Wall clock time and date at job start Wed Apr 1 2020 04:20:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38232 * 120.00184 * 2 1 4 4 C 1.38237 * 120.00019 * 179.97438 * 3 2 1 5 5 C 1.38231 * 119.99929 * 359.97438 * 4 3 2 6 6 C 1.50703 * 120.00146 * 179.97438 * 5 4 3 7 7 C 1.50700 * 109.47148 * 89.99740 * 6 5 4 8 8 O 1.21283 * 119.99803 * 0.02562 * 7 6 5 9 9 N 1.34777 * 119.99675 * 180.28037 * 7 6 5 10 10 C 1.46497 * 119.99525 * 179.72583 * 9 7 6 11 11 H 1.09001 * 109.47884 * 324.99780 * 10 9 7 12 12 C 1.53008 * 109.47335 * 84.99977 * 10 9 7 13 13 C 1.53001 * 109.47201 * 204.99403 * 10 9 7 14 14 H 1.09004 * 109.46821 * 64.99852 * 13 10 9 15 15 C 1.53000 * 109.47270 * 305.00547 * 13 10 9 16 16 N 1.46894 * 109.47622 * 185.00107 * 13 10 9 17 17 C 1.46899 * 111.00208 * 205.00482 * 16 13 10 18 18 C 1.50698 * 109.47037 * 180.02562 * 17 16 13 19 19 O 1.21291 * 120.00276 * 359.97438 * 18 17 16 20 20 N 1.34785 * 119.99979 * 179.97438 * 18 17 16 21 21 C 1.37094 * 120.00301 * 179.97438 * 20 18 17 22 22 H 1.08001 * 119.99574 * 0.02562 * 21 20 18 23 23 C 1.38947 * 120.00169 * 180.02562 * 21 20 18 24 24 N 1.31416 * 119.99913 * 180.02562 * 23 21 20 25 25 Si 1.86799 * 120.00012 * 0.02562 * 23 21 20 26 26 H 1.48495 * 109.46947 * 89.99887 * 25 23 21 27 27 H 1.48499 * 109.46857 * 209.99850 * 25 23 21 28 28 H 1.48497 * 109.47228 * 329.99916 * 25 23 21 29 29 C 1.38233 * 120.00119 * 0.25187 * 5 4 3 30 30 C 1.38238 * 119.99473 * 179.97438 * 2 1 3 31 31 H 1.09003 * 109.46784 * 90.00550 * 1 2 3 32 32 H 1.09001 * 109.47744 * 210.00492 * 1 2 3 33 33 H 1.08995 * 109.47297 * 330.00724 * 1 2 3 34 34 H 1.08005 * 119.99795 * 359.97012 * 3 2 1 35 35 H 1.07994 * 119.99787 * 179.97438 * 4 3 2 36 36 H 1.09009 * 109.46601 * 329.99762 * 6 5 4 37 37 H 1.08998 * 109.47035 * 210.00270 * 6 5 4 38 38 H 0.97000 * 119.99894 * 359.71837 * 9 7 6 39 39 H 1.08994 * 109.47201 * 59.99659 * 12 10 9 40 40 H 1.08995 * 109.47273 * 180.02562 * 12 10 9 41 41 H 1.08998 * 109.46811 * 299.99762 * 12 10 9 42 42 H 1.09004 * 109.46631 * 299.99421 * 15 13 10 43 43 H 1.09000 * 109.47318 * 59.99444 * 15 13 10 44 44 H 1.08998 * 109.47218 * 179.97438 * 15 13 10 45 45 H 1.00901 * 111.00306 * 81.04420 * 16 13 10 46 46 H 1.09001 * 109.46902 * 300.00031 * 17 16 13 47 47 H 1.09004 * 109.47165 * 60.00006 * 17 16 13 48 48 H 0.97004 * 119.99780 * 0.02562 * 20 18 17 49 49 H 0.97000 * 119.99826 * 180.02562 * 24 23 21 50 50 H 1.08002 * 120.00409 * 179.72430 * 29 5 4 51 51 H 1.07994 * 120.00575 * 0.02562 * 30 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1971 0.0000 4 6 3.5806 1.1971 0.0005 5 6 4.2717 -0.0001 0.0016 6 6 5.7787 -0.0002 0.0016 7 6 6.2810 0.0011 1.4224 8 8 5.4929 0.0016 2.3442 9 7 7.6061 0.0070 1.6686 10 6 8.0944 0.0143 3.0498 11 1 7.4197 0.6038 3.6707 12 6 8.1511 -1.4204 3.5784 13 6 9.4948 0.6291 3.0924 14 1 9.4402 1.6779 2.8003 15 6 10.4115 -0.1226 2.1252 16 7 10.0328 0.5279 4.4556 17 6 11.0408 1.5677 4.7022 18 6 11.5691 1.4319 6.1070 19 8 11.1471 0.5556 6.8317 20 7 12.5106 2.2843 6.5583 21 6 12.9908 2.1612 7.8365 22 1 12.6150 1.3808 8.4816 23 6 13.9610 3.0403 8.3018 24 7 14.4217 2.9219 9.5269 25 14 14.6105 4.3903 7.1861 26 1 13.7804 5.6105 7.3507 27 1 16.0179 4.6967 7.5474 28 1 14.5496 3.9371 5.7733 29 6 3.5805 -1.1972 -0.0031 30 6 2.1981 -1.1972 0.0005 31 1 -0.3633 -0.0001 -1.0277 32 1 -0.3634 -0.8899 0.5139 33 1 -0.3633 0.8900 0.5137 34 1 1.6582 2.1325 -0.0005 35 1 4.1205 2.1323 0.0001 36 1 6.1420 0.8894 -0.5131 37 1 6.1419 -0.8906 -0.5115 38 1 8.2364 0.0062 0.9313 39 1 8.8258 -2.0099 2.9576 40 1 8.5140 -1.4149 4.6061 41 1 7.1535 -1.8585 3.5480 42 1 10.4661 -1.1713 2.4174 43 1 10.0123 -0.0475 1.1137 44 1 11.4090 0.3157 2.1553 45 1 10.4118 -0.3912 4.6274 46 1 11.8610 1.4539 3.9934 47 1 10.5868 2.5508 4.5778 48 1 12.8479 2.9854 5.9789 49 1 15.0988 3.5358 9.8519 50 1 4.1204 -2.1326 -0.0068 51 1 1.6581 -2.1325 0.0005 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001700406712.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:20:35 Heat of formation + Delta-G solvation = -78.062564 kcal Electronic energy + Delta-G solvation = -29272.902705 eV Core-core repulsion = 25170.670878 eV Total energy + Delta-G solvation = -4102.231827 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -41.21113 -40.39334 -39.93879 -38.50549 -36.08575 -35.34261 -34.69237 -33.74588 -32.27410 -31.78519 -30.53098 -29.81007 -28.09831 -26.49629 -25.84842 -24.82422 -23.61333 -22.24137 -21.32086 -21.21586 -20.76865 -20.31035 -18.36470 -17.60924 -17.36961 -17.01830 -16.75001 -16.54014 -16.52086 -16.02933 -15.91932 -15.68602 -15.27620 -15.05907 -14.98838 -14.75871 -14.50203 -14.40987 -14.27580 -13.99202 -13.90170 -13.61396 -13.40143 -13.23801 -13.15616 -13.04825 -12.89816 -12.73530 -12.65772 -12.53900 -12.40488 -11.99287 -11.97740 -11.83701 -11.80702 -11.78175 -11.50946 -10.90009 -10.44693 -10.24312 -10.05924 -9.78323 -9.37217 -9.29412 -8.40817 -6.01944 0.41319 0.54391 1.30127 1.36620 1.45164 1.72000 1.96688 2.14950 2.23768 2.78009 2.94378 3.15661 3.47277 3.72225 3.79927 3.90275 3.93265 4.07814 4.13782 4.16432 4.17416 4.25104 4.31736 4.43125 4.47655 4.54383 4.59317 4.61870 4.65495 4.66361 4.76268 4.82871 4.87518 4.88925 4.98556 4.99290 5.07382 5.21972 5.24472 5.31327 5.43748 5.52091 5.52572 5.58046 5.69215 5.73102 5.91462 6.06082 6.16344 6.39846 6.60219 6.64707 6.88820 7.36765 7.40452 7.97612 8.76952 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.022622 B = 0.001571 C = 0.001554 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1237.439874 B =17817.426526 C =18007.975711 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.102 4.102 3 C -0.135 4.135 4 C -0.117 4.117 5 C -0.087 4.087 6 C -0.094 4.094 7 C 0.510 3.490 8 O -0.582 6.582 9 N -0.710 5.710 10 C 0.160 3.840 11 H 0.058 0.942 12 C -0.156 4.156 13 C 0.085 3.915 14 H 0.095 0.905 15 C -0.184 4.184 16 N -0.682 5.682 17 C 0.065 3.935 18 C 0.447 3.553 19 O -0.615 6.615 20 N -0.590 5.590 21 C -0.330 4.330 22 H 0.053 0.947 23 C -0.015 4.015 24 N -0.935 5.935 25 Si 0.966 3.034 26 H -0.259 1.259 27 H -0.275 1.275 28 H -0.228 1.228 29 C -0.117 4.117 30 C -0.135 4.135 31 H 0.081 0.919 32 H 0.070 0.930 33 H 0.070 0.930 34 H 0.133 0.867 35 H 0.130 0.870 36 H 0.130 0.870 37 H 0.130 0.870 38 H 0.415 0.585 39 H 0.075 0.925 40 H 0.058 0.942 41 H 0.038 0.962 42 H 0.062 0.938 43 H 0.088 0.912 44 H 0.064 0.936 45 H 0.348 0.652 46 H 0.083 0.917 47 H 0.113 0.887 48 H 0.390 0.610 49 H 0.279 0.721 50 H 0.130 0.870 51 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.271 -3.131 -32.827 37.700 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.102 4.102 3 C -0.153 4.153 4 C -0.135 4.135 5 C -0.087 4.087 6 C -0.133 4.133 7 C 0.298 3.702 8 O -0.461 6.461 9 N -0.365 5.365 10 C 0.054 3.946 11 H 0.076 0.924 12 C -0.214 4.214 13 C -0.025 4.025 14 H 0.113 0.887 15 C -0.243 4.243 16 N -0.315 5.315 17 C -0.067 4.067 18 C 0.235 3.765 19 O -0.500 6.500 20 N -0.232 5.232 21 C -0.459 4.459 22 H 0.072 0.928 23 C -0.214 4.214 24 N -0.576 5.576 25 Si 0.786 3.214 26 H -0.183 1.183 27 H -0.201 1.201 28 H -0.151 1.151 29 C -0.135 4.135 30 C -0.153 4.153 31 H 0.099 0.901 32 H 0.089 0.911 33 H 0.089 0.911 34 H 0.151 0.849 35 H 0.148 0.852 36 H 0.148 0.852 37 H 0.148 0.852 38 H 0.254 0.746 39 H 0.094 0.906 40 H 0.077 0.923 41 H 0.057 0.943 42 H 0.081 0.919 43 H 0.107 0.893 44 H 0.083 0.917 45 H 0.168 0.832 46 H 0.101 0.899 47 H 0.131 0.869 48 H 0.226 0.774 49 H 0.088 0.912 50 H 0.148 0.852 51 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -19.478 -3.295 -31.234 36.957 hybrid contribution 1.545 0.246 -0.054 1.565 sum -17.933 -3.049 -31.287 36.191 Atomic orbital electron populations 1.20823 0.89768 1.03282 1.03062 1.20268 0.97400 0.93241 0.99250 1.21269 0.94405 0.98321 1.01311 1.21235 0.94713 0.98015 0.99527 1.19534 0.94913 0.93565 1.00686 1.20733 0.91993 1.07881 0.92694 1.21158 0.82142 0.74822 0.92070 1.90746 1.56552 1.50699 1.48109 1.46013 1.06877 1.75048 1.08559 1.20584 0.94692 0.96580 0.82701 0.92400 1.22079 1.01215 0.96356 1.01755 1.21717 0.92765 1.00922 0.87103 0.88705 1.22566 1.00089 1.01113 1.00504 1.59938 1.38219 1.07512 1.25845 1.21645 0.95448 0.98241 0.91410 1.21053 0.81335 0.83128 0.90985 1.90553 1.61497 1.37607 1.60306 1.42018 1.37586 1.30763 1.12864 1.19011 1.21108 1.16121 0.89705 0.92842 1.26136 0.96376 1.00853 0.98029 1.69814 1.30192 1.39451 1.18144 0.85349 0.78430 0.78005 0.79620 1.18345 1.20053 1.15107 1.21233 0.94701 0.97985 0.99550 1.21271 0.94403 0.98310 1.01317 0.90067 0.91107 0.91139 0.84874 0.85228 0.85163 0.85207 0.74555 0.90649 0.92278 0.94265 0.91880 0.89307 0.91667 0.83153 0.89924 0.86945 0.77418 0.91174 0.85216 0.84839 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.26 10.01 71.24 0.71 -0.55 16 2 C -0.10 -1.69 5.88 -19.87 -0.12 -1.81 16 3 C -0.14 -2.31 9.70 22.27 0.22 -2.10 16 4 C -0.12 -2.05 9.70 22.27 0.22 -1.83 16 5 C -0.09 -1.47 4.37 -19.87 -0.09 -1.56 16 6 C -0.09 -1.03 5.83 29.10 0.17 -0.86 16 7 C 0.51 9.73 7.79 87.66 0.68 10.41 16 8 O -0.58 -17.83 15.70 -3.04 -0.05 -17.88 16 9 N -0.71 -10.31 4.99 -442.52 -2.21 -12.52 16 10 C 0.16 3.39 2.63 45.00 0.12 3.51 16 11 H 0.06 1.69 7.58 -2.39 -0.02 1.68 16 12 C -0.16 -3.56 8.86 71.98 0.64 -2.92 16 13 C 0.09 1.56 2.64 44.92 0.12 1.68 16 14 H 0.09 1.54 7.80 -2.38 -0.02 1.52 16 15 C -0.18 -2.21 8.68 71.98 0.62 -1.59 16 16 N -0.68 -18.84 5.23 -495.58 -2.59 -21.43 16 17 C 0.06 1.86 5.97 85.56 0.51 2.37 16 18 C 0.45 19.90 7.82 87.66 0.69 20.58 16 19 O -0.62 -34.15 15.78 -3.06 -0.05 -34.20 16 20 N -0.59 -27.54 5.09 -306.98 -1.56 -29.10 16 21 C -0.33 -19.39 10.16 84.04 0.85 -18.54 16 22 H 0.05 3.76 7.39 -2.91 -0.02 3.74 16 23 C -0.02 -0.86 5.50 84.92 0.47 -0.39 16 24 N -0.94 -56.59 13.96 21.66 0.30 -56.29 16 25 Si 0.97 38.38 27.74 68.60 1.90 40.28 16 26 H -0.26 -9.83 7.11 99.48 0.71 -9.12 16 27 H -0.28 -10.87 7.11 99.48 0.71 -10.17 16 28 H -0.23 -7.45 6.52 99.48 0.65 -6.80 16 29 C -0.12 -2.03 9.70 22.27 0.22 -1.81 16 30 C -0.14 -2.29 9.70 22.27 0.22 -2.08 16 31 H 0.08 0.70 8.14 -2.39 -0.02 0.68 16 32 H 0.07 0.71 8.09 -2.39 -0.02 0.69 16 33 H 0.07 0.72 8.09 -2.39 -0.02 0.70 16 34 H 0.13 1.77 8.06 -2.91 -0.02 1.74 16 35 H 0.13 1.85 8.06 -2.91 -0.02 1.82 16 36 H 0.13 0.69 8.09 -2.38 -0.02 0.68 16 37 H 0.13 0.69 8.08 -2.39 -0.02 0.67 16 38 H 0.42 2.80 6.58 -92.71 -0.61 2.19 16 39 H 0.07 1.35 6.56 -2.39 -0.02 1.33 16 40 H 0.06 1.61 7.13 -2.39 -0.02 1.60 16 41 H 0.04 1.01 8.14 -2.39 -0.02 0.99 16 42 H 0.06 0.84 6.55 -2.38 -0.02 0.82 16 43 H 0.09 0.52 6.29 -2.39 -0.02 0.51 16 44 H 0.06 0.79 7.45 -2.39 -0.02 0.78 16 45 H 0.35 10.33 7.39 -89.69 -0.66 9.67 16 46 H 0.08 1.82 7.44 -2.39 -0.02 1.81 16 47 H 0.11 2.74 8.06 -2.38 -0.02 2.72 16 48 H 0.39 14.85 5.76 -92.71 -0.53 14.32 16 49 H 0.28 15.40 8.31 -92.71 -0.77 14.63 16 50 H 0.13 1.81 8.06 -2.91 -0.02 1.79 16 51 H 0.13 1.74 8.06 -2.91 -0.02 1.72 16 Total: -1.00 -87.02 415.30 1.09 -85.93 By element: Atomic # 1 Polarization: 43.60 SS G_CDS: -0.90 Total: 42.70 kcal Atomic # 6 Polarization: -3.73 SS G_CDS: 6.24 Total: 2.51 kcal Atomic # 7 Polarization: -113.28 SS G_CDS: -6.06 Total: -119.34 kcal Atomic # 8 Polarization: -51.98 SS G_CDS: -0.10 Total: -52.08 kcal Atomic # 14 Polarization: 38.38 SS G_CDS: 1.90 Total: 40.28 kcal Total: -87.02 1.09 -85.93 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001700406712.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.871 kcal (2) G-P(sol) polarization free energy of solvation -87.022 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.151 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.089 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.934 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.063 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds