 1 10.1549 -8.8123 4.8511 26 1 10.7534 -9.9178 2.7774 27 1 10.9852 -7.5124 2.9799 28 6 3.5805 -1.1972 0.0063 29 6 2.1981 -1.1972 0.0059 30 1 -0.3634 0.0050 1.0277 31 1 -0.3634 0.8875 -0.5181 32 1 -0.3634 -0.8924 -0.5095 33 1 1.6582 2.1325 -0.0004 34 1 4.1206 2.1323 -0.0089 35 1 6.1423 -0.8924 -0.5078 36 1 6.1424 0.8874 -0.5158 37 1 8.7936 1.0304 0.2771 38 1 9.4703 -0.5086 0.8620 39 1 8.1182 -0.5137 -0.2956 40 1 8.3360 2.1530 3.1124 41 1 9.3048 1.2679 4.3154 42 1 9.7900 1.2616 2.6031 43 1 9.8373 -1.1930 2.6759 44 1 9.2318 -1.2762 4.3476 45 1 7.2984 -2.4606 3.4727 46 1 9.8454 -3.6279 2.5569 47 1 9.2405 -3.7115 4.2288 48 1 9.5478 -6.2104 3.2692 49 1 8.0705 -10.4099 2.5266 50 1 4.1204 -2.1325 0.0113 51 1 1.6581 -2.1325 0.0101 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001698833033.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:17:02 Heat of formation + Delta-G solvation = -43.385505 kcal Electronic energy + Delta-G solvation = -30413.894971 eV Core-core repulsion = 26313.166855 eV Total energy + Delta-G solvation = -4100.728117 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -40.24911 -39.09849 -38.41918 -36.80183 -34.70662 -33.90489 -33.73475 -31.89087 -31.60446 -30.84663 -29.45160 -27.74569 -26.90965 -25.57779 -24.92690 -23.10958 -22.66855 -21.80289 -20.58320 -19.41155 -19.01660 -18.27679 -17.29969 -16.53382 -16.04296 -15.94908 -15.72157 -15.22894 -15.14659 -14.93533 -14.79824 -14.26967 -14.06204 -13.81349 -13.64544 -13.41452 -13.31788 -13.21073 -13.08302 -12.87585 -12.70048 -12.47631 -12.42369 -12.31108 -12.20265 -12.03354 -11.83899 -11.80403 -11.65244 -11.52056 -11.16109 -11.08666 -10.91881 -10.88304 -10.59740 -9.96975 -9.68279 -9.56339 -8.82366 -8.65370 -8.49879 -8.43972 -8.18249 -8.10580 -6.30266 -3.81521 1.35462 1.50543 2.79050 3.02063 3.03222 3.06388 3.14588 3.75848 3.81873 4.07524 4.11395 4.62334 4.68993 4.78669 4.85730 4.90079 4.96143 4.98544 5.04661 5.07377 5.11738 5.18917 5.23682 5.35513 5.38516 5.40545 5.44969 5.48204 5.51104 5.51903 5.58191 5.63297 5.71593 5.74754 5.78840 5.81268 5.86050 5.93352 5.98897 6.12882 6.14859 6.45728 6.56612 6.64758 6.67946 7.07881 7.11427 7.45440 7.58325 7.60179 8.15690 8.33256 8.61074 8.96237 9.43478 9.84479 10.83012 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.009375 B = 0.002691 C = 0.002178 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2985.804150 B =10404.123476 C =12852.325687 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.091 4.091 3 C -0.124 4.124 4 C -0.104 4.104 5 C -0.069 4.069 6 C -0.099 4.099 7 C 0.525 3.475 8 O -0.534 6.534 9 N -0.596 5.596 10 C 0.083 3.917 11 C 0.138 3.862 12 H 0.099 0.901 13 C -0.157 4.157 14 C 0.047 3.953 15 N -0.663 5.663 16 C 0.049 3.951 17 C 0.450 3.550 18 O -0.561 6.561 19 N -0.592 5.592 20 C -0.304 4.304 21 H 0.119 0.881 22 C 0.041 3.959 23 N -0.882 5.882 24 Si 0.880 3.120 25 H -0.271 1.271 26 H -0.277 1.277 27 H -0.270 1.270 28 C -0.094 4.094 29 C -0.118 4.118 30 H 0.068 0.932 31 H 0.063 0.937 32 H 0.065 0.935 33 H 0.117 0.883 34 H 0.116 0.884 35 H 0.105 0.895 36 H 0.096 0.904 37 H 0.049 0.951 38 H 0.072 0.928 39 H 0.072 0.928 40 H 0.060 0.940 41 H 0.066 0.934 42 H 0.059 0.941 43 H 0.073 0.927 44 H 0.037 0.963 45 H 0.353 0.647 46 H 0.085 0.915 47 H 0.042 0.958 48 H 0.370 0.630 49 H 0.273 0.727 50 H 0.126 0.874 51 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.744 24.525 -4.088 24.875 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.091 4.091 3 C -0.142 4.142 4 C -0.123 4.123 5 C -0.070 4.070 6 C -0.139 4.139 7 C 0.313 3.687 8 O -0.410 6.410 9 N -0.329 5.329 10 C -0.060 4.060 11 C 0.034 3.966 12 H 0.117 0.883 13 C -0.216 4.216 14 C -0.083 4.083 15 N -0.295 5.295 16 C -0.084 4.084 17 C 0.236 3.764 18 O -0.442 6.442 19 N -0.232 5.232 20 C -0.432 4.432 21 H 0.137 0.863 22 C -0.162 4.162 23 N -0.522 5.522 24 Si 0.706 3.294 25 H -0.197 1.197 26 H -0.202 1.202 27 H -0.195 1.195 28 C -0.112 4.112 29 C -0.136 4.136 30 H 0.087 0.913 31 H 0.082 0.918 32 H 0.084 0.916 33 H 0.135 0.865 34 H 0.134 0.866 35 H 0.123 0.877 36 H 0.115 0.885 37 H 0.068 0.932 38 H 0.091 0.909 39 H 0.090 0.910 40 H 0.079 0.921 41 H 0.085 0.915 42 H 0.078 0.922 43 H 0.091 0.909 44 H 0.055 0.945 45 H 0.173 0.827 46 H 0.103 0.897 47 H 0.060 0.940 48 H 0.202 0.798 49 H 0.084 0.916 50 H 0.144 0.856 51 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -0.332 24.407 -4.561 24.832 hybrid contribution 1.721 -0.610 1.443 2.327 sum 1.388 23.797 -3.118 24.041 Atomic orbital electron populations 1.20775 0.91477 1.02469 1.02236 1.19893 0.95895 0.93306 1.00042 1.20891 0.94020 0.97284 1.02017 1.20879 0.94176 0.97096 1.00106 1.19268 0.93630 0.93526 1.00542 1.20680 0.93228 1.04867 0.95131 1.20380 0.81683 0.75466 0.91130 1.90699 1.54719 1.49282 1.46288 1.47535 1.05550 1.73572 1.06277 1.21689 0.94042 1.00694 0.89599 1.21049 0.97740 0.93676 0.84154 0.88260 1.22076 0.99978 0.97389 1.02120 1.22361 0.96904 0.90316 0.98750 1.60002 1.06888 0.99537 1.63108 1.21699 0.96995 0.90371 0.99333 1.19716 0.88493 0.83570 0.84645 1.90579 1.19068 1.85386 1.49212 1.42212 1.14632 1.05983 1.60369 1.19426 0.99861 0.82596 1.41347 0.86325 1.25039 0.98238 0.95169 0.97776 1.69628 1.36768 0.98308 1.47528 0.86668 0.84447 0.78540 0.79697 1.19694 1.20182 1.19530 1.21107 0.94302 0.97834 0.97979 1.21025 0.94185 0.97536 1.00848 0.91291 0.91832 0.91608 0.86460 0.86616 0.87657 0.88543 0.93238 0.90918 0.90961 0.92131 0.91498 0.92211 0.90852 0.94504 0.82745 0.89699 0.93958 0.79766 0.91643 0.85636 0.86040 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.01 10.01 36.00 0.36 -0.65 16 2 C -0.09 -1.08 5.88 -104.63 -0.62 -1.70 16 3 C -0.12 -1.42 9.70 -39.58 -0.38 -1.80 16 4 C -0.10 -1.25 9.70 -39.58 -0.38 -1.63 16 5 C -0.07 -0.91 4.37 -104.62 -0.46 -1.37 16 6 C -0.10 -1.12 4.38 -29.03 -0.13 -1.25 16 7 C 0.53 7.32 7.67 -10.98 -0.08 7.23 16 8 O -0.53 -9.59 15.36 5.56 0.09 -9.50 16 9 N -0.60 -6.81 2.48 -173.93 -0.43 -7.24 16 10 C 0.08 0.70 9.30 59.85 0.56 1.25 16 11 C 0.14 1.52 2.88 -67.93 -0.20 1.32 16 12 H 0.10 1.34 6.90 -51.93 -0.36 0.98 16 13 C -0.16 -1.25 9.19 37.16 0.34 -0.91 16 14 C 0.05 0.53 4.93 -3.82 -0.02 0.52 16 15 N -0.66 -10.40 5.85 -115.06 -0.67 -11.08 16 16 C 0.05 0.81 6.17 -4.98 -0.03 0.78 16 17 C 0.45 10.32 7.82 -10.99 -0.09 10.24 16 18 O -0.56 -15.32 15.78 5.55 0.09 -15.23 16 19 N -0.59 -14.22 5.09 -10.97 -0.06 -14.28 16 20 C -0.30 -8.67 10.16 -14.94 -0.15 -8.82 16 21 H 0.12 3.89 7.39 -52.48 -0.39 3.50 16 22 C 0.04 1.12 5.50 -17.46 -0.10 1.02 16 23 N -0.88 -25.98 13.96 55.50 0.77 -25.20 16 24 Si 0.88 19.46 27.74 -169.99 -4.71 14.75 16 25 H -0.27 -5.89 7.11 56.52 0.40 -5.49 16 26 H -0.28 -6.12 7.11 56.52 0.40 -5.72 16 27 H -0.27 -5.42 6.52 56.52 0.37 -5.05 16 28 C -0.09 -1.34 9.70 -39.58 -0.38 -1.73 16 29 C -0.12 -1.55 9.70 -39.58 -0.38 -1.94 16 30 H 0.07 0.59 8.14 -51.92 -0.42 0.17 16 31 H 0.06 0.47 8.09 -51.93 -0.42 0.05 16 32 H 0.06 0.54 8.09 -51.93 -0.42 0.12 16 33 H 0.12 1.06 8.06 -52.48 -0.42 0.64 16 34 H 0.12 1.14 8.06 -52.49 -0.42 0.72 16 35 H 0.11 1.14 7.35 -51.94 -0.38 0.76 16 36 H 0.10 0.80 8.05 -51.93 -0.42 0.38 16 37 H 0.05 0.31 8.14 -51.93 -0.42 -0.11 16 38 H 0.07 0.59 6.53 -51.92 -0.34 0.25 16 39 H 0.07 0.58 6.44 -51.93 -0.33 0.25 16 40 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 41 H 0.07 0.47 8.14 -51.93 -0.42 0.04 16 42 H 0.06 0.41 7.67 -51.93 -0.40 0.01 16 43 H 0.07 0.74 6.88 -51.93 -0.36 0.38 16 44 H 0.04 0.38 8.14 -51.93 -0.42 -0.04 16 45 H 0.35 6.33 8.43 -39.30 -0.33 6.00 16 46 H 0.08 1.24 8.14 -51.93 -0.42 0.82 16 47 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16 48 H 0.37 7.78 5.76 -40.82 -0.24 7.55 16 49 H 0.27 7.41 8.31 -40.82 -0.34 7.07 16 50 H 0.13 1.86 8.06 -52.49 -0.42 1.44 16 51 H 0.12 1.43 8.06 -52.49 -0.42 1.01 16 LS Contribution 419.17 15.07 6.32 6.32 Total: -1.00 -35.97 419.17 -8.95 -44.92 By element: Atomic # 1 Polarization: 24.18 SS G_CDS: -8.20 Total: 15.98 kcal Atomic # 6 Polarization: 2.71 SS G_CDS: -2.14 Total: 0.57 kcal Atomic # 7 Polarization: -57.41 SS G_CDS: -0.39 Total: -57.80 kcal Atomic # 8 Polarization: -24.90 SS G_CDS: 0.17 Total: -24.73 kcal Atomic # 14 Polarization: 19.46 SS G_CDS: -4.71 Total: 14.75 kcal Total LS contribution 6.32 Total: 6.32 kcal Total: -35.97 -8.95 -44.92 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001698833033.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.535 kcal (2) G-P(sol) polarization free energy of solvation -35.968 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.433 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.952 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.920 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.386 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds