Wall clock time and date at job start Wed Apr 1 2020 04:22:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38371 * 119.92743 * 2 1 4 4 C 1.38339 * 120.29315 * 179.97438 * 3 2 1 5 5 C 1.37977 * 120.14348 * 0.02562 * 4 3 2 6 6 C 1.39552 * 119.85092 * 359.97438 * 5 4 3 7 7 C 1.47852 * 120.14171 * 179.97438 * 6 5 4 8 8 O 1.21546 * 120.00073 * 173.80759 * 7 6 5 9 9 N 1.34774 * 120.00211 * 353.80222 * 7 6 5 10 10 C 1.46498 * 120.00286 * 180.02562 * 9 7 6 11 11 H 1.08995 * 109.47009 * 325.00050 * 10 9 7 12 12 C 1.52996 * 109.47232 * 85.00079 * 10 9 7 13 13 C 1.53001 * 109.46939 * 205.00029 * 10 9 7 14 14 N 1.46899 * 109.47445 * 55.00324 * 13 10 9 15 15 C 1.46891 * 111.00149 * 66.04042 * 14 13 10 16 16 C 1.46898 * 111.00294 * 189.99714 * 14 13 10 17 17 C 1.50697 * 109.47346 * 169.99512 * 16 14 13 18 18 O 1.21298 * 119.99901 * 0.02562 * 17 16 14 19 19 N 1.34779 * 120.00261 * 180.02562 * 17 16 14 20 20 C 1.37092 * 120.00169 * 179.97438 * 19 17 16 21 21 H 1.08003 * 120.00317 * 0.02562 * 20 19 17 22 22 C 1.38953 * 120.00066 * 179.97438 * 20 19 17 23 23 N 1.31409 * 119.99778 * 359.97438 * 22 20 19 24 24 Si 1.86801 * 119.99826 * 180.02562 * 22 20 19 25 25 H 1.48505 * 109.47163 * 60.00075 * 24 22 20 26 26 H 1.48500 * 109.46785 * 179.97438 * 24 22 20 27 27 H 1.48491 * 109.47278 * 300.00003 * 24 22 20 28 28 C 1.37931 * 119.92442 * 180.25521 * 2 1 3 29 29 C 1.50704 * 120.07880 * 0.02562 * 28 2 1 30 30 H 1.08999 * 109.47617 * 89.99783 * 1 2 3 31 31 H 1.09001 * 109.47346 * 210.00071 * 1 2 3 32 32 H 1.08998 * 109.47331 * 329.99634 * 1 2 3 33 33 H 1.08005 * 119.85791 * 359.97438 * 3 2 1 34 34 H 1.08007 * 119.92772 * 179.97438 * 4 3 2 35 35 H 1.08004 * 120.07368 * 180.02562 * 5 4 3 36 36 H 0.97009 * 119.99534 * 0.02562 * 9 7 6 37 37 H 1.09002 * 109.47221 * 300.00046 * 12 10 9 38 38 H 1.09003 * 109.46939 * 59.99752 * 12 10 9 39 39 H 1.08996 * 109.47549 * 180.02562 * 12 10 9 40 40 H 1.09007 * 109.46621 * 175.00019 * 13 10 9 41 41 H 1.08996 * 109.47245 * 294.99541 * 13 10 9 42 42 H 1.09000 * 109.47742 * 60.00506 * 15 14 13 43 43 H 1.09007 * 109.47517 * 180.02562 * 15 14 13 44 44 H 1.09002 * 109.47648 * 300.00518 * 15 14 13 45 45 H 1.09000 * 109.47063 * 289.99978 * 16 14 13 46 46 H 1.09008 * 109.46816 * 49.99546 * 16 14 13 47 47 H 0.96998 * 119.99592 * 0.02562 * 19 17 16 48 48 H 0.97003 * 119.99808 * 179.97438 * 23 22 20 49 49 H 1.09002 * 109.47097 * 263.69086 * 29 28 2 50 50 H 1.08997 * 109.46643 * 23.68947 * 29 28 2 51 51 H 1.08998 * 109.47295 * 143.69482 * 29 28 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1973 1.1992 0.0000 4 6 3.5807 1.2080 0.0005 5 6 4.2812 0.0193 0.0005 6 6 3.5910 -1.1936 0.0005 7 6 4.3352 -2.4712 0.0000 8 8 3.7368 -3.5231 0.1135 9 7 5.6769 -2.4695 -0.1266 10 6 6.4142 -3.7355 -0.1277 11 1 5.9292 -4.4390 0.5489 12 6 6.4283 -4.3162 -1.5431 13 6 7.8511 -3.4892 0.3369 14 7 7.8351 -2.8219 1.6454 15 6 7.2798 -3.7047 2.6798 16 6 9.1785 -2.3570 2.0158 17 6 9.0861 -1.4711 3.2314 18 8 8.0073 -1.2492 3.7395 19 7 10.2022 -0.9254 3.7539 20 6 10.1181 -0.1190 4.8594 21 1 9.1576 0.0786 5.3119 22 6 11.2689 0.4432 5.3984 23 7 12.4377 0.2016 4.8488 24 14 11.1543 1.5413 6.9052 25 1 10.5674 0.7743 8.0333 26 1 12.5124 2.0107 7.2799 27 1 10.2921 2.7113 6.6007 28 6 2.1951 -1.1954 -0.0053 29 6 1.4416 -2.5006 -0.0117 30 1 -0.3634 0.0000 -1.0276 31 1 -0.3634 -0.8900 0.5138 32 1 -0.3634 0.8899 0.5139 33 1 1.6538 2.1325 -0.0004 34 1 4.1136 2.1475 0.0001 35 1 5.3612 0.0275 0.0014 36 1 6.1545 -1.6300 -0.2169 37 1 5.4047 -4.4916 -1.8741 38 1 6.9134 -3.6126 -2.2197 39 1 6.9765 -5.2583 -1.5439 40 1 8.3739 -4.4420 0.4212 41 1 8.3637 -2.8564 -0.3875 42 1 7.8892 -4.6054 2.7544 43 1 7.2792 -3.1858 3.6385 44 1 6.2586 -3.9781 2.4144 45 1 9.8114 -3.2159 2.2393 46 1 9.6092 -1.7940 1.1877 47 1 11.0648 -1.1026 3.3473 48 1 13.2410 0.5943 5.2248 49 1 1.3574 -2.8765 1.0080 50 1 0.4452 -2.3427 -0.4243 51 1 1.9774 -3.2264 -0.6234 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001699473156.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:22:23 Heat of formation + Delta-G solvation = -44.269328 kcal Electronic energy + Delta-G solvation = -30774.374968 eV Core-core repulsion = 26673.608526 eV Total energy + Delta-G solvation = -4100.766442 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.54 seconds Orbital eigenvalues (eV) -40.50681 -39.02120 -38.39226 -36.91909 -34.82388 -33.85200 -33.48711 -32.28843 -31.25678 -30.85684 -28.00309 -27.66982 -26.90774 -26.53364 -24.84493 -23.87581 -22.51103 -21.07322 -20.67472 -20.07324 -19.15361 -17.85328 -17.49644 -16.47021 -16.15592 -15.72567 -15.53899 -15.35676 -15.02870 -14.75202 -14.67543 -14.47954 -14.02707 -13.94387 -13.56673 -13.49342 -13.33890 -13.09674 -12.87153 -12.84692 -12.63003 -12.44383 -12.15894 -12.01900 -11.98884 -11.81745 -11.76898 -11.71690 -11.50722 -11.35930 -11.23481 -10.98476 -10.91604 -10.70325 -10.44961 -10.22173 -9.51763 -9.47476 -9.09629 -8.80172 -8.64504 -8.46185 -7.99004 -7.87688 -6.42631 -3.83353 0.83078 1.25884 2.91112 3.19171 3.22086 3.24949 3.29342 3.78246 3.89419 3.94932 4.23197 4.61941 4.65160 4.75275 4.78988 4.90694 5.03767 5.09360 5.12678 5.15027 5.21357 5.26475 5.39101 5.43036 5.47115 5.51699 5.53645 5.60907 5.64630 5.70716 5.73336 5.77846 5.84312 5.89282 5.94573 5.97266 5.98434 6.08925 6.18372 6.26275 6.27092 6.35406 6.51132 6.57848 6.63115 6.83244 7.23643 7.34791 7.54191 7.63802 8.05400 8.32719 8.61166 9.17476 9.53694 10.05808 10.75059 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.010597 B = 0.002652 C = 0.002248 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2641.586512 B =10555.136562 C =12451.592157 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.104 4.104 3 C -0.093 4.093 4 C -0.131 4.131 5 C -0.079 4.079 6 C -0.134 4.134 7 C 0.562 3.438 8 O -0.543 6.543 9 N -0.700 5.700 10 C 0.148 3.852 11 H 0.089 0.911 12 C -0.161 4.161 13 C 0.042 3.958 14 N -0.515 5.515 15 C 0.022 3.978 16 C 0.045 3.955 17 C 0.444 3.556 18 O -0.576 6.576 19 N -0.565 5.565 20 C -0.298 4.298 21 H 0.102 0.898 22 C 0.022 3.978 23 N -0.903 5.903 24 Si 0.930 3.070 25 H -0.274 1.274 26 H -0.285 1.285 27 H -0.273 1.273 28 C -0.026 4.026 29 C -0.121 4.121 30 H 0.069 0.931 31 H 0.070 0.930 32 H 0.066 0.934 33 H 0.124 0.876 34 H 0.128 0.872 35 H 0.129 0.871 36 H 0.404 0.596 37 H 0.062 0.938 38 H 0.057 0.943 39 H 0.064 0.936 40 H 0.047 0.953 41 H 0.079 0.921 42 H 0.014 0.986 43 H 0.095 0.905 44 H 0.060 0.940 45 H 0.047 0.953 46 H 0.087 0.913 47 H 0.391 0.609 48 H 0.272 0.728 49 H 0.074 0.926 50 H 0.057 0.943 51 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.046 -3.735 -15.222 21.727 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.104 4.104 3 C -0.112 4.112 4 C -0.149 4.149 5 C -0.098 4.098 6 C -0.137 4.137 7 C 0.350 3.650 8 O -0.422 6.422 9 N -0.351 5.351 10 C 0.043 3.957 11 H 0.107 0.893 12 C -0.220 4.220 13 C -0.087 4.087 14 N -0.238 5.238 15 C -0.126 4.126 16 C -0.087 4.087 17 C 0.229 3.771 18 O -0.460 6.460 19 N -0.201 5.201 20 C -0.428 4.428 21 H 0.120 0.880 22 C -0.179 4.179 23 N -0.544 5.544 24 Si 0.757 3.243 25 H -0.199 1.199 26 H -0.210 1.210 27 H -0.199 1.199 28 C -0.027 4.027 29 C -0.177 4.177 30 H 0.087 0.913 31 H 0.089 0.911 32 H 0.085 0.915 33 H 0.142 0.858 34 H 0.146 0.854 35 H 0.147 0.853 36 H 0.240 0.760 37 H 0.081 0.919 38 H 0.076 0.924 39 H 0.083 0.917 40 H 0.065 0.935 41 H 0.097 0.903 42 H 0.032 0.968 43 H 0.114 0.886 44 H 0.079 0.921 45 H 0.065 0.935 46 H 0.105 0.895 47 H 0.225 0.775 48 H 0.082 0.918 49 H 0.092 0.908 50 H 0.075 0.925 51 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -16.271 -3.871 -14.761 22.308 hybrid contribution 1.634 0.331 0.611 1.775 sum -14.638 -3.540 -14.150 20.664 Atomic orbital electron populations 1.20806 0.90985 1.02967 1.02252 1.19733 0.96221 0.92388 1.02070 1.21202 0.94340 0.97460 0.98152 1.21079 0.94191 0.98183 1.01421 1.21358 1.00087 0.91726 0.96632 1.19786 0.93627 0.93173 1.07092 1.18183 0.82117 0.88619 0.76067 1.90683 1.67979 1.33055 1.50522 1.45728 1.06160 1.09876 1.73343 1.20940 0.91567 0.86283 0.96930 0.89340 1.22152 1.02643 1.00921 0.96289 1.22509 0.95477 0.98355 0.92385 1.61567 1.21678 1.39080 1.01522 1.22555 0.98479 0.93984 0.97599 1.21882 0.89693 0.98486 0.98591 1.19730 0.85199 0.85398 0.86786 1.90501 1.27737 1.64212 1.63503 1.41861 1.07674 1.43378 1.27231 1.19638 0.95288 1.23422 1.04444 0.88007 1.25248 0.94669 0.98539 0.99455 1.69603 0.98174 1.45140 1.41487 0.85934 0.77141 0.80088 0.81165 1.19936 1.20992 1.19885 1.19861 0.92072 0.95597 0.95155 1.21096 0.98686 0.94309 1.03597 0.91261 0.91094 0.91544 0.85825 0.85405 0.85323 0.76041 0.91876 0.92361 0.91667 0.93490 0.90298 0.96751 0.88621 0.92096 0.93475 0.89478 0.77541 0.91844 0.90789 0.92464 0.88748 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.90 9.18 36.01 0.33 -0.57 16 2 C -0.10 -1.12 5.87 -104.69 -0.61 -1.74 16 3 C -0.09 -0.95 9.69 -39.50 -0.38 -1.33 16 4 C -0.13 -1.42 10.03 -39.64 -0.40 -1.81 16 5 C -0.08 -0.96 9.53 -39.19 -0.37 -1.33 16 6 C -0.13 -1.79 5.87 -104.97 -0.62 -2.41 16 7 C 0.56 8.03 7.67 -12.33 -0.09 7.94 16 8 O -0.54 -8.79 13.01 5.33 0.07 -8.72 16 9 N -0.70 -8.81 4.75 -54.75 -0.26 -9.07 16 10 C 0.15 1.73 2.35 -67.93 -0.16 1.57 16 11 H 0.09 1.21 6.23 -51.93 -0.32 0.88 16 12 C -0.16 -1.54 9.48 37.16 0.35 -1.19 16 13 C 0.04 0.49 4.52 -3.82 -0.02 0.47 16 14 N -0.51 -8.07 4.22 -244.37 -1.03 -9.10 16 15 C 0.02 0.36 8.96 60.06 0.54 0.90 16 16 C 0.04 0.76 5.45 -4.98 -0.03 0.73 16 17 C 0.44 10.17 7.48 -10.99 -0.08 10.09 16 18 O -0.58 -15.16 13.91 5.54 0.08 -15.08 16 19 N -0.56 -14.03 5.29 -10.96 -0.06 -14.09 16 20 C -0.30 -8.22 9.68 -14.93 -0.14 -8.36 16 21 H 0.10 2.95 7.16 -52.48 -0.38 2.57 16 22 C 0.02 0.60 5.50 -17.47 -0.10 0.50 16 23 N -0.90 -24.33 13.05 55.50 0.72 -23.61 16 24 Si 0.93 20.95 29.55 -169.99 -5.02 15.93 16 25 H -0.27 -6.16 7.11 56.52 0.40 -5.75 16 26 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 27 H -0.27 -6.12 7.11 56.52 0.40 -5.72 16 28 C -0.03 -0.32 5.91 -104.23 -0.62 -0.94 16 29 C -0.12 -1.41 8.08 36.01 0.29 -1.12 16 30 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 31 H 0.07 0.54 6.58 -51.93 -0.34 0.20 16 32 H 0.07 0.45 8.08 -51.93 -0.42 0.03 16 33 H 0.12 0.95 8.06 -52.48 -0.42 0.53 16 34 H 0.13 1.14 8.06 -52.48 -0.42 0.72 16 35 H 0.13 1.43 6.45 -52.48 -0.34 1.09 16 36 H 0.40 4.74 6.68 -40.82 -0.27 4.47 16 37 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 38 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 39 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 40 H 0.05 0.51 8.12 -51.92 -0.42 0.09 16 41 H 0.08 0.81 7.93 -51.93 -0.41 0.40 16 42 H 0.01 0.21 8.14 -51.93 -0.42 -0.21 16 43 H 0.10 1.95 5.82 -51.92 -0.30 1.64 16 44 H 0.06 0.98 6.58 -51.93 -0.34 0.64 16 45 H 0.05 0.75 8.12 -51.93 -0.42 0.32 16 46 H 0.09 1.30 7.93 -51.92 -0.41 0.89 16 47 H 0.39 9.31 7.90 -40.82 -0.32 8.99 16 48 H 0.27 6.96 8.31 -40.82 -0.34 6.62 16 49 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 50 H 0.06 0.53 6.35 -51.93 -0.33 0.20 16 51 H 0.09 1.24 5.86 -51.93 -0.30 0.93 16 LS Contribution 409.43 15.07 6.17 6.17 Total: -1.00 -32.23 409.43 -9.30 -41.53 By element: Atomic # 1 Polarization: 22.50 SS G_CDS: -7.86 Total: 14.64 kcal Atomic # 6 Polarization: 3.51 SS G_CDS: -2.11 Total: 1.40 kcal Atomic # 7 Polarization: -55.24 SS G_CDS: -0.63 Total: -55.87 kcal Atomic # 8 Polarization: -23.95 SS G_CDS: 0.15 Total: -23.81 kcal Atomic # 14 Polarization: 20.95 SS G_CDS: -5.02 Total: 15.93 kcal Total LS contribution 6.17 Total: 6.17 kcal Total: -32.23 -9.30 -41.53 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699473156.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.737 kcal (2) G-P(sol) polarization free energy of solvation -32.232 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.968 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.301 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.533 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.269 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.55 seconds