Wall clock time and date at job start Wed Apr 1 2020 04:20:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38256 * 120.00405 * 2 1 4 4 C 1.38205 * 120.00512 * 179.97438 * 3 2 1 5 5 C 1.38260 * 119.99844 * 359.81062 * 4 3 2 6 6 C 1.38221 * 119.99825 * 0.42033 * 5 4 3 7 7 C 1.50697 * 120.00011 * 179.81013 * 6 5 4 8 8 C 1.50699 * 109.47104 * 269.72460 * 7 6 5 9 9 O 1.21287 * 119.99956 * 359.97438 * 8 7 6 10 10 N 1.34777 * 120.00179 * 180.02562 * 8 7 6 11 11 C 1.46500 * 120.00075 * 179.97438 * 10 8 7 12 12 H 1.09002 * 109.47092 * 324.99806 * 11 10 8 13 13 C 1.52997 * 109.47007 * 84.99755 * 11 10 8 14 14 C 1.53000 * 109.47023 * 204.99547 * 11 10 8 15 15 H 1.09002 * 109.46642 * 65.00310 * 14 11 10 16 16 C 1.52993 * 109.47345 * 305.00398 * 14 11 10 17 17 N 1.46900 * 109.47017 * 184.99920 * 14 11 10 18 18 C 1.46900 * 110.99922 * 205.00378 * 17 14 11 19 19 C 1.50700 * 109.46923 * 180.02562 * 18 17 14 20 20 O 1.21286 * 120.00454 * 359.97438 * 19 18 17 21 21 N 1.34781 * 119.99996 * 179.97438 * 19 18 17 22 22 C 1.37101 * 120.00375 * 179.97438 * 21 19 18 23 23 H 1.08000 * 119.99688 * 359.97438 * 22 21 19 24 24 C 1.38939 * 120.00272 * 179.97438 * 22 21 19 25 25 N 1.31418 * 120.00197 * 180.02562 * 24 22 21 26 26 Si 1.86800 * 120.00041 * 0.02562 * 24 22 21 27 27 H 1.48496 * 109.47260 * 89.99968 * 26 24 22 28 28 H 1.48502 * 109.47185 * 210.00141 * 26 24 22 29 29 H 1.48505 * 109.47077 * 330.00004 * 26 24 22 30 30 C 1.38211 * 119.99827 * 179.97438 * 2 1 3 31 31 H 1.09001 * 109.47629 * 270.02659 * 1 2 3 32 32 H 1.09004 * 109.46795 * 30.02181 * 1 2 3 33 33 H 1.09001 * 109.47343 * 150.02238 * 1 2 3 34 34 H 1.08006 * 119.99475 * 359.97438 * 3 2 1 35 35 H 1.07997 * 120.00613 * 180.02562 * 4 3 2 36 36 H 1.07996 * 120.00461 * 180.22858 * 5 4 3 37 37 H 1.08999 * 109.46955 * 149.72516 * 7 6 5 38 38 H 1.08999 * 109.47007 * 29.72357 * 7 6 5 39 39 H 0.96997 * 119.99651 * 359.97438 * 10 8 7 40 40 H 1.09002 * 109.47153 * 60.00089 * 13 11 10 41 41 H 1.08998 * 109.47533 * 179.97438 * 13 11 10 42 42 H 1.08996 * 109.47853 * 300.00060 * 13 11 10 43 43 H 1.09002 * 109.47179 * 299.99584 * 16 14 11 44 44 H 1.08993 * 109.47639 * 59.99724 * 16 14 11 45 45 H 1.09004 * 109.47135 * 179.97438 * 16 14 11 46 46 H 1.00896 * 110.99965 * 81.04923 * 17 14 11 47 47 H 1.08997 * 109.47306 * 299.99760 * 18 17 14 48 48 H 1.08998 * 109.47445 * 59.99939 * 18 17 14 49 49 H 0.97001 * 119.99660 * 359.97438 * 21 19 18 50 50 H 0.96996 * 120.00276 * 180.02562 * 25 24 22 51 51 H 1.08002 * 120.00236 * 0.02562 * 30 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1984 1.1973 0.0000 4 6 3.5804 1.1973 0.0005 5 6 4.2717 -0.0001 0.0050 6 6 3.5806 -1.1971 0.0002 7 6 4.3340 -2.5022 0.0008 8 6 4.5848 -2.9380 -1.4198 9 8 4.1900 -2.2563 -2.3420 10 7 5.2468 -4.0860 -1.6657 11 6 5.4900 -4.5100 -3.0467 12 1 4.6430 -4.2225 -3.6696 13 6 6.7601 -3.8369 -3.5706 14 6 5.6629 -6.0296 -3.0907 15 1 4.7280 -6.5101 -2.8019 16 6 6.7707 -6.4452 -2.1208 17 7 6.0249 -6.4420 -4.4534 18 6 5.6338 -7.8358 -4.7029 19 6 6.0208 -8.2223 -6.1072 20 8 6.5681 -7.4160 -6.8292 21 7 5.7588 -9.4642 -6.5608 22 6 6.1104 -9.8157 -7.8384 23 1 6.5970 -9.0974 -8.4816 24 6 5.8408 -11.0960 -8.3059 25 7 6.1783 -11.4332 -9.5304 26 14 4.9985 -12.3383 -7.1937 27 1 3.5267 -12.2354 -7.3621 28 1 5.4435 -13.7081 -7.5552 29 1 5.3557 -12.0588 -5.7796 30 6 2.1980 -1.1970 0.0005 31 1 -0.3634 0.0005 1.0276 32 1 -0.3633 0.8898 -0.5142 33 1 -0.3634 -0.8902 -0.5135 34 1 1.6583 2.1326 -0.0004 35 1 4.1205 2.1325 0.0010 36 1 5.3517 -0.0001 0.0092 37 1 3.7451 -3.2614 0.5152 38 1 5.2866 -2.3715 0.5142 39 1 5.5621 -4.6314 -0.9281 40 1 7.6072 -4.1245 -2.9477 41 1 6.9414 -4.1527 -4.5980 42 1 6.6371 -2.7543 -3.5393 43 1 7.7055 -5.9647 -2.4095 44 1 6.5022 -6.1392 -1.1097 45 1 6.8935 -7.5278 -2.1518 46 1 7.0104 -6.3072 -4.6221 47 1 6.1425 -8.4885 -3.9936 48 1 4.5554 -7.9379 -4.5818 49 1 5.3214 -10.1092 -5.9832 50 1 5.9897 -12.3269 -9.8568 51 1 1.6580 -2.1323 0.0005 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001700414852.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:20:57 Heat of formation + Delta-G solvation = -77.998870 kcal Electronic energy + Delta-G solvation = -29364.703467 eV Core-core repulsion = 25262.474402 eV Total energy + Delta-G solvation = -4102.229065 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 2.40 seconds Orbital eigenvalues (eV) -41.21999 -40.39625 -39.93851 -38.50198 -36.08541 -35.34118 -34.42616 -33.74580 -32.97612 -32.00769 -30.12414 -28.68243 -28.06481 -27.63917 -25.90483 -25.01900 -23.14655 -22.29111 -21.31923 -21.05698 -20.74929 -20.30344 -18.35621 -17.60412 -17.44523 -17.15452 -16.84594 -16.64976 -16.53176 -16.03564 -15.76590 -15.64842 -15.28253 -15.06741 -14.98728 -14.75514 -14.50034 -14.40486 -14.05552 -13.99314 -13.88546 -13.76796 -13.39450 -13.20958 -13.15867 -13.05251 -12.90006 -12.75542 -12.72127 -12.54253 -12.40497 -11.97918 -11.94463 -11.84897 -11.82740 -11.78823 -11.50916 -10.91659 -10.44755 -10.24329 -10.06236 -9.66985 -9.46010 -9.29640 -8.40788 -6.01982 0.43391 0.52208 1.30127 1.36673 1.45202 1.71390 1.96687 2.14704 2.23767 2.78067 2.94317 3.15583 3.47200 3.69367 3.79504 3.90343 3.92465 4.05862 4.11366 4.16274 4.25043 4.25988 4.40869 4.43095 4.47727 4.49110 4.54513 4.62177 4.63067 4.66626 4.76395 4.82283 4.83802 4.88833 4.98937 4.99624 5.06716 5.20698 5.25510 5.31693 5.43719 5.52313 5.57214 5.58680 5.66854 5.72316 5.91405 6.05992 6.16328 6.39819 6.60156 6.64162 6.88788 7.36184 7.40404 7.97571 8.76946 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.020095 B = 0.001635 C = 0.001594 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1393.034139 B =17118.205335 C =17560.149958 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.101 4.101 3 C -0.136 4.136 4 C -0.127 4.127 5 C -0.129 4.129 6 C -0.075 4.075 7 C -0.095 4.095 8 C 0.511 3.489 9 O -0.582 6.582 10 N -0.710 5.710 11 C 0.160 3.840 12 H 0.058 0.942 13 C -0.156 4.156 14 C 0.085 3.915 15 H 0.095 0.905 16 C -0.184 4.184 17 N -0.682 5.682 18 C 0.065 3.935 19 C 0.447 3.553 20 O -0.615 6.615 21 N -0.591 5.591 22 C -0.330 4.330 23 H 0.053 0.947 24 C -0.016 4.016 25 N -0.935 5.935 26 Si 0.967 3.033 27 H -0.259 1.259 28 H -0.275 1.275 29 H -0.228 1.228 30 C -0.124 4.124 31 H 0.082 0.918 32 H 0.071 0.929 33 H 0.065 0.935 34 H 0.135 0.865 35 H 0.137 0.863 36 H 0.129 0.871 37 H 0.130 0.870 38 H 0.131 0.869 39 H 0.415 0.585 40 H 0.075 0.925 41 H 0.058 0.942 42 H 0.038 0.962 43 H 0.062 0.938 44 H 0.088 0.912 45 H 0.064 0.936 46 H 0.348 0.652 47 H 0.083 0.917 48 H 0.113 0.887 49 H 0.390 0.610 50 H 0.279 0.721 51 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.038 16.498 32.834 37.414 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.101 4.101 3 C -0.154 4.154 4 C -0.145 4.145 5 C -0.147 4.147 6 C -0.076 4.076 7 C -0.134 4.134 8 C 0.298 3.702 9 O -0.461 6.461 10 N -0.365 5.365 11 C 0.055 3.945 12 H 0.076 0.924 13 C -0.214 4.214 14 C -0.025 4.025 15 H 0.113 0.887 16 C -0.243 4.243 17 N -0.315 5.315 18 C -0.067 4.067 19 C 0.235 3.765 20 O -0.499 6.499 21 N -0.232 5.232 22 C -0.459 4.459 23 H 0.072 0.928 24 C -0.215 4.215 25 N -0.576 5.576 26 Si 0.786 3.214 27 H -0.183 1.183 28 H -0.201 1.201 29 H -0.151 1.151 30 C -0.142 4.142 31 H 0.101 0.899 32 H 0.090 0.910 33 H 0.084 0.916 34 H 0.153 0.847 35 H 0.155 0.845 36 H 0.147 0.853 37 H 0.148 0.852 38 H 0.149 0.851 39 H 0.254 0.746 40 H 0.094 0.906 41 H 0.077 0.923 42 H 0.057 0.943 43 H 0.081 0.919 44 H 0.107 0.893 45 H 0.083 0.917 46 H 0.168 0.832 47 H 0.101 0.899 48 H 0.131 0.869 49 H 0.226 0.774 50 H 0.088 0.912 51 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -7.502 17.620 31.240 36.643 hybrid contribution 0.615 -1.377 0.051 1.509 sum -6.887 16.243 31.292 35.922 Atomic orbital electron populations 1.20819 0.89862 1.03174 1.03089 1.20229 0.97322 0.93238 0.99291 1.21311 0.94623 0.98183 1.01278 1.21383 0.94685 0.98637 0.99764 1.21235 1.00409 0.92383 1.00691 1.19541 0.93774 0.94636 0.99602 1.20744 1.03923 0.95963 0.92783 1.21130 0.76543 0.80463 0.92020 1.90748 1.52305 1.54962 1.48060 1.46009 1.57962 1.23931 1.08578 1.20584 0.97706 0.93566 0.82690 0.92398 1.22078 0.97867 0.99681 1.01779 1.21716 1.00105 0.93583 0.87107 0.88707 1.22564 0.98817 1.02410 1.00480 1.59941 1.25261 1.20409 1.25896 1.21643 1.03187 0.90497 0.91415 1.21053 0.82702 0.81787 0.90963 1.90552 1.47435 1.51522 1.60431 1.42020 1.55725 1.12566 1.12934 1.19006 1.38504 0.98618 0.89776 0.92846 1.26145 0.97973 0.99336 0.98029 1.69813 1.47904 1.21764 1.18118 0.85344 0.79059 0.77348 0.79613 1.18326 1.20060 1.15112 1.21111 0.93853 0.98233 1.01048 0.89927 0.90977 0.91556 0.84703 0.84533 0.85268 0.85186 0.85125 0.74554 0.90649 0.92269 0.94256 0.91873 0.89313 0.91661 0.83150 0.89920 0.86950 0.77421 0.91174 0.85534 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.37 10.01 71.24 0.71 -0.66 16 2 C -0.10 -1.73 5.88 -19.87 -0.12 -1.85 16 3 C -0.14 -2.25 9.70 22.27 0.22 -2.04 16 4 C -0.13 -2.11 10.05 22.27 0.22 -1.89 16 5 C -0.13 -2.24 9.70 22.27 0.22 -2.02 16 6 C -0.08 -1.29 4.37 -19.86 -0.09 -1.38 16 7 C -0.09 -1.05 5.83 29.10 0.17 -0.88 16 8 C 0.51 9.76 7.79 87.66 0.68 10.44 16 9 O -0.58 -17.84 15.70 -3.05 -0.05 -17.89 16 10 N -0.71 -10.31 4.99 -442.53 -2.21 -12.52 16 11 C 0.16 3.39 2.63 44.99 0.12 3.51 16 12 H 0.06 1.69 7.58 -2.39 -0.02 1.68 16 13 C -0.16 -3.55 8.86 71.98 0.64 -2.92 16 14 C 0.09 1.55 2.64 44.91 0.12 1.67 16 15 H 0.09 1.54 7.80 -2.39 -0.02 1.52 16 16 C -0.18 -2.20 8.68 71.98 0.62 -1.58 16 17 N -0.68 -18.81 5.23 -495.59 -2.59 -21.41 16 18 C 0.06 1.86 5.97 85.56 0.51 2.37 16 19 C 0.45 19.89 7.82 87.66 0.69 20.57 16 20 O -0.62 -34.11 15.78 -3.05 -0.05 -34.16 16 21 N -0.59 -27.54 5.09 -306.99 -1.56 -29.10 16 22 C -0.33 -19.36 10.16 84.04 0.85 -18.51 16 23 H 0.05 3.76 7.39 -2.91 -0.02 3.73 16 24 C -0.02 -0.91 5.50 84.92 0.47 -0.44 16 25 N -0.94 -56.59 13.96 21.66 0.30 -56.29 16 26 Si 0.97 38.38 27.74 68.60 1.90 40.28 16 27 H -0.26 -9.81 7.11 99.48 0.71 -9.10 16 28 H -0.28 -10.87 7.11 99.48 0.71 -10.17 16 29 H -0.23 -7.44 6.52 99.48 0.65 -6.80 16 30 C -0.12 -2.22 9.36 22.27 0.21 -2.01 16 31 H 0.08 0.76 8.14 -2.39 -0.02 0.74 16 32 H 0.07 0.77 8.09 -2.38 -0.02 0.75 16 33 H 0.07 0.80 8.09 -2.39 -0.02 0.78 16 34 H 0.14 1.65 8.06 -2.91 -0.02 1.63 16 35 H 0.14 1.67 8.06 -2.91 -0.02 1.65 16 36 H 0.13 1.81 8.06 -2.91 -0.02 1.78 16 37 H 0.13 0.72 8.09 -2.39 -0.02 0.70 16 38 H 0.13 0.70 8.08 -2.39 -0.02 0.68 16 39 H 0.42 2.80 6.58 -92.71 -0.61 2.19 16 40 H 0.07 1.34 6.57 -2.39 -0.02 1.33 16 41 H 0.06 1.61 7.13 -2.39 -0.02 1.60 16 42 H 0.04 1.01 8.14 -2.39 -0.02 0.99 16 43 H 0.06 0.84 6.55 -2.39 -0.02 0.82 16 44 H 0.09 0.52 6.29 -2.39 -0.02 0.50 16 45 H 0.06 0.79 7.45 -2.38 -0.02 0.78 16 46 H 0.35 10.31 7.39 -89.70 -0.66 9.65 16 47 H 0.08 1.82 7.44 -2.39 -0.02 1.80 16 48 H 0.11 2.74 8.06 -2.39 -0.02 2.72 16 49 H 0.39 14.85 5.76 -92.71 -0.53 14.31 16 50 H 0.28 15.40 8.31 -92.71 -0.77 14.63 16 51 H 0.13 1.90 8.06 -2.91 -0.02 1.88 16 Total: -1.00 -87.01 415.29 1.09 -85.92 By element: Atomic # 1 Polarization: 43.68 SS G_CDS: -0.90 Total: 42.78 kcal Atomic # 6 Polarization: -3.86 SS G_CDS: 6.24 Total: 2.39 kcal Atomic # 7 Polarization: -113.26 SS G_CDS: -6.06 Total: -119.32 kcal Atomic # 8 Polarization: -51.95 SS G_CDS: -0.10 Total: -52.05 kcal Atomic # 14 Polarization: 38.38 SS G_CDS: 1.90 Total: 40.28 kcal Total: -87.01 1.09 -85.92 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001700414852.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.922 kcal (2) G-P(sol) polarization free energy of solvation -87.009 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.088 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.089 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.921 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.999 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.40 seconds