Wall clock time and date at job start Wed Apr 1 2020 04:20:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38256 * 120.00405 * 2 1 4 4 C 1.38205 * 120.00512 * 179.97438 * 3 2 1 5 5 C 1.38260 * 119.99844 * 359.81062 * 4 3 2 6 6 C 1.38221 * 119.99825 * 0.42033 * 5 4 3 7 7 C 1.50697 * 120.00011 * 179.81013 * 6 5 4 8 8 C 1.50699 * 109.47104 * 269.72460 * 7 6 5 9 9 O 1.21287 * 119.99956 * 359.97438 * 8 7 6 10 10 N 1.34777 * 120.00179 * 180.02562 * 8 7 6 11 11 C 1.46500 * 120.00075 * 179.97438 * 10 8 7 12 12 H 1.09002 * 109.47092 * 324.99806 * 11 10 8 13 13 C 1.52997 * 109.47007 * 84.99755 * 11 10 8 14 14 C 1.53000 * 109.47023 * 204.99547 * 11 10 8 15 15 H 1.09002 * 109.46642 * 65.00310 * 14 11 10 16 16 C 1.52993 * 109.47345 * 305.00398 * 14 11 10 17 17 N 1.46900 * 109.47017 * 184.99920 * 14 11 10 18 18 C 1.46900 * 110.99922 * 205.00378 * 17 14 11 19 19 C 1.50700 * 109.46923 * 180.02562 * 18 17 14 20 20 O 1.21286 * 120.00454 * 359.97438 * 19 18 17 21 21 N 1.34781 * 119.99996 * 179.97438 * 19 18 17 22 22 C 1.37101 * 120.00375 * 179.97438 * 21 19 18 23 23 H 1.08000 * 119.99688 * 359.97438 * 22 21 19 24 24 C 1.38939 * 120.00272 * 179.97438 * 22 21 19 25 25 N 1.31418 * 120.00197 * 180.02562 * 24 22 21 26 26 Si 1.86800 * 120.00041 * 0.02562 * 24 22 21 27 27 H 1.48496 * 109.47260 * 89.99968 * 26 24 22 28 28 H 1.48502 * 109.47185 * 210.00141 * 26 24 22 29 29 H 1.48505 * 109.47077 * 330.00004 * 26 24 22 30 30 C 1.38211 * 119.99827 * 179.97438 * 2 1 3 31 31 H 1.09001 * 109.47629 * 270.02659 * 1 2 3 32 32 H 1.09004 * 109.46795 * 30.02181 * 1 2 3 33 33 H 1.09001 * 109.47343 * 150.02238 * 1 2 3 34 34 H 1.08006 * 119.99475 * 359.97438 * 3 2 1 35 35 H 1.07997 * 120.00613 * 180.02562 * 4 3 2 36 36 H 1.07996 * 120.00461 * 180.22858 * 5 4 3 37 37 H 1.08999 * 109.46955 * 149.72516 * 7 6 5 38 38 H 1.08999 * 109.47007 * 29.72357 * 7 6 5 39 39 H 0.96997 * 119.99651 * 359.97438 * 10 8 7 40 40 H 1.09002 * 109.47153 * 60.00089 * 13 11 10 41 41 H 1.08998 * 109.47533 * 179.97438 * 13 11 10 42 42 H 1.08996 * 109.47853 * 300.00060 * 13 11 10 43 43 H 1.09002 * 109.47179 * 299.99584 * 16 14 11 44 44 H 1.08993 * 109.47639 * 59.99724 * 16 14 11 45 45 H 1.09004 * 109.47135 * 179.97438 * 16 14 11 46 46 H 1.00896 * 110.99965 * 81.04923 * 17 14 11 47 47 H 1.08997 * 109.47306 * 299.99760 * 18 17 14 48 48 H 1.08998 * 109.47445 * 59.99939 * 18 17 14 49 49 H 0.97001 * 119.99660 * 359.97438 * 21 19 18 50 50 H 0.96996 * 120.00276 * 180.02562 * 25 24 22 51 51 H 1.08002 * 120.00236 * 0.02562 * 30 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1984 1.1973 0.0000 4 6 3.5804 1.1973 0.0005 5 6 4.2717 -0.0001 0.0050 6 6 3.5806 -1.1971 0.0002 7 6 4.3340 -2.5022 0.0008 8 6 4.5848 -2.9380 -1.4198 9 8 4.1900 -2.2563 -2.3420 10 7 5.2468 -4.0860 -1.6657 11 6 5.4900 -4.5100 -3.0467 12 1 4.6430 -4.2225 -3.6696 13 6 6.7601 -3.8369 -3.5706 14 6 5.6629 -6.0296 -3.0907 15 1 4.7280 -6.5101 -2.8019 16 6 6.7707 -6.4452 -2.1208 17 7 6.0249 -6.4420 -4.4534 18 6 5.6338 -7.8358 -4.7029 19 6 6.0208 -8.2223 -6.1072 20 8 6.5681 -7.4160 -6.8292 21 7 5.7588 -9.4642 -6.5608 22 6 6.1104 -9.8157 -7.8384 23 1 6.5970 -9.0974 -8.4816 24 6 5.8408 -11.0960 -8.3059 25 7 6.1783 -11.4332 -9.5304 26 14 4.9985 -12.3383 -7.1937 27 1 3.5267 -12.2354 -7.3621 28 1 5.4435 -13.7081 -7.5552 29 1 5.3557 -12.0588 -5.7796 30 6 2.1980 -1.1970 0.0005 31 1 -0.3634 0.0005 1.0276 32 1 -0.3633 0.8898 -0.5142 33 1 -0.3634 -0.8902 -0.5135 34 1 1.6583 2.1326 -0.0004 35 1 4.1205 2.1325 0.0010 36 1 5.3517 -0.0001 0.0092 37 1 3.7451 -3.2614 0.5152 38 1 5.2866 -2.3715 0.5142 39 1 5.5621 -4.6314 -0.9281 40 1 7.6072 -4.1245 -2.9477 41 1 6.9414 -4.1527 -4.5980 42 1 6.6371 -2.7543 -3.5393 43 1 7.7055 -5.9647 -2.4095 44 1 6.5022 -6.1392 -1.1097 45 1 6.8935 -7.5278 -2.1518 46 1 7.0104 -6.3072 -4.6221 47 1 6.1425 -8.4885 -3.9936 48 1 4.5554 -7.9379 -4.5818 49 1 5.3214 -10.1092 -5.9832 50 1 5.9897 -12.3269 -9.8568 51 1 1.6580 -2.1323 0.0005 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001700414852.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:20:59 Heat of formation + Delta-G solvation = -51.432925 kcal Electronic energy + Delta-G solvation = -29363.551481 eV Core-core repulsion = 25262.474402 eV Total energy + Delta-G solvation = -4101.077079 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.45 seconds Orbital eigenvalues (eV) -40.44225 -39.39226 -38.58927 -37.41044 -34.54189 -33.86111 -33.80070 -32.35118 -31.69454 -31.02964 -29.26156 -28.02338 -27.08503 -26.57785 -24.69101 -23.64187 -22.49300 -21.57702 -20.35312 -19.89049 -19.42074 -18.44085 -17.46273 -16.80926 -16.24348 -16.01293 -15.90616 -15.68161 -15.07925 -15.00965 -14.84421 -14.71607 -14.24055 -13.99926 -13.88624 -13.65500 -13.43753 -13.27010 -13.21933 -13.09769 -12.71293 -12.55554 -12.35633 -12.30589 -12.17754 -12.16022 -12.04078 -11.95506 -11.57984 -11.35888 -11.25908 -11.17619 -11.01597 -10.88567 -10.60834 -10.03885 -9.98135 -9.58212 -9.23080 -9.03519 -8.84165 -8.61304 -8.21368 -8.16480 -6.31646 -3.83205 1.06599 1.15646 2.48530 2.92468 3.00748 3.05978 3.14046 3.54646 3.72726 4.08456 4.13002 4.28416 4.46638 4.59405 4.62484 4.68931 4.75691 4.83048 4.86484 4.90317 5.00339 5.06344 5.13412 5.20911 5.21510 5.28471 5.30020 5.34012 5.39646 5.51869 5.52227 5.58813 5.69299 5.72868 5.78880 5.81016 5.86152 5.90758 5.94901 6.07425 6.20043 6.28692 6.32073 6.34362 6.42502 6.75680 7.02944 7.32375 7.51847 7.57433 8.08347 8.13853 8.58878 8.94365 9.41604 9.81640 10.81471 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.020095 B = 0.001635 C = 0.001594 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1393.034139 B =17118.205335 C =17560.149958 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.086 4.086 3 C -0.122 4.122 4 C -0.115 4.115 5 C -0.111 4.111 6 C -0.061 4.061 7 C -0.104 4.104 8 C 0.513 3.487 9 O -0.526 6.526 10 N -0.728 5.728 11 C 0.154 3.846 12 H 0.096 0.904 13 C -0.163 4.163 14 C 0.078 3.922 15 H 0.082 0.918 16 C -0.189 4.189 17 N -0.658 5.658 18 C 0.049 3.951 19 C 0.449 3.551 20 O -0.563 6.563 21 N -0.590 5.590 22 C -0.305 4.305 23 H 0.120 0.880 24 C 0.041 3.959 25 N -0.881 5.881 26 Si 0.880 3.120 27 H -0.271 1.271 28 H -0.277 1.277 29 H -0.270 1.270 30 C -0.105 4.105 31 H 0.069 0.931 32 H 0.066 0.934 33 H 0.066 0.934 34 H 0.120 0.880 35 H 0.121 0.879 36 H 0.119 0.881 37 H 0.102 0.898 38 H 0.102 0.898 39 H 0.396 0.604 40 H 0.052 0.948 41 H 0.081 0.919 42 H 0.055 0.945 43 H 0.066 0.934 44 H 0.057 0.943 45 H 0.060 0.940 46 H 0.354 0.646 47 H 0.045 0.955 48 H 0.087 0.913 49 H 0.370 0.630 50 H 0.273 0.727 51 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.014 18.011 28.081 33.898 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.086 4.086 3 C -0.140 4.140 4 C -0.133 4.133 5 C -0.129 4.129 6 C -0.062 4.062 7 C -0.143 4.143 8 C 0.298 3.702 9 O -0.401 6.401 10 N -0.382 5.382 11 C 0.049 3.951 12 H 0.114 0.886 13 C -0.221 4.221 14 C -0.033 4.033 15 H 0.100 0.900 16 C -0.248 4.248 17 N -0.291 5.291 18 C -0.084 4.084 19 C 0.235 3.765 20 O -0.445 6.445 21 N -0.230 5.230 22 C -0.434 4.434 23 H 0.137 0.863 24 C -0.162 4.162 25 N -0.521 5.521 26 Si 0.707 3.293 27 H -0.196 1.196 28 H -0.202 1.202 29 H -0.196 1.196 30 C -0.123 4.123 31 H 0.087 0.913 32 H 0.085 0.915 33 H 0.085 0.915 34 H 0.138 0.862 35 H 0.139 0.861 36 H 0.137 0.863 37 H 0.120 0.880 38 H 0.120 0.880 39 H 0.231 0.769 40 H 0.071 0.929 41 H 0.100 0.900 42 H 0.074 0.926 43 H 0.085 0.915 44 H 0.076 0.924 45 H 0.079 0.921 46 H 0.175 0.825 47 H 0.063 0.937 48 H 0.106 0.894 49 H 0.203 0.797 50 H 0.084 0.916 51 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -6.487 19.142 26.415 33.261 hybrid contribution 0.246 -2.014 1.619 2.596 sum -6.241 17.129 28.035 33.441 Atomic orbital electron populations 1.20793 0.91208 1.02946 1.02174 1.19873 0.96057 0.93101 0.99582 1.21019 0.94306 0.97451 1.01240 1.21072 0.94308 0.97875 1.00065 1.20949 0.99626 0.92025 1.00334 1.19227 0.93493 0.93559 0.99872 1.20693 1.02227 0.96379 0.95048 1.20488 0.77632 0.80931 0.91125 1.90761 1.49995 1.53249 1.46085 1.46238 1.58665 1.24177 1.09147 1.20867 0.99579 0.92855 0.81767 0.88633 1.22171 0.96629 1.00801 1.02516 1.21727 0.98496 0.94533 0.88562 0.90000 1.22617 1.00217 1.02207 0.99758 1.60010 1.25482 1.20913 1.22717 1.21738 1.01465 0.89197 0.96001 1.19693 0.85068 0.83040 0.88691 1.90571 1.45669 1.50128 1.58140 1.42203 1.55046 1.11409 1.14343 1.19435 1.37088 0.98908 0.87956 0.86262 1.25039 0.97795 0.97182 0.96147 1.69623 1.46427 1.20703 1.15345 0.86667 0.80452 0.81869 0.80342 1.19595 1.20202 1.19582 1.20845 0.93350 0.97644 1.00499 0.91254 0.91532 0.91473 0.86246 0.86093 0.86338 0.88023 0.88014 0.76860 0.92915 0.90037 0.92571 0.91536 0.92431 0.92054 0.82465 0.93666 0.89434 0.79722 0.91613 0.86309 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.74 10.01 36.01 0.36 -0.38 16 2 C -0.09 -0.76 5.88 -104.62 -0.62 -1.38 16 3 C -0.12 -1.04 9.70 -39.59 -0.38 -1.42 16 4 C -0.12 -0.99 10.05 -39.59 -0.40 -1.38 16 5 C -0.11 -1.01 9.70 -39.58 -0.38 -1.39 16 6 C -0.06 -0.56 4.37 -104.62 -0.46 -1.02 16 7 C -0.10 -0.71 5.83 -29.04 -0.17 -0.88 16 8 C 0.51 5.29 7.79 -10.99 -0.09 5.20 16 9 O -0.53 -7.96 15.70 5.55 0.09 -7.87 16 10 N -0.73 -6.21 4.99 -53.81 -0.27 -6.48 16 11 C 0.15 1.71 2.63 -67.93 -0.18 1.53 16 12 H 0.10 1.36 7.58 -51.93 -0.39 0.97 16 13 C -0.16 -1.87 8.86 37.16 0.33 -1.54 16 14 C 0.08 0.82 2.64 -67.72 -0.18 0.64 16 15 H 0.08 0.83 7.80 -51.93 -0.40 0.43 16 16 C -0.19 -1.54 8.68 37.15 0.32 -1.22 16 17 N -0.66 -9.55 5.23 -108.00 -0.56 -10.12 16 18 C 0.05 0.77 5.97 -4.98 -0.03 0.74 16 19 C 0.45 10.03 7.82 -10.98 -0.09 9.95 16 20 O -0.56 -14.98 15.78 5.55 0.09 -14.89 16 21 N -0.59 -13.92 5.09 -10.97 -0.06 -13.98 16 22 C -0.31 -8.62 10.16 -14.94 -0.15 -8.77 16 23 H 0.12 3.86 7.39 -52.49 -0.39 3.47 16 24 C 0.04 1.13 5.50 -17.47 -0.10 1.03 16 25 N -0.88 -25.72 13.96 55.50 0.77 -24.94 16 26 Si 0.88 19.24 27.74 -169.99 -4.71 14.53 16 27 H -0.27 -5.82 7.11 56.52 0.40 -5.42 16 28 H -0.28 -6.07 7.11 56.52 0.40 -5.67 16 29 H -0.27 -5.34 6.52 56.52 0.37 -4.97 16 30 C -0.11 -0.98 9.36 -39.58 -0.37 -1.35 16 31 H 0.07 0.37 8.14 -51.93 -0.42 -0.06 16 32 H 0.07 0.38 8.09 -51.93 -0.42 -0.04 16 33 H 0.07 0.43 8.09 -51.93 -0.42 0.01 16 34 H 0.12 0.77 8.06 -52.48 -0.42 0.35 16 35 H 0.12 0.78 8.06 -52.49 -0.42 0.36 16 36 H 0.12 0.89 8.06 -52.49 -0.42 0.47 16 37 H 0.10 0.48 8.09 -51.93 -0.42 0.06 16 38 H 0.10 0.47 8.08 -51.93 -0.42 0.05 16 39 H 0.40 2.20 6.58 -40.82 -0.27 1.94 16 40 H 0.05 0.51 6.57 -51.93 -0.34 0.17 16 41 H 0.08 1.07 7.13 -51.93 -0.37 0.70 16 42 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 43 H 0.07 0.56 6.55 -51.93 -0.34 0.22 16 44 H 0.06 0.33 6.29 -51.93 -0.33 0.00 16 45 H 0.06 0.53 7.45 -51.93 -0.39 0.14 16 46 H 0.35 5.35 7.39 -39.29 -0.29 5.06 16 47 H 0.05 0.61 7.44 -51.93 -0.39 0.23 16 48 H 0.09 1.25 8.06 -51.93 -0.42 0.83 16 49 H 0.37 7.62 5.76 -40.82 -0.24 7.39 16 50 H 0.27 7.36 8.31 -40.82 -0.34 7.02 16 51 H 0.12 0.95 8.06 -52.49 -0.42 0.53 16 LS Contribution 415.29 15.07 6.26 6.26 Total: -1.00 -35.73 415.29 -8.90 -44.63 By element: Atomic # 1 Polarization: 22.44 SS G_CDS: -7.93 Total: 14.51 kcal Atomic # 6 Polarization: 0.94 SS G_CDS: -2.57 Total: -1.63 kcal Atomic # 7 Polarization: -55.41 SS G_CDS: -0.11 Total: -55.52 kcal Atomic # 8 Polarization: -22.94 SS G_CDS: 0.17 Total: -22.77 kcal Atomic # 14 Polarization: 19.24 SS G_CDS: -4.71 Total: 14.53 kcal Total LS contribution 6.26 Total: 6.26 kcal Total: -35.73 -8.90 -44.63 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001700414852.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.804 kcal (2) G-P(sol) polarization free energy of solvation -35.726 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.531 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.902 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.629 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.433 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.45 seconds