Wall clock time and date at job start Wed Apr 1 2020 04:17:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38228 * 120.00201 * 2 1 4 4 C 1.38238 * 120.00120 * 180.23979 * 3 2 1 5 5 C 1.38234 * 119.99675 * 359.47825 * 4 3 2 6 6 C 1.50703 * 120.00257 * 180.27927 * 5 4 3 7 7 C 1.50706 * 109.46982 * 90.00130 * 6 5 4 8 8 O 1.21279 * 119.99882 * 0.02562 * 7 6 5 9 9 N 1.34774 * 120.00014 * 180.02562 * 7 6 5 10 10 C 1.46497 * 119.99847 * 0.02562 * 9 7 6 11 11 C 1.46499 * 119.99738 * 180.02562 * 9 7 6 12 12 H 1.09001 * 109.47593 * 359.97438 * 11 9 7 13 13 C 1.53000 * 109.47028 * 240.00047 * 11 9 7 14 14 C 1.53004 * 109.47089 * 120.00252 * 11 9 7 15 15 N 1.46900 * 109.46780 * 304.99691 * 14 11 9 16 16 C 1.46906 * 111.00003 * 179.97438 * 15 14 11 17 17 C 1.50692 * 109.46978 * 179.97438 * 16 15 14 18 18 O 1.21288 * 120.00467 * 0.02562 * 17 16 15 19 19 N 1.34779 * 119.99865 * 180.02562 * 17 16 15 20 20 C 1.37091 * 120.00431 * 180.02562 * 19 17 16 21 21 H 1.08005 * 120.00010 * 359.97438 * 20 19 17 22 22 C 1.38951 * 120.00179 * 180.02562 * 20 19 17 23 23 N 1.31421 * 119.99727 * 179.97438 * 22 20 19 24 24 Si 1.86795 * 120.00233 * 359.97438 * 22 20 19 25 25 H 1.48497 * 109.47185 * 90.00356 * 24 22 20 26 26 H 1.48500 * 109.47417 * 210.00643 * 24 22 20 27 27 H 1.48504 * 109.46827 * 330.00430 * 24 22 20 28 28 C 1.38234 * 120.00240 * 0.26327 * 5 4 3 29 29 C 1.38234 * 119.99739 * 179.71804 * 2 1 3 30 30 H 1.09008 * 109.47424 * 270.28049 * 1 2 3 31 31 H 1.09002 * 109.47258 * 30.27549 * 1 2 3 32 32 H 1.08998 * 109.47359 * 150.27651 * 1 2 3 33 33 H 1.08004 * 120.00256 * 359.97438 * 3 2 1 34 34 H 1.08002 * 120.00519 * 179.76445 * 4 3 2 35 35 H 1.08988 * 109.47584 * 210.00457 * 6 5 4 36 36 H 1.09000 * 109.47013 * 330.00974 * 6 5 4 37 37 H 1.09006 * 109.47074 * 90.00267 * 10 9 7 38 38 H 1.09007 * 109.46855 * 209.99921 * 10 9 7 39 39 H 1.08994 * 109.47792 * 329.99953 * 10 9 7 40 40 H 1.09003 * 109.47448 * 60.00002 * 13 11 9 41 41 H 1.09002 * 109.47040 * 180.02562 * 13 11 9 42 42 H 1.08999 * 109.47403 * 299.99991 * 13 11 9 43 43 H 1.09001 * 109.47294 * 64.99675 * 14 11 9 44 44 H 1.08996 * 109.47333 * 184.99872 * 14 11 9 45 45 H 1.00893 * 111.00100 * 303.95406 * 15 14 11 46 46 H 1.08994 * 109.47291 * 300.00511 * 16 15 14 47 47 H 1.09004 * 109.46478 * 59.99865 * 16 15 14 48 48 H 0.97005 * 119.99893 * 0.02562 * 19 17 16 49 49 H 0.96998 * 119.99587 * 179.97438 * 23 22 20 50 50 H 1.07997 * 120.00460 * 180.02562 * 28 5 4 51 51 H 1.08001 * 120.00310 * 0.02562 * 29 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1971 0.0000 4 6 3.5805 1.1971 -0.0050 5 6 4.2717 -0.0001 0.0009 6 6 5.7787 -0.0002 0.0018 7 6 6.2801 0.0062 1.4230 8 8 5.4914 0.0100 2.3443 9 7 7.6050 0.0077 1.6700 10 6 8.5577 0.0037 0.5571 11 6 8.0924 0.0134 3.0516 12 1 7.2443 0.0162 3.7362 13 6 8.9418 1.2639 3.2876 14 6 8.9429 -1.2345 3.2975 15 7 8.1644 -2.4326 2.9559 16 6 8.9511 -3.6530 3.1795 17 6 8.1214 -4.8583 2.8197 18 8 6.9866 -4.7150 2.4162 19 7 8.6403 -6.0958 2.9462 20 6 7.8857 -7.1924 2.6184 21 1 6.8752 -7.0648 2.2591 22 6 8.4206 -8.4681 2.7493 23 7 7.6970 -9.5194 2.4355 24 14 10.1681 -8.6890 3.3713 25 1 10.1549 -8.8123 4.8511 26 1 10.7534 -9.9178 2.7774 27 1 10.9852 -7.5124 2.9799 28 6 3.5805 -1.1972 0.0063 29 6 2.1981 -1.1972 0.0059 30 1 -0.3634 0.0050 1.0277 31 1 -0.3634 0.8875 -0.5181 32 1 -0.3634 -0.8924 -0.5095 33 1 1.6582 2.1325 -0.0004 34 1 4.1206 2.1323 -0.0089 35 1 6.1423 -0.8924 -0.5078 36 1 6.1424 0.8874 -0.5158 37 1 8.7936 1.0304 0.2771 38 1 9.4703 -0.5086 0.8620 39 1 8.1182 -0.5137 -0.2956 40 1 8.3360 2.1530 3.1124 41 1 9.3048 1.2679 4.3154 42 1 9.7900 1.2616 2.6031 43 1 9.8373 -1.1930 2.6759 44 1 9.2318 -1.2762 4.3476 45 1 7.2984 -2.4606 3.4727 46 1 9.8454 -3.6279 2.5569 47 1 9.2405 -3.7115 4.2288 48 1 9.5478 -6.2104 3.2692 49 1 8.0705 -10.4099 2.5266 50 1 4.1204 -2.1325 0.0113 51 1 1.6581 -2.1325 0.0101 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001698833033.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:17:01 Heat of formation + Delta-G solvation = -69.178509 kcal Electronic energy + Delta-G solvation = -30415.013440 eV Core-core repulsion = 26313.166855 eV Total energy + Delta-G solvation = -4101.846585 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -41.23226 -40.33581 -39.95902 -37.89397 -36.18758 -35.56131 -34.73907 -33.76732 -32.75076 -31.81292 -30.30071 -29.09676 -27.66879 -26.67020 -26.32060 -24.47105 -23.63957 -22.72812 -21.53876 -21.27838 -20.35589 -19.85597 -18.28096 -17.89731 -17.28600 -17.02458 -16.89508 -16.68478 -16.31521 -16.05743 -15.92508 -15.62025 -15.35274 -15.00906 -14.81284 -14.61765 -14.37756 -14.32208 -14.28139 -14.05868 -13.91414 -13.71353 -13.32190 -13.20380 -13.15725 -13.09492 -12.86374 -12.78578 -12.69608 -12.69004 -12.45345 -12.43156 -11.98762 -11.98746 -11.82256 -11.75155 -11.53303 -10.76698 -10.46611 -10.26913 -9.81691 -9.48662 -9.38790 -9.30721 -8.42995 -6.04278 0.39427 0.51028 1.28321 1.34371 1.43468 1.76492 1.94391 2.16482 2.21723 2.71142 2.86684 3.13251 3.38259 3.70282 3.79863 3.89375 4.03188 4.09100 4.12069 4.13444 4.23357 4.26471 4.36496 4.37873 4.44929 4.52713 4.55147 4.60981 4.63206 4.65951 4.75194 4.81574 4.81748 4.84333 4.86401 4.96424 5.06390 5.14194 5.18509 5.28370 5.30245 5.49814 5.50950 5.68604 5.70129 5.72390 5.88718 6.04969 6.13821 6.27224 6.53367 6.58194 6.86531 7.33714 7.37841 7.95657 8.75005 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.009375 B = 0.002691 C = 0.002178 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2985.804150 B =10404.123476 C =12852.325687 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.099 4.099 3 C -0.127 4.127 4 C -0.110 4.110 5 C -0.082 4.082 6 C -0.094 4.094 7 C 0.515 3.485 8 O -0.587 6.587 9 N -0.593 5.593 10 C 0.075 3.925 11 C 0.134 3.866 12 H 0.066 0.934 13 C -0.145 4.145 14 C 0.051 3.949 15 N -0.680 5.680 16 C 0.065 3.935 17 C 0.446 3.554 18 O -0.615 6.615 19 N -0.591 5.591 20 C -0.329 4.329 21 H 0.051 0.949 22 C -0.017 4.017 23 N -0.936 5.936 24 Si 0.968 3.032 25 H -0.258 1.258 26 H -0.274 1.274 27 H -0.229 1.229 28 C -0.125 4.125 29 C -0.138 4.138 30 H 0.072 0.928 31 H 0.083 0.917 32 H 0.069 0.931 33 H 0.147 0.853 34 H 0.140 0.860 35 H 0.104 0.896 36 H 0.133 0.867 37 H 0.079 0.921 38 H 0.081 0.919 39 H 0.071 0.929 40 H 0.055 0.945 41 H 0.079 0.921 42 H 0.080 0.920 43 H 0.098 0.902 44 H 0.055 0.945 45 H 0.334 0.666 46 H 0.119 0.881 47 H 0.074 0.926 48 H 0.390 0.610 49 H 0.279 0.721 50 H 0.102 0.898 51 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.747 27.339 -3.687 27.992 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.099 4.099 3 C -0.144 4.144 4 C -0.128 4.128 5 C -0.083 4.083 6 C -0.133 4.133 7 C 0.304 3.696 8 O -0.467 6.467 9 N -0.324 5.324 10 C -0.067 4.067 11 C 0.030 3.970 12 H 0.084 0.916 13 C -0.204 4.204 14 C -0.078 4.078 15 N -0.312 5.312 16 C -0.068 4.068 17 C 0.234 3.766 18 O -0.500 6.500 19 N -0.233 5.233 20 C -0.458 4.458 21 H 0.069 0.931 22 C -0.215 4.215 23 N -0.576 5.576 24 Si 0.787 3.213 25 H -0.182 1.182 26 H -0.199 1.199 27 H -0.152 1.152 28 C -0.143 4.143 29 C -0.156 4.156 30 H 0.091 0.909 31 H 0.102 0.898 32 H 0.088 0.912 33 H 0.164 0.836 34 H 0.158 0.842 35 H 0.122 0.878 36 H 0.150 0.850 37 H 0.098 0.902 38 H 0.100 0.900 39 H 0.090 0.910 40 H 0.074 0.926 41 H 0.098 0.902 42 H 0.099 0.901 43 H 0.117 0.883 44 H 0.073 0.927 45 H 0.151 0.849 46 H 0.137 0.863 47 H 0.092 0.908 48 H 0.226 0.774 49 H 0.089 0.911 50 H 0.120 0.880 51 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges 3.738 27.255 -4.177 27.825 hybrid contribution 0.351 -1.458 1.283 1.974 sum 4.089 25.797 -2.894 26.279 Atomic orbital electron populations 1.20819 0.89314 1.03748 1.02830 1.20261 0.97592 0.92867 0.99202 1.21306 0.94152 0.98247 1.00731 1.21219 0.94757 0.97459 0.99353 1.19517 0.94798 0.93493 1.00462 1.20705 0.92183 1.06427 0.93986 1.20834 0.82309 0.74918 0.91498 1.90668 1.56225 1.52017 1.47834 1.47675 1.05263 1.72061 1.07420 1.21951 0.93405 1.02788 0.88514 1.21113 0.97096 0.95351 0.83392 0.91617 1.21987 0.99782 0.95098 1.03506 1.22480 0.96884 0.88118 1.00335 1.60030 1.06764 1.00813 1.63571 1.21630 0.96234 0.87235 1.01668 1.21070 0.88334 0.84946 0.82213 1.90566 1.21987 1.86392 1.51009 1.42021 1.15162 1.05210 1.60867 1.18980 0.98324 0.85176 1.43355 0.93092 1.26165 1.04552 0.93743 0.97064 1.69818 1.39920 0.99254 1.48652 0.85331 0.76651 0.79951 0.79351 1.18237 1.19910 1.15183 1.21135 0.95108 0.97774 1.00267 1.21207 0.94025 0.98650 1.01711 0.90910 0.89766 0.91163 0.83566 0.84217 0.87782 0.84957 0.90221 0.90043 0.90991 0.92634 0.90199 0.90127 0.88349 0.92742 0.84889 0.86309 0.90817 0.77425 0.91120 0.87973 0.85923 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.90 10.01 71.24 0.71 -1.19 16 2 C -0.10 -2.39 5.88 -19.87 -0.12 -2.50 16 3 C -0.13 -2.80 9.70 22.27 0.22 -2.58 16 4 C -0.11 -2.58 9.70 22.27 0.22 -2.37 16 5 C -0.08 -2.26 4.37 -19.87 -0.09 -2.35 16 6 C -0.09 -2.14 4.38 29.10 0.13 -2.01 16 7 C 0.52 14.66 7.67 87.66 0.67 15.33 16 8 O -0.59 -22.36 15.36 -3.03 -0.05 -22.40 16 9 N -0.59 -12.86 2.48 -822.58 -2.04 -14.91 16 10 C 0.08 1.05 9.30 127.77 1.19 2.24 16 11 C 0.13 2.77 2.88 44.99 0.13 2.90 16 12 H 0.07 1.82 6.90 -2.39 -0.02 1.80 16 13 C -0.15 -1.86 9.19 71.98 0.66 -1.20 16 14 C 0.05 1.01 4.93 86.30 0.43 1.43 16 15 N -0.68 -20.64 5.85 -517.93 -3.03 -23.67 16 16 C 0.06 1.97 6.17 85.55 0.53 2.49 16 17 C 0.45 20.65 7.82 87.65 0.69 21.34 16 18 O -0.62 -35.60 15.78 -3.05 -0.05 -35.65 16 19 N -0.59 -28.30 5.09 -306.99 -1.56 -29.86 16 20 C -0.33 -19.69 10.16 84.04 0.85 -18.83 16 21 H 0.05 3.66 7.39 -2.91 -0.02 3.64 16 22 C -0.02 -0.95 5.50 84.93 0.47 -0.48 16 23 N -0.94 -57.31 13.96 21.66 0.30 -57.00 16 24 Si 0.97 38.97 27.74 68.60 1.90 40.87 16 25 H -0.26 -9.86 7.11 99.48 0.71 -9.15 16 26 H -0.27 -10.93 7.11 99.48 0.71 -10.22 16 27 H -0.23 -7.64 6.52 99.48 0.65 -6.99 16 28 C -0.12 -3.95 9.70 22.27 0.22 -3.73 16 29 C -0.14 -3.96 9.70 22.27 0.22 -3.75 16 30 H 0.07 1.20 8.14 -2.38 -0.02 1.19 16 31 H 0.08 1.09 8.09 -2.39 -0.02 1.07 16 32 H 0.07 1.13 8.09 -2.39 -0.02 1.11 16 33 H 0.15 2.30 8.06 -2.91 -0.02 2.28 16 34 H 0.14 2.50 8.06 -2.91 -0.02 2.48 16 35 H 0.10 2.36 7.35 -2.39 -0.02 2.34 16 36 H 0.13 1.95 8.05 -2.39 -0.02 1.93 16 37 H 0.08 0.67 8.14 -2.38 -0.02 0.65 16 38 H 0.08 1.01 6.53 -2.38 -0.02 1.00 16 39 H 0.07 1.02 6.44 -2.39 -0.02 1.01 16 40 H 0.05 0.79 8.14 -2.39 -0.02 0.77 16 41 H 0.08 0.84 8.14 -2.39 -0.02 0.82 16 42 H 0.08 0.72 7.67 -2.39 -0.02 0.70 16 43 H 0.10 1.49 6.88 -2.39 -0.02 1.47 16 44 H 0.05 0.92 8.14 -2.39 -0.02 0.91 16 45 H 0.33 12.34 8.43 -89.70 -0.76 11.58 16 46 H 0.12 2.89 8.14 -2.39 -0.02 2.87 16 47 H 0.07 1.85 8.14 -2.38 -0.02 1.83 16 48 H 0.39 15.29 5.76 -92.70 -0.53 14.75 16 49 H 0.28 15.58 8.31 -92.71 -0.77 14.81 16 50 H 0.10 3.54 8.06 -2.91 -0.02 3.52 16 51 H 0.12 3.28 8.06 -2.91 -0.02 3.25 16 Total: -1.00 -88.65 419.17 2.18 -86.47 By element: Atomic # 1 Polarization: 51.81 SS G_CDS: -0.41 Total: 51.41 kcal Atomic # 6 Polarization: -2.37 SS G_CDS: 7.11 Total: 4.74 kcal Atomic # 7 Polarization: -119.10 SS G_CDS: -6.33 Total: -125.43 kcal Atomic # 8 Polarization: -57.96 SS G_CDS: -0.09 Total: -58.05 kcal Atomic # 14 Polarization: 38.97 SS G_CDS: 1.90 Total: 40.87 kcal Total: -88.65 2.18 -86.47 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001698833033.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.292 kcal (2) G-P(sol) polarization free energy of solvation -88.650 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.358 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.180 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.470 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.179 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds