Wall clock time and date at job start Wed Apr 1 2020 04:26:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38263 * 119.99715 * 2 1 4 4 C 1.38216 * 119.99563 * 179.73814 * 3 2 1 5 5 C 1.38261 * 119.99974 * 0.55614 * 4 3 2 6 6 C 1.38213 * 119.99742 * 359.69335 * 5 4 3 7 7 C 1.38209 * 120.00017 * 180.26633 * 2 1 3 8 8 C 1.50699 * 119.99831 * 0.02562 * 7 2 1 9 9 H 1.08997 * 109.47167 * 5.02997 * 8 7 2 10 10 C 1.53000 * 109.46907 * 125.03060 * 8 7 2 11 11 C 1.50698 * 109.47056 * 245.03141 * 8 7 2 12 12 O 1.21281 * 120.00260 * 0.02562 * 11 8 7 13 13 N 1.34780 * 120.00156 * 180.02562 * 11 8 7 14 14 C 1.46504 * 119.99655 * 359.97438 * 13 11 8 15 15 C 1.46492 * 120.00081 * 180.02562 * 13 11 8 16 16 C 1.53006 * 109.47346 * 89.99881 * 15 13 11 17 17 N 1.46896 * 109.47523 * 179.97438 * 16 15 13 18 18 C 1.46893 * 111.00270 * 179.97438 * 17 16 15 19 19 C 1.50697 * 109.47231 * 179.97438 * 18 17 16 20 20 O 1.21292 * 120.00090 * 359.97438 * 19 18 17 21 21 N 1.34779 * 120.00240 * 179.97438 * 19 18 17 22 22 C 1.37100 * 120.00291 * 180.02562 * 21 19 18 23 23 H 1.07999 * 119.99696 * 359.97438 * 22 21 19 24 24 C 1.38950 * 120.00145 * 180.02562 * 22 21 19 25 25 N 1.31415 * 119.99888 * 359.97438 * 24 22 21 26 26 Si 1.86793 * 120.00144 * 179.97438 * 24 22 21 27 27 H 1.48496 * 109.47446 * 89.99559 * 26 24 22 28 28 H 1.48503 * 109.47309 * 210.00003 * 26 24 22 29 29 H 1.48504 * 109.47161 * 329.99616 * 26 24 22 30 30 H 1.08999 * 109.47276 * 263.81239 * 1 2 3 31 31 H 1.08996 * 109.46939 * 143.80454 * 1 2 3 32 32 H 1.09002 * 109.46876 * 23.80831 * 1 2 3 33 33 H 1.08004 * 120.00228 * 359.97438 * 3 2 1 34 34 H 1.08003 * 119.99831 * 180.26640 * 4 3 2 35 35 H 1.07994 * 119.99911 * 179.72148 * 5 4 3 36 36 H 1.08000 * 119.99850 * 180.02562 * 6 5 4 37 37 H 1.09007 * 109.46809 * 179.97438 * 10 8 7 38 38 H 1.08995 * 109.47551 * 300.00140 * 10 8 7 39 39 H 1.09006 * 109.47282 * 60.00210 * 10 8 7 40 40 H 1.08999 * 109.47240 * 90.00143 * 14 13 11 41 41 H 1.09003 * 109.46639 * 210.00628 * 14 13 11 42 42 H 1.09003 * 109.47289 * 329.99524 * 14 13 11 43 43 H 1.09007 * 109.47378 * 209.99440 * 15 13 11 44 44 H 1.08997 * 109.47740 * 329.99896 * 15 13 11 45 45 H 1.08999 * 109.47115 * 300.00007 * 16 15 13 46 46 H 1.09004 * 109.46995 * 59.99974 * 16 15 13 47 47 H 1.00899 * 111.00043 * 56.04202 * 17 16 15 48 48 H 1.09001 * 109.46862 * 300.00018 * 18 17 16 49 49 H 1.08998 * 109.47347 * 60.00304 * 18 17 16 50 50 H 0.96998 * 119.99924 * 0.02562 * 21 19 18 51 51 H 0.96996 * 119.99937 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1974 0.0000 4 6 3.5804 1.1974 0.0055 5 6 4.2717 0.0000 -0.0007 6 6 3.5806 -1.1969 -0.0059 7 6 2.1981 -1.1969 -0.0056 8 6 1.4445 -2.5020 -0.0122 9 1 0.3764 -2.3043 -0.1018 10 6 1.9071 -3.3519 -1.1974 11 6 1.7123 -3.2431 1.2723 12 8 2.4426 -2.7591 2.1109 13 7 1.1401 -4.4440 1.4893 14 6 0.2574 -5.0285 0.4766 15 6 1.3999 -5.1642 2.7382 16 6 0.3570 -4.7645 3.7840 17 7 0.6171 -5.4871 5.0362 18 6 -0.3666 -5.1271 6.0659 19 6 -0.0686 -5.8868 7.3328 20 8 0.8706 -6.6532 7.3737 21 7 -0.8458 -5.7147 8.4205 22 6 -0.5743 -6.4054 9.5732 23 1 0.2620 -7.0878 9.6096 24 6 -1.3758 -6.2284 10.6944 25 7 -2.3938 -5.3984 10.6499 26 14 -1.0065 -7.1701 12.2647 27 1 -0.0777 -6.3778 13.1102 28 1 -2.2700 -7.4093 13.0074 29 1 -0.3780 -8.4720 11.9250 30 1 -0.3634 -0.1108 1.0217 31 1 -0.3633 -0.8293 -0.6069 32 1 -0.3633 0.9402 -0.4149 33 1 1.6583 2.1328 -0.0004 34 1 4.1204 2.1327 0.0098 35 1 5.3517 0.0001 -0.0010 36 1 4.1206 -2.1322 -0.0103 37 1 1.3624 -4.2960 -1.2019 38 1 1.7135 -2.8158 -2.1265 39 1 2.9753 -3.5496 -1.1078 40 1 0.8454 -5.6368 -0.2105 41 1 -0.4919 -5.6523 0.9642 42 1 -0.2384 -4.2311 -0.0771 43 1 1.3405 -6.2376 2.5578 44 1 2.3954 -4.9116 3.1031 45 1 0.4163 -3.6911 3.9645 46 1 -0.6387 -5.0171 3.4192 47 1 1.5577 -5.3205 5.3611 48 1 -0.3116 -4.0563 6.2624 49 1 -1.3675 -5.3815 5.7171 50 1 -1.5971 -5.1021 8.3877 51 1 -2.9535 -5.2751 11.4324 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001713666571.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:26:46 Heat of formation + Delta-G solvation = -42.280531 kcal Electronic energy + Delta-G solvation = -29805.671092 eV Core-core repulsion = 25704.990890 eV Total energy + Delta-G solvation = -4100.680201 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 2.91 seconds Orbital eigenvalues (eV) -40.87381 -39.24009 -38.25406 -36.37414 -35.26283 -34.42326 -33.76537 -32.92325 -31.22192 -30.36025 -29.19180 -27.29749 -27.06218 -26.18507 -24.84990 -23.90400 -22.54724 -21.89033 -21.04871 -19.42870 -19.06706 -17.87103 -17.45410 -16.90689 -16.41014 -16.16261 -15.77164 -15.49011 -15.20758 -15.02594 -14.57425 -14.45761 -14.12516 -14.02931 -13.77717 -13.72660 -13.47281 -13.34861 -13.25528 -13.08146 -12.92257 -12.80281 -12.65579 -12.22107 -12.18129 -12.06730 -11.88297 -11.84872 -11.49728 -11.48057 -11.17001 -11.09454 -10.99127 -10.94075 -10.37654 -10.19963 -9.88897 -9.48930 -8.98094 -8.94575 -8.80057 -8.43438 -8.06026 -7.93905 -6.39642 -3.80383 1.10304 1.21136 2.42517 2.71562 3.19610 3.27953 3.34197 3.54489 3.93253 4.14486 4.17016 4.26883 4.44004 4.54804 4.64265 4.65909 4.76043 4.83175 4.90963 4.97613 4.99916 5.00993 5.16019 5.19343 5.22680 5.24649 5.29675 5.30999 5.35823 5.39357 5.49902 5.51726 5.52453 5.70081 5.76620 5.83276 5.87737 5.89378 5.91635 6.01022 6.22535 6.26462 6.31362 6.32875 6.40151 6.79320 7.13156 7.20031 7.57304 7.65647 7.97869 8.08469 8.63487 9.19911 9.56461 10.07991 10.78182 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.016623 B = 0.001751 C = 0.001685 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1683.989081 B =15983.986561 C =16609.590026 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.079 4.079 3 C -0.123 4.123 4 C -0.116 4.116 5 C -0.127 4.127 6 C -0.084 4.084 7 C -0.066 4.066 8 C -0.075 4.075 9 H 0.108 0.892 10 C -0.154 4.154 11 C 0.517 3.483 12 O -0.524 6.524 13 N -0.615 5.615 14 C 0.074 3.926 15 C 0.117 3.883 16 C 0.046 3.954 17 N -0.666 5.666 18 C 0.052 3.948 19 C 0.441 3.559 20 O -0.583 6.583 21 N -0.564 5.564 22 C -0.299 4.299 23 H 0.103 0.897 24 C 0.021 3.979 25 N -0.902 5.902 26 Si 0.931 3.069 27 H -0.278 1.278 28 H -0.284 1.284 29 H -0.269 1.269 30 H 0.072 0.928 31 H 0.068 0.932 32 H 0.067 0.933 33 H 0.121 0.879 34 H 0.120 0.880 35 H 0.120 0.880 36 H 0.118 0.882 37 H 0.076 0.924 38 H 0.068 0.932 39 H 0.062 0.938 40 H 0.062 0.938 41 H 0.076 0.924 42 H 0.072 0.928 43 H 0.089 0.911 44 H 0.084 0.916 45 H 0.030 0.970 46 H 0.070 0.930 47 H 0.351 0.649 48 H 0.044 0.956 49 H 0.085 0.915 50 H 0.392 0.608 51 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.167 10.696 -29.419 31.579 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.079 4.079 3 C -0.141 4.141 4 C -0.134 4.134 5 C -0.145 4.145 6 C -0.102 4.102 7 C -0.066 4.066 8 C -0.096 4.096 9 H 0.126 0.874 10 C -0.211 4.211 11 C 0.304 3.696 12 O -0.399 6.399 13 N -0.349 5.349 14 C -0.069 4.069 15 C -0.005 4.005 16 C -0.084 4.084 17 N -0.299 5.299 18 C -0.080 4.080 19 C 0.227 3.773 20 O -0.467 6.467 21 N -0.201 5.201 22 C -0.428 4.428 23 H 0.121 0.879 24 C -0.180 4.180 25 N -0.544 5.544 26 Si 0.758 3.242 27 H -0.204 1.204 28 H -0.209 1.209 29 H -0.194 1.194 30 H 0.090 0.910 31 H 0.087 0.913 32 H 0.086 0.914 33 H 0.139 0.861 34 H 0.138 0.862 35 H 0.138 0.862 36 H 0.136 0.864 37 H 0.094 0.906 38 H 0.088 0.912 39 H 0.081 0.919 40 H 0.080 0.920 41 H 0.095 0.905 42 H 0.091 0.909 43 H 0.107 0.893 44 H 0.102 0.898 45 H 0.048 0.952 46 H 0.088 0.912 47 H 0.170 0.830 48 H 0.062 0.938 49 H 0.104 0.896 50 H 0.225 0.775 51 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 4.712 9.904 -28.977 30.983 hybrid contribution -0.198 0.887 1.129 1.450 sum 4.514 10.791 -27.847 30.204 Atomic orbital electron populations 1.20874 0.91431 1.02688 1.02578 1.19714 0.95855 0.92607 0.99724 1.20965 0.94301 0.97197 1.01654 1.21120 0.94312 0.98010 0.99985 1.21090 0.99835 0.92467 1.01092 1.20871 0.93427 0.98048 0.97848 1.19094 0.93569 0.92581 1.01360 1.20357 1.01928 0.93320 0.94041 0.87411 1.22077 1.02548 0.99996 0.96477 1.20532 0.79944 0.80793 0.88331 1.90748 1.36568 1.66278 1.46315 1.47797 1.48314 1.19782 1.18987 1.22017 0.93998 0.99205 0.91716 1.21417 0.99740 0.96582 0.82809 1.22253 0.99284 0.96030 0.90880 1.60032 1.07343 1.59478 1.03087 1.21651 0.96923 0.97484 0.91974 1.19795 0.85903 0.86881 0.84735 1.90520 1.31760 1.40402 1.84003 1.41861 1.27911 1.40016 1.10289 1.19710 1.13405 1.21631 0.88066 0.87901 1.25272 0.95657 0.97450 0.99666 1.69616 1.17284 1.36236 1.31236 0.85844 0.77627 0.79818 0.80916 1.20428 1.20939 1.19400 0.90978 0.91346 0.91371 0.86145 0.86212 0.86188 0.86443 0.90560 0.91249 0.91861 0.91972 0.90545 0.90917 0.89306 0.89765 0.95198 0.91184 0.82986 0.93849 0.89644 0.77460 0.91896 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.83 9.27 36.01 0.33 -0.49 16 2 C -0.08 -0.74 5.88 -104.62 -0.62 -1.36 16 3 C -0.12 -1.11 9.68 -39.58 -0.38 -1.49 16 4 C -0.12 -1.04 10.05 -39.58 -0.40 -1.44 16 5 C -0.13 -1.21 10.05 -39.58 -0.40 -1.61 16 6 C -0.08 -0.87 8.20 -39.58 -0.32 -1.20 16 7 C -0.07 -0.66 4.32 -104.63 -0.45 -1.11 16 8 C -0.08 -0.62 1.91 -92.93 -0.18 -0.80 16 9 H 0.11 0.71 4.81 -51.93 -0.25 0.46 16 10 C -0.15 -0.90 8.58 37.16 0.32 -0.58 16 11 C 0.52 5.88 6.97 -10.99 -0.08 5.80 16 12 O -0.52 -8.25 14.95 5.56 0.08 -8.17 16 13 N -0.61 -5.94 2.87 -181.57 -0.52 -6.46 16 14 C 0.07 0.42 8.80 59.85 0.53 0.95 16 15 C 0.12 1.37 5.67 -4.04 -0.02 1.34 16 16 C 0.05 0.62 6.01 -3.82 -0.02 0.60 16 17 N -0.67 -11.34 6.13 -115.06 -0.70 -12.04 16 18 C 0.05 0.97 6.17 -4.98 -0.03 0.94 16 19 C 0.44 10.77 7.82 -10.99 -0.09 10.68 16 20 O -0.58 -16.24 15.78 5.55 0.09 -16.15 16 21 N -0.56 -14.67 5.29 -10.96 -0.06 -14.73 16 22 C -0.30 -8.49 9.68 -14.93 -0.14 -8.64 16 23 H 0.10 3.06 7.16 -52.49 -0.38 2.69 16 24 C 0.02 0.57 5.50 -17.47 -0.10 0.48 16 25 N -0.90 -24.92 13.05 55.50 0.72 -24.20 16 26 Si 0.93 21.38 29.55 -169.99 -5.02 16.35 16 27 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 28 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 29 H -0.27 -6.17 7.11 56.52 0.40 -5.77 16 30 H 0.07 0.55 8.14 -51.93 -0.42 0.12 16 31 H 0.07 0.37 6.35 -51.93 -0.33 0.04 16 32 H 0.07 0.38 8.04 -51.93 -0.42 -0.04 16 33 H 0.12 0.84 8.06 -52.48 -0.42 0.41 16 34 H 0.12 0.81 8.06 -52.48 -0.42 0.38 16 35 H 0.12 0.92 8.06 -52.49 -0.42 0.50 16 36 H 0.12 1.18 7.28 -52.49 -0.38 0.80 16 37 H 0.08 0.33 4.53 -51.92 -0.24 0.09 16 38 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 39 H 0.06 0.42 7.12 -51.93 -0.37 0.05 16 40 H 0.06 0.27 6.95 -51.93 -0.36 -0.09 16 41 H 0.08 0.41 8.07 -51.93 -0.42 -0.01 16 42 H 0.07 0.29 6.01 -51.93 -0.31 -0.02 16 43 H 0.09 0.94 8.07 -51.92 -0.42 0.52 16 44 H 0.08 1.13 7.42 -51.93 -0.39 0.75 16 45 H 0.03 0.44 8.14 -51.93 -0.42 0.02 16 46 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 47 H 0.35 6.30 8.43 -39.29 -0.33 5.97 16 48 H 0.04 0.76 8.14 -51.93 -0.42 0.33 16 49 H 0.09 1.44 8.14 -51.93 -0.42 1.02 16 50 H 0.39 9.74 7.90 -40.82 -0.32 9.42 16 51 H 0.27 7.08 8.31 -40.82 -0.34 6.74 16 LS Contribution 412.97 15.07 6.22 6.22 Total: -1.00 -35.15 412.97 -9.09 -44.23 By element: Atomic # 1 Polarization: 20.71 SS G_CDS: -7.85 Total: 12.86 kcal Atomic # 6 Polarization: 4.13 SS G_CDS: -2.05 Total: 2.08 kcal Atomic # 7 Polarization: -56.87 SS G_CDS: -0.56 Total: -57.43 kcal Atomic # 8 Polarization: -24.49 SS G_CDS: 0.17 Total: -24.32 kcal Atomic # 14 Polarization: 21.38 SS G_CDS: -5.02 Total: 16.35 kcal Total LS contribution 6.22 Total: 6.22 kcal Total: -35.15 -9.09 -44.23 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001713666571.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.953 kcal (2) G-P(sol) polarization free energy of solvation -35.146 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.193 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.088 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.234 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.281 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.91 seconds