Wall clock time and date at job start Wed Apr 1 2020 04:17:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38255 * 120.00177 * 2 1 4 4 C 1.38213 * 119.99938 * 180.02562 * 3 2 1 5 5 C 1.38251 * 119.99935 * 359.76246 * 4 3 2 6 6 C 1.38217 * 120.00201 * 0.47025 * 5 4 3 7 7 C 1.50695 * 120.00136 * 179.78715 * 6 5 4 8 8 C 1.50697 * 109.47069 * 269.72618 * 7 6 5 9 9 O 1.21280 * 120.00146 * 359.97438 * 8 7 6 10 10 N 1.34779 * 120.00414 * 180.02562 * 8 7 6 11 11 C 1.46493 * 120.00389 * 179.97438 * 10 8 7 12 12 C 1.52998 * 109.47120 * 175.21292 * 11 10 8 13 13 H 1.09000 * 109.47823 * 294.94772 * 12 11 10 14 14 C 1.53001 * 109.47300 * 174.94363 * 12 11 10 15 15 N 1.46904 * 109.47208 * 54.94682 * 12 11 10 16 16 C 1.46894 * 111.00361 * 192.91027 * 15 12 11 17 17 C 1.46904 * 110.99879 * 68.95386 * 15 12 11 18 18 C 1.50698 * 109.46978 * 190.00263 * 17 15 12 19 19 O 1.21290 * 120.00077 * 0.02562 * 18 17 15 20 20 N 1.34777 * 119.99583 * 180.02562 * 18 17 15 21 21 C 1.37104 * 119.99452 * 179.97438 * 20 18 17 22 22 H 1.07998 * 120.00258 * 359.97438 * 21 20 18 23 23 C 1.38948 * 119.99476 * 179.97438 * 21 20 18 24 24 N 1.31410 * 120.00343 * 0.02562 * 23 21 20 25 25 Si 1.86800 * 119.99709 * 180.02562 * 23 21 20 26 26 H 1.48499 * 109.47340 * 60.00420 * 25 23 21 27 27 H 1.48499 * 109.47176 * 180.02562 * 25 23 21 28 28 H 1.48501 * 109.47097 * 300.00149 * 25 23 21 29 29 C 1.38217 * 119.99773 * 179.97438 * 2 1 3 30 30 H 1.09000 * 109.47041 * 270.02169 * 1 2 3 31 31 H 1.08996 * 109.47126 * 30.01886 * 1 2 3 32 32 H 1.08997 * 109.47556 * 150.02009 * 1 2 3 33 33 H 1.08005 * 119.99704 * 359.97438 * 3 2 1 34 34 H 1.08003 * 119.99818 * 179.97438 * 4 3 2 35 35 H 1.08002 * 120.00167 * 180.25168 * 5 4 3 36 36 H 1.08997 * 109.47147 * 149.72577 * 7 6 5 37 37 H 1.09001 * 109.47015 * 29.72342 * 7 6 5 38 38 H 0.97010 * 119.99695 * 359.97438 * 10 8 7 39 39 H 1.09004 * 109.46887 * 55.21801 * 11 10 8 40 40 H 1.08994 * 109.47773 * 295.21684 * 11 10 8 41 41 H 1.09002 * 109.46973 * 60.00329 * 14 12 11 42 42 H 1.08999 * 109.47468 * 300.00622 * 14 12 11 43 43 H 1.08999 * 109.47593 * 180.02562 * 14 12 11 44 44 H 1.08997 * 109.47400 * 64.17032 * 16 15 12 45 45 H 1.08995 * 109.47553 * 184.17174 * 16 15 12 46 46 H 1.09005 * 109.47048 * 304.17511 * 16 15 12 47 47 H 1.08998 * 109.46912 * 310.00478 * 17 15 12 48 48 H 1.09002 * 109.46712 * 70.00443 * 17 15 12 49 49 H 0.96994 * 120.00159 * 359.97438 * 20 18 17 50 50 H 0.96999 * 120.00128 * 179.97438 * 24 23 21 51 51 H 1.08000 * 119.99765 * 359.97438 * 29 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1973 0.0000 4 6 3.5804 1.1972 -0.0005 5 6 4.2716 -0.0001 0.0039 6 6 3.5806 -1.1971 -0.0010 7 6 4.3340 -2.5021 -0.0010 8 6 4.5843 -2.9377 -1.4218 9 8 4.1892 -2.2557 -2.3436 10 7 5.2462 -4.0856 -1.6682 11 6 5.4889 -4.5092 -3.0494 12 6 6.3553 -5.7702 -3.0512 13 1 7.3394 -5.5357 -2.6452 14 6 6.5043 -6.2846 -4.4844 15 7 5.7180 -6.8035 -2.2240 16 6 6.6486 -7.9065 -1.9497 17 6 4.4870 -7.2979 -2.8550 18 6 3.7360 -8.1663 -1.8789 19 8 4.1820 -8.3545 -0.7668 20 7 2.5686 -8.7339 -2.2418 21 6 1.8856 -9.5244 -1.3539 22 1 2.2832 -9.6926 -0.3640 23 6 0.6819 -10.1091 -1.7278 24 7 0.1984 -9.9048 -2.9325 25 14 -0.2491 -11.1856 -0.5179 26 1 -0.5957 -10.3903 0.6873 27 1 -1.4931 -11.6859 -1.1560 28 1 0.6018 -12.3369 -0.1233 29 6 2.1980 -1.1970 0.0005 30 1 -0.3633 0.0004 1.0277 31 1 -0.3633 0.8898 -0.5141 32 1 -0.3634 -0.8901 -0.5135 33 1 1.6583 2.1326 -0.0004 34 1 4.1205 2.1326 -0.0010 35 1 5.3517 -0.0002 0.0076 36 1 3.7453 -3.2616 0.5135 37 1 5.2868 -2.3716 0.5122 38 1 5.5618 -4.6313 -0.9309 39 1 6.0039 -3.7138 -3.5882 40 1 4.5375 -4.7214 -3.5370 41 1 6.9773 -5.5180 -5.0983 42 1 5.5203 -6.5192 -4.8904 43 1 7.1212 -7.1833 -4.4857 44 1 7.4846 -7.5374 -1.3556 45 1 6.1299 -8.6911 -1.3989 46 1 7.0220 -8.3094 -2.8912 47 1 3.8625 -6.4528 -3.1447 48 1 4.7415 -7.8817 -3.7397 49 1 2.2118 -8.5831 -3.1310 50 1 -0.6418 -10.3133 -3.1936 51 1 1.6580 -2.1323 0.0014 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001700474246.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:17:57 Heat of formation + Delta-G solvation = -49.210218 kcal Electronic energy + Delta-G solvation = -30362.057658 eV Core-core repulsion = 26261.076963 eV Total energy + Delta-G solvation = -4100.980695 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.74 seconds Orbital eigenvalues (eV) -40.10568 -39.28647 -38.59347 -37.21027 -34.29863 -33.78875 -33.54769 -32.09076 -31.26347 -30.95501 -28.36589 -28.00838 -26.95189 -26.01542 -24.89107 -23.80911 -22.24214 -21.18855 -20.47193 -19.86143 -18.87605 -17.81697 -16.97154 -16.65883 -16.58275 -16.05097 -15.79258 -15.24729 -14.87269 -14.76986 -14.60151 -14.45852 -14.08340 -13.95671 -13.75181 -13.55531 -13.35816 -13.22431 -13.04943 -12.88362 -12.74440 -12.39984 -12.26240 -12.06737 -11.93549 -11.89987 -11.74045 -11.49241 -11.27115 -11.17331 -11.10697 -11.02740 -10.87412 -10.77959 -10.45570 -10.22733 -9.80501 -9.47892 -8.89736 -8.80684 -8.62275 -8.47389 -8.00108 -7.89961 -6.42725 -3.83792 1.29195 1.37611 2.78003 3.18544 3.24710 3.27161 3.29112 3.78154 3.88759 3.98574 4.22712 4.57729 4.69719 4.71772 4.82743 4.91686 5.05611 5.08584 5.10758 5.19754 5.20640 5.25230 5.26128 5.43782 5.47068 5.47640 5.49374 5.51111 5.58359 5.61911 5.73935 5.76139 5.78277 5.89572 5.94213 5.99751 6.03333 6.08837 6.14507 6.26481 6.40296 6.47581 6.51999 6.58114 6.58992 6.97948 7.20424 7.30787 7.53562 7.70292 8.04601 8.38468 8.60154 9.16589 9.53196 10.04589 10.74898 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.008073 B = 0.002805 C = 0.002223 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3467.324214 B = 9978.261477 C =12594.349164 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.086 4.086 3 C -0.125 4.125 4 C -0.118 4.118 5 C -0.113 4.113 6 C -0.057 4.057 7 C -0.105 4.105 8 C 0.514 3.486 9 O -0.542 6.542 10 N -0.715 5.715 11 C 0.130 3.870 12 C 0.065 3.935 13 H 0.088 0.912 14 C -0.186 4.186 15 N -0.512 5.512 16 C 0.021 3.979 17 C 0.041 3.959 18 C 0.444 3.556 19 O -0.579 6.579 20 N -0.563 5.563 21 C -0.299 4.299 22 H 0.102 0.898 23 C 0.023 3.977 24 N -0.901 5.901 25 Si 0.930 3.070 26 H -0.273 1.273 27 H -0.284 1.284 28 H -0.274 1.274 29 C -0.104 4.104 30 H 0.069 0.931 31 H 0.064 0.936 32 H 0.068 0.932 33 H 0.118 0.882 34 H 0.119 0.881 35 H 0.118 0.882 36 H 0.106 0.894 37 H 0.101 0.899 38 H 0.411 0.589 39 H 0.070 0.930 40 H 0.065 0.935 41 H 0.062 0.938 42 H 0.065 0.935 43 H 0.062 0.938 44 H 0.060 0.940 45 H 0.095 0.905 46 H 0.017 0.983 47 H 0.087 0.913 48 H 0.051 0.949 49 H 0.391 0.609 50 H 0.272 0.728 51 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.430 17.039 1.622 19.541 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.086 4.086 3 C -0.143 4.143 4 C -0.136 4.136 5 C -0.131 4.131 6 C -0.057 4.057 7 C -0.145 4.145 8 C 0.299 3.701 9 O -0.419 6.419 10 N -0.367 5.367 11 C 0.006 3.994 12 C -0.044 4.044 13 H 0.106 0.894 14 C -0.245 4.245 15 N -0.235 5.235 16 C -0.127 4.127 17 C -0.090 4.090 18 C 0.229 3.771 19 O -0.464 6.464 20 N -0.200 5.200 21 C -0.429 4.429 22 H 0.120 0.880 23 C -0.179 4.179 24 N -0.543 5.543 25 Si 0.757 3.243 26 H -0.199 1.199 27 H -0.210 1.210 28 H -0.199 1.199 29 C -0.122 4.122 30 H 0.088 0.912 31 H 0.083 0.917 32 H 0.087 0.913 33 H 0.136 0.864 34 H 0.137 0.863 35 H 0.136 0.864 36 H 0.124 0.876 37 H 0.120 0.880 38 H 0.247 0.753 39 H 0.088 0.912 40 H 0.083 0.917 41 H 0.081 0.919 42 H 0.084 0.916 43 H 0.081 0.919 44 H 0.078 0.922 45 H 0.114 0.886 46 H 0.036 0.964 47 H 0.105 0.895 48 H 0.069 0.931 49 H 0.225 0.775 50 H 0.082 0.918 51 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges 9.133 17.519 2.066 19.865 hybrid contribution -0.361 -1.173 -0.603 1.367 sum 8.772 16.346 1.463 18.609 Atomic orbital electron populations 1.20795 0.91238 1.02890 1.02228 1.19880 0.96059 0.93084 0.99571 1.20982 0.94273 0.97335 1.01672 1.21033 0.94290 0.97739 1.00528 1.20925 0.99516 0.92011 1.00643 1.19272 0.93520 0.93636 0.99276 1.20685 1.02280 0.96346 0.95168 1.20459 0.77700 0.80805 0.91096 1.90709 1.50666 1.54325 1.46250 1.45835 1.58100 1.23447 1.09311 1.21358 0.99651 0.94908 0.83513 1.22026 0.97875 0.92018 0.92524 0.89401 1.22404 1.02911 1.01915 0.97264 1.61781 1.04850 1.12645 1.44244 1.22538 0.95868 0.94835 0.99410 1.21921 0.92251 0.98992 0.95833 1.19724 0.83474 0.84879 0.88980 1.90476 1.68707 1.65033 1.22158 1.41869 1.18931 1.43421 1.15769 1.19629 1.02302 1.23860 0.97109 0.87982 1.25258 0.97252 0.98485 0.96899 1.69602 1.21329 1.44882 1.18444 0.85934 0.78502 0.79958 0.79922 1.19872 1.20983 1.19938 1.20932 0.93485 0.97820 0.99983 0.91230 0.91674 0.91345 0.86392 0.86272 0.86432 0.87568 0.88049 0.75255 0.91217 0.91681 0.91893 0.91634 0.91863 0.92159 0.88606 0.96433 0.89487 0.93122 0.77545 0.91799 0.86048 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.07 10.01 36.01 0.36 -0.71 16 2 C -0.09 -1.00 5.88 -104.62 -0.62 -1.62 16 3 C -0.12 -1.33 9.70 -39.58 -0.38 -1.72 16 4 C -0.12 -1.25 10.05 -39.59 -0.40 -1.64 16 5 C -0.11 -1.29 9.70 -39.58 -0.38 -1.67 16 6 C -0.06 -0.70 4.37 -104.63 -0.46 -1.16 16 7 C -0.10 -1.17 5.83 -29.04 -0.17 -1.33 16 8 C 0.51 7.14 7.82 -10.99 -0.09 7.05 16 9 O -0.54 -9.55 16.03 5.56 0.09 -9.46 16 10 N -0.71 -9.03 5.41 -60.30 -0.33 -9.35 16 11 C 0.13 1.61 4.94 -4.05 -0.02 1.59 16 12 C 0.06 0.74 2.48 -67.71 -0.17 0.57 16 13 H 0.09 0.89 8.04 -51.93 -0.42 0.47 16 14 C -0.19 -1.91 8.41 37.16 0.31 -1.59 16 15 N -0.51 -7.50 3.80 -236.33 -0.90 -8.40 16 16 C 0.02 0.31 9.09 60.06 0.55 0.85 16 17 C 0.04 0.70 4.30 -4.97 -0.02 0.68 16 18 C 0.44 10.06 7.43 -10.99 -0.08 9.98 16 19 O -0.58 -14.75 13.95 5.55 0.08 -14.67 16 20 N -0.56 -14.02 5.29 -10.96 -0.06 -14.08 16 21 C -0.30 -8.21 9.68 -14.93 -0.14 -8.35 16 22 H 0.10 2.92 7.16 -52.49 -0.38 2.54 16 23 C 0.02 0.61 5.50 -17.47 -0.10 0.51 16 24 N -0.90 -24.43 13.05 55.50 0.72 -23.71 16 25 Si 0.93 20.88 29.55 -169.99 -5.02 15.86 16 26 H -0.27 -6.10 7.11 56.52 0.40 -5.70 16 27 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 28 H -0.27 -6.10 7.11 56.52 0.40 -5.69 16 29 C -0.10 -1.33 9.36 -39.58 -0.37 -1.70 16 30 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 31 H 0.06 0.53 8.09 -51.93 -0.42 0.11 16 32 H 0.07 0.65 8.09 -51.93 -0.42 0.23 16 33 H 0.12 0.99 8.06 -52.48 -0.42 0.57 16 34 H 0.12 0.97 8.06 -52.48 -0.42 0.54 16 35 H 0.12 1.12 8.06 -52.49 -0.42 0.70 16 36 H 0.11 1.11 8.09 -51.93 -0.42 0.69 16 37 H 0.10 0.85 8.08 -51.93 -0.42 0.43 16 38 H 0.41 4.91 8.06 -40.82 -0.33 4.58 16 39 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 40 H 0.06 0.91 6.68 -51.93 -0.35 0.57 16 41 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 42 H 0.06 0.72 6.54 -51.93 -0.34 0.39 16 43 H 0.06 0.65 6.73 -51.93 -0.35 0.30 16 44 H 0.06 0.76 8.14 -51.93 -0.42 0.33 16 45 H 0.10 1.75 5.79 -51.93 -0.30 1.45 16 46 H 0.02 0.23 6.61 -51.93 -0.34 -0.12 16 47 H 0.09 1.44 6.33 -51.93 -0.33 1.11 16 48 H 0.05 0.80 6.83 -51.93 -0.35 0.45 16 49 H 0.39 9.45 7.90 -40.82 -0.32 9.13 16 50 H 0.27 7.01 8.31 -40.82 -0.34 6.67 16 51 H 0.12 1.51 8.06 -52.49 -0.42 1.09 16 LS Contribution 415.07 15.07 6.25 6.25 Total: -1.00 -32.82 415.07 -9.34 -42.16 By element: Atomic # 1 Polarization: 23.67 SS G_CDS: -8.00 Total: 15.67 kcal Atomic # 6 Polarization: 1.91 SS G_CDS: -2.18 Total: -0.27 kcal Atomic # 7 Polarization: -54.98 SS G_CDS: -0.56 Total: -55.54 kcal Atomic # 8 Polarization: -24.30 SS G_CDS: 0.17 Total: -24.14 kcal Atomic # 14 Polarization: 20.88 SS G_CDS: -5.02 Total: 15.86 kcal Total LS contribution 6.25 Total: 6.25 kcal Total: -32.82 -9.34 -42.16 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001700474246.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.049 kcal (2) G-P(sol) polarization free energy of solvation -32.820 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.870 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.341 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.161 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.210 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.74 seconds