Wall clock time and date at job start Wed Apr 1 2020 04:22:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38371 * 119.92743 * 2 1 4 4 C 1.38339 * 120.29315 * 179.97438 * 3 2 1 5 5 C 1.37977 * 120.14348 * 0.02562 * 4 3 2 6 6 C 1.39552 * 119.85092 * 359.97438 * 5 4 3 7 7 C 1.47852 * 120.14171 * 179.97438 * 6 5 4 8 8 O 1.21546 * 120.00073 * 173.80759 * 7 6 5 9 9 N 1.34774 * 120.00211 * 353.80222 * 7 6 5 10 10 C 1.46498 * 120.00286 * 180.02562 * 9 7 6 11 11 H 1.08995 * 109.47009 * 325.00050 * 10 9 7 12 12 C 1.52996 * 109.47232 * 85.00079 * 10 9 7 13 13 C 1.53001 * 109.46939 * 205.00029 * 10 9 7 14 14 N 1.46899 * 109.47445 * 55.00324 * 13 10 9 15 15 C 1.46891 * 111.00149 * 66.04042 * 14 13 10 16 16 C 1.46898 * 111.00294 * 189.99714 * 14 13 10 17 17 C 1.50697 * 109.47346 * 169.99512 * 16 14 13 18 18 O 1.21298 * 119.99901 * 0.02562 * 17 16 14 19 19 N 1.34779 * 120.00261 * 180.02562 * 17 16 14 20 20 C 1.37092 * 120.00169 * 179.97438 * 19 17 16 21 21 H 1.08003 * 120.00317 * 0.02562 * 20 19 17 22 22 C 1.38953 * 120.00066 * 179.97438 * 20 19 17 23 23 N 1.31409 * 119.99778 * 359.97438 * 22 20 19 24 24 Si 1.86801 * 119.99826 * 180.02562 * 22 20 19 25 25 H 1.48505 * 109.47163 * 60.00075 * 24 22 20 26 26 H 1.48500 * 109.46785 * 179.97438 * 24 22 20 27 27 H 1.48491 * 109.47278 * 300.00003 * 24 22 20 28 28 C 1.37931 * 119.92442 * 180.25521 * 2 1 3 29 29 C 1.50704 * 120.07880 * 0.02562 * 28 2 1 30 30 H 1.08999 * 109.47617 * 89.99783 * 1 2 3 31 31 H 1.09001 * 109.47346 * 210.00071 * 1 2 3 32 32 H 1.08998 * 109.47331 * 329.99634 * 1 2 3 33 33 H 1.08005 * 119.85791 * 359.97438 * 3 2 1 34 34 H 1.08007 * 119.92772 * 179.97438 * 4 3 2 35 35 H 1.08004 * 120.07368 * 180.02562 * 5 4 3 36 36 H 0.97009 * 119.99534 * 0.02562 * 9 7 6 37 37 H 1.09002 * 109.47221 * 300.00046 * 12 10 9 38 38 H 1.09003 * 109.46939 * 59.99752 * 12 10 9 39 39 H 1.08996 * 109.47549 * 180.02562 * 12 10 9 40 40 H 1.09007 * 109.46621 * 175.00019 * 13 10 9 41 41 H 1.08996 * 109.47245 * 294.99541 * 13 10 9 42 42 H 1.09000 * 109.47742 * 60.00506 * 15 14 13 43 43 H 1.09007 * 109.47517 * 180.02562 * 15 14 13 44 44 H 1.09002 * 109.47648 * 300.00518 * 15 14 13 45 45 H 1.09000 * 109.47063 * 289.99978 * 16 14 13 46 46 H 1.09008 * 109.46816 * 49.99546 * 16 14 13 47 47 H 0.96998 * 119.99592 * 0.02562 * 19 17 16 48 48 H 0.97003 * 119.99808 * 179.97438 * 23 22 20 49 49 H 1.09002 * 109.47097 * 263.69086 * 29 28 2 50 50 H 1.08997 * 109.46643 * 23.68947 * 29 28 2 51 51 H 1.08998 * 109.47295 * 143.69482 * 29 28 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1973 1.1992 0.0000 4 6 3.5807 1.2080 0.0005 5 6 4.2812 0.0193 0.0005 6 6 3.5910 -1.1936 0.0005 7 6 4.3352 -2.4712 0.0000 8 8 3.7368 -3.5231 0.1135 9 7 5.6769 -2.4695 -0.1266 10 6 6.4142 -3.7355 -0.1277 11 1 5.9292 -4.4390 0.5489 12 6 6.4283 -4.3162 -1.5431 13 6 7.8511 -3.4892 0.3369 14 7 7.8351 -2.8219 1.6454 15 6 7.2798 -3.7047 2.6798 16 6 9.1785 -2.3570 2.0158 17 6 9.0861 -1.4711 3.2314 18 8 8.0073 -1.2492 3.7395 19 7 10.2022 -0.9254 3.7539 20 6 10.1181 -0.1190 4.8594 21 1 9.1576 0.0786 5.3119 22 6 11.2689 0.4432 5.3984 23 7 12.4377 0.2016 4.8488 24 14 11.1543 1.5413 6.9052 25 1 10.5674 0.7743 8.0333 26 1 12.5124 2.0107 7.2799 27 1 10.2921 2.7113 6.6007 28 6 2.1951 -1.1954 -0.0053 29 6 1.4416 -2.5006 -0.0117 30 1 -0.3634 0.0000 -1.0276 31 1 -0.3634 -0.8900 0.5138 32 1 -0.3634 0.8899 0.5139 33 1 1.6538 2.1325 -0.0004 34 1 4.1136 2.1475 0.0001 35 1 5.3612 0.0275 0.0014 36 1 6.1545 -1.6300 -0.2169 37 1 5.4047 -4.4916 -1.8741 38 1 6.9134 -3.6126 -2.2197 39 1 6.9765 -5.2583 -1.5439 40 1 8.3739 -4.4420 0.4212 41 1 8.3637 -2.8564 -0.3875 42 1 7.8892 -4.6054 2.7544 43 1 7.2792 -3.1858 3.6385 44 1 6.2586 -3.9781 2.4144 45 1 9.8114 -3.2159 2.2393 46 1 9.6092 -1.7940 1.1877 47 1 11.0648 -1.1026 3.3473 48 1 13.2410 0.5943 5.2248 49 1 1.3574 -2.8765 1.0080 50 1 0.4452 -2.3427 -0.4243 51 1 1.9774 -3.2264 -0.6234 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001699473156.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:22:20 Heat of formation + Delta-G solvation = -65.723331 kcal Electronic energy + Delta-G solvation = -30775.305284 eV Core-core repulsion = 26673.608526 eV Total energy + Delta-G solvation = -4101.696757 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 3.21 seconds Orbital eigenvalues (eV) -41.48771 -40.40678 -39.64806 -38.23084 -36.16354 -35.60468 -34.38875 -33.25944 -33.19365 -31.79316 -29.48869 -28.50179 -28.01535 -27.34246 -26.65078 -24.89407 -23.75459 -21.98023 -21.65344 -21.06272 -20.94179 -19.83094 -18.49899 -17.76626 -17.43384 -16.68364 -16.66556 -16.49785 -16.45158 -16.17615 -16.00176 -15.58245 -15.56063 -15.12464 -14.96708 -14.74401 -14.31342 -14.12976 -13.91633 -13.67352 -13.65505 -13.49584 -13.41538 -13.22073 -13.13711 -12.92184 -12.88477 -12.71677 -12.66168 -12.65146 -12.51390 -12.44761 -12.38892 -12.12733 -11.80926 -11.70296 -11.43822 -10.58303 -10.26129 -10.09143 -9.97628 -9.70010 -9.51473 -9.21226 -8.44991 -5.92894 -0.08759 0.38788 1.39650 1.41534 1.51924 1.91745 2.09291 2.23777 2.29547 2.75822 2.85851 3.22304 3.43993 3.72326 3.79231 3.85747 3.93022 4.09787 4.15143 4.22059 4.28595 4.34346 4.39386 4.42238 4.53837 4.54229 4.58203 4.67467 4.70094 4.73391 4.76877 4.79560 4.81396 4.85571 4.90836 4.98838 5.03955 5.16518 5.20296 5.28658 5.31377 5.40446 5.42398 5.49763 5.60675 5.67369 5.88121 6.00199 6.06167 6.18849 6.61448 6.63698 7.15830 7.28234 7.60117 8.16773 8.72170 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.010597 B = 0.002652 C = 0.002248 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2641.586512 B =10555.136562 C =12451.592157 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.108 4.108 3 C -0.093 4.093 4 C -0.136 4.136 5 C -0.092 4.092 6 C -0.157 4.157 7 C 0.555 3.445 8 O -0.571 6.571 9 N -0.696 5.696 10 C 0.148 3.852 11 H 0.066 0.934 12 C -0.151 4.151 13 C 0.047 3.953 14 N -0.529 5.529 15 C 0.032 3.968 16 C 0.058 3.942 17 C 0.442 3.558 18 O -0.614 6.614 19 N -0.575 5.575 20 C -0.330 4.330 21 H 0.077 0.923 22 C -0.012 4.012 23 N -0.921 5.921 24 Si 0.989 3.011 25 H -0.274 1.274 26 H -0.271 1.271 27 H -0.272 1.272 28 C -0.047 4.047 29 C -0.113 4.113 30 H 0.083 0.917 31 H 0.070 0.930 32 H 0.082 0.918 33 H 0.153 0.847 34 H 0.147 0.853 35 H 0.132 0.868 36 H 0.408 0.592 37 H 0.046 0.954 38 H 0.073 0.927 39 H 0.083 0.917 40 H 0.067 0.933 41 H 0.103 0.897 42 H 0.032 0.968 43 H 0.053 0.947 44 H 0.059 0.941 45 H 0.067 0.933 46 H 0.117 0.883 47 H 0.396 0.604 48 H 0.277 0.723 49 H 0.060 0.940 50 H 0.081 0.919 51 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.829 -2.929 -16.541 22.407 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.108 4.108 3 C -0.111 4.111 4 C -0.154 4.154 5 C -0.111 4.111 6 C -0.160 4.160 7 C 0.344 3.656 8 O -0.453 6.453 9 N -0.346 5.346 10 C 0.043 3.957 11 H 0.084 0.916 12 C -0.210 4.210 13 C -0.081 4.081 14 N -0.253 5.253 15 C -0.116 4.116 16 C -0.073 4.073 17 C 0.229 3.771 18 O -0.500 6.500 19 N -0.213 5.213 20 C -0.460 4.460 21 H 0.095 0.905 22 C -0.212 4.212 23 N -0.562 5.562 24 Si 0.813 3.187 25 H -0.200 1.200 26 H -0.195 1.195 27 H -0.197 1.197 28 C -0.048 4.048 29 C -0.169 4.169 30 H 0.102 0.898 31 H 0.089 0.911 32 H 0.100 0.900 33 H 0.171 0.829 34 H 0.165 0.835 35 H 0.150 0.850 36 H 0.244 0.756 37 H 0.065 0.935 38 H 0.092 0.908 39 H 0.102 0.898 40 H 0.085 0.915 41 H 0.121 0.879 42 H 0.050 0.950 43 H 0.072 0.928 44 H 0.078 0.922 45 H 0.085 0.915 46 H 0.135 0.865 47 H 0.230 0.770 48 H 0.086 0.914 49 H 0.079 0.921 50 H 0.099 0.901 51 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -16.024 -3.075 -16.110 22.929 hybrid contribution 1.503 0.073 0.990 1.801 sum -14.521 -3.002 -15.120 21.177 Atomic orbital electron populations 1.20872 0.88851 1.03785 1.03414 1.20107 0.97858 0.91889 1.00905 1.21587 0.94265 0.98464 0.96769 1.21400 0.94873 0.98423 1.00713 1.21489 1.00443 0.91928 0.97237 1.19910 0.94305 0.93172 1.08651 1.18463 0.82651 0.88755 0.75760 1.90661 1.68594 1.34020 1.52027 1.45758 1.05773 1.10474 1.72603 1.21000 0.91283 0.85522 0.97919 0.91631 1.22060 1.02126 1.02055 0.94756 1.22591 0.95635 0.99515 0.90347 1.61474 1.21063 1.40019 1.02788 1.22321 0.99056 0.94170 0.96051 1.21763 0.90873 0.98216 0.96450 1.20824 0.83946 0.84689 0.87642 1.90488 1.29163 1.65368 1.64990 1.41922 1.08465 1.43802 1.27111 1.19572 0.94756 1.25438 1.06198 0.90547 1.25972 0.94114 0.99319 1.01787 1.69659 0.98536 1.45559 1.42413 0.85051 0.77648 0.78267 0.77768 1.19977 1.19509 1.19690 1.20103 0.92067 0.96599 0.96078 1.20986 0.99666 0.93731 1.02520 0.89798 0.91084 0.89962 0.82910 0.83480 0.85006 0.75567 0.93520 0.90823 0.89813 0.91472 0.87878 0.94964 0.92832 0.92239 0.91469 0.86498 0.77032 0.91374 0.92124 0.90075 0.90608 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.55 9.18 71.24 0.65 -0.90 16 2 C -0.11 -2.19 5.87 -19.91 -0.12 -2.31 16 3 C -0.09 -1.72 9.69 22.33 0.22 -1.50 16 4 C -0.14 -2.80 10.03 22.23 0.22 -2.58 16 5 C -0.09 -2.25 9.53 22.53 0.21 -2.03 16 6 C -0.16 -4.35 5.87 -20.09 -0.12 -4.47 16 7 C 0.55 16.52 7.67 86.79 0.67 17.18 16 8 O -0.57 -19.54 13.01 -3.86 -0.05 -19.59 16 9 N -0.70 -17.55 4.75 -445.43 -2.12 -19.66 16 10 C 0.15 3.33 2.35 44.99 0.11 3.43 16 11 H 0.07 1.80 6.23 -2.39 -0.01 1.79 16 12 C -0.15 -2.64 9.48 71.98 0.68 -1.96 16 13 C 0.05 0.97 4.52 86.30 0.39 1.36 16 14 N -0.53 -15.95 4.22 -927.06 -3.92 -19.87 16 15 C 0.03 1.08 8.96 127.69 1.14 2.22 16 16 C 0.06 1.86 5.45 85.56 0.47 2.33 16 17 C 0.44 20.38 7.48 87.66 0.66 21.04 16 18 O -0.61 -33.38 13.91 -3.09 -0.04 -33.42 16 19 N -0.58 -28.89 5.29 -306.98 -1.62 -30.51 16 20 C -0.33 -18.56 9.68 84.04 0.81 -17.74 16 21 H 0.08 4.61 7.16 -2.91 -0.02 4.59 16 22 C -0.01 -0.65 5.50 84.93 0.47 -0.18 16 23 N -0.92 -49.20 13.05 21.66 0.28 -48.92 16 24 Si 0.99 42.84 29.55 68.60 2.03 44.86 16 25 H -0.27 -11.84 7.11 99.48 0.71 -11.13 16 26 H -0.27 -11.03 7.11 99.48 0.71 -10.33 16 27 H -0.27 -11.62 7.11 99.48 0.71 -10.92 16 28 C -0.05 -1.21 5.91 -19.61 -0.12 -1.32 16 29 C -0.11 -2.72 8.08 71.24 0.58 -2.15 16 30 H 0.08 0.93 8.14 -2.39 -0.02 0.91 16 31 H 0.07 0.98 6.58 -2.39 -0.02 0.96 16 32 H 0.08 0.88 8.08 -2.39 -0.02 0.86 16 33 H 0.15 1.88 8.06 -2.91 -0.02 1.85 16 34 H 0.15 2.36 8.06 -2.91 -0.02 2.34 16 35 H 0.13 2.96 6.45 -2.91 -0.02 2.94 16 36 H 0.41 9.45 6.68 -92.70 -0.62 8.83 16 37 H 0.05 0.99 8.14 -2.39 -0.02 0.97 16 38 H 0.07 1.07 8.14 -2.39 -0.02 1.05 16 39 H 0.08 1.16 8.14 -2.39 -0.02 1.14 16 40 H 0.07 1.20 8.12 -2.38 -0.02 1.18 16 41 H 0.10 1.71 7.93 -2.39 -0.02 1.69 16 42 H 0.03 0.94 8.14 -2.39 -0.02 0.92 16 43 H 0.05 2.26 5.82 -2.38 -0.01 2.24 16 44 H 0.06 1.97 6.58 -2.39 -0.02 1.96 16 45 H 0.07 1.94 8.12 -2.39 -0.02 1.92 16 46 H 0.12 3.12 7.93 -2.38 -0.02 3.10 16 47 H 0.40 18.81 7.90 -92.71 -0.73 18.08 16 48 H 0.28 13.92 8.31 -92.71 -0.77 13.15 16 49 H 0.06 1.58 8.14 -2.39 -0.02 1.56 16 50 H 0.08 1.47 6.35 -2.39 -0.02 1.46 16 51 H 0.08 2.11 5.86 -2.39 -0.01 2.10 16 Total: -1.00 -72.60 409.43 1.10 -71.50 By element: Atomic # 1 Polarization: 45.58 SS G_CDS: -0.39 Total: 45.20 kcal Atomic # 6 Polarization: 3.50 SS G_CDS: 6.92 Total: 10.42 kcal Atomic # 7 Polarization: -111.60 SS G_CDS: -7.37 Total: -118.97 kcal Atomic # 8 Polarization: -52.92 SS G_CDS: -0.09 Total: -53.01 kcal Atomic # 14 Polarization: 42.84 SS G_CDS: 2.03 Total: 44.86 kcal Total: -72.60 1.10 -71.50 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699473156.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.777 kcal (2) G-P(sol) polarization free energy of solvation -72.596 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.819 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.096 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.500 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.723 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.21 seconds