Wall clock time and date at job start Wed Apr 1 2020 04:26:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38263 * 119.99715 * 2 1 4 4 C 1.38216 * 119.99563 * 179.73814 * 3 2 1 5 5 C 1.38261 * 119.99974 * 0.55614 * 4 3 2 6 6 C 1.38213 * 119.99742 * 359.69335 * 5 4 3 7 7 C 1.38209 * 120.00017 * 180.26633 * 2 1 3 8 8 C 1.50699 * 119.99831 * 0.02562 * 7 2 1 9 9 H 1.08997 * 109.47167 * 5.02997 * 8 7 2 10 10 C 1.53000 * 109.46907 * 125.03060 * 8 7 2 11 11 C 1.50698 * 109.47056 * 245.03141 * 8 7 2 12 12 O 1.21281 * 120.00260 * 0.02562 * 11 8 7 13 13 N 1.34780 * 120.00156 * 180.02562 * 11 8 7 14 14 C 1.46504 * 119.99655 * 359.97438 * 13 11 8 15 15 C 1.46492 * 120.00081 * 180.02562 * 13 11 8 16 16 C 1.53006 * 109.47346 * 89.99881 * 15 13 11 17 17 N 1.46896 * 109.47523 * 179.97438 * 16 15 13 18 18 C 1.46893 * 111.00270 * 179.97438 * 17 16 15 19 19 C 1.50697 * 109.47231 * 179.97438 * 18 17 16 20 20 O 1.21292 * 120.00090 * 359.97438 * 19 18 17 21 21 N 1.34779 * 120.00240 * 179.97438 * 19 18 17 22 22 C 1.37100 * 120.00291 * 180.02562 * 21 19 18 23 23 H 1.07999 * 119.99696 * 359.97438 * 22 21 19 24 24 C 1.38950 * 120.00145 * 180.02562 * 22 21 19 25 25 N 1.31415 * 119.99888 * 359.97438 * 24 22 21 26 26 Si 1.86793 * 120.00144 * 179.97438 * 24 22 21 27 27 H 1.48496 * 109.47446 * 89.99559 * 26 24 22 28 28 H 1.48503 * 109.47309 * 210.00003 * 26 24 22 29 29 H 1.48504 * 109.47161 * 329.99616 * 26 24 22 30 30 H 1.08999 * 109.47276 * 263.81239 * 1 2 3 31 31 H 1.08996 * 109.46939 * 143.80454 * 1 2 3 32 32 H 1.09002 * 109.46876 * 23.80831 * 1 2 3 33 33 H 1.08004 * 120.00228 * 359.97438 * 3 2 1 34 34 H 1.08003 * 119.99831 * 180.26640 * 4 3 2 35 35 H 1.07994 * 119.99911 * 179.72148 * 5 4 3 36 36 H 1.08000 * 119.99850 * 180.02562 * 6 5 4 37 37 H 1.09007 * 109.46809 * 179.97438 * 10 8 7 38 38 H 1.08995 * 109.47551 * 300.00140 * 10 8 7 39 39 H 1.09006 * 109.47282 * 60.00210 * 10 8 7 40 40 H 1.08999 * 109.47240 * 90.00143 * 14 13 11 41 41 H 1.09003 * 109.46639 * 210.00628 * 14 13 11 42 42 H 1.09003 * 109.47289 * 329.99524 * 14 13 11 43 43 H 1.09007 * 109.47378 * 209.99440 * 15 13 11 44 44 H 1.08997 * 109.47740 * 329.99896 * 15 13 11 45 45 H 1.08999 * 109.47115 * 300.00007 * 16 15 13 46 46 H 1.09004 * 109.46995 * 59.99974 * 16 15 13 47 47 H 1.00899 * 111.00043 * 56.04202 * 17 16 15 48 48 H 1.09001 * 109.46862 * 300.00018 * 18 17 16 49 49 H 1.08998 * 109.47347 * 60.00304 * 18 17 16 50 50 H 0.96998 * 119.99924 * 0.02562 * 21 19 18 51 51 H 0.96996 * 119.99937 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1974 0.0000 4 6 3.5804 1.1974 0.0055 5 6 4.2717 0.0000 -0.0007 6 6 3.5806 -1.1969 -0.0059 7 6 2.1981 -1.1969 -0.0056 8 6 1.4445 -2.5020 -0.0122 9 1 0.3764 -2.3043 -0.1018 10 6 1.9071 -3.3519 -1.1974 11 6 1.7123 -3.2431 1.2723 12 8 2.4426 -2.7591 2.1109 13 7 1.1401 -4.4440 1.4893 14 6 0.2574 -5.0285 0.4766 15 6 1.3999 -5.1642 2.7382 16 6 0.3570 -4.7645 3.7840 17 7 0.6171 -5.4871 5.0362 18 6 -0.3666 -5.1271 6.0659 19 6 -0.0686 -5.8868 7.3328 20 8 0.8706 -6.6532 7.3737 21 7 -0.8458 -5.7147 8.4205 22 6 -0.5743 -6.4054 9.5732 23 1 0.2620 -7.0878 9.6096 24 6 -1.3758 -6.2284 10.6944 25 7 -2.3938 -5.3984 10.6499 26 14 -1.0065 -7.1701 12.2647 27 1 -0.0777 -6.3778 13.1102 28 1 -2.2700 -7.4093 13.0074 29 1 -0.3780 -8.4720 11.9250 30 1 -0.3634 -0.1108 1.0217 31 1 -0.3633 -0.8293 -0.6069 32 1 -0.3633 0.9402 -0.4149 33 1 1.6583 2.1328 -0.0004 34 1 4.1204 2.1327 0.0098 35 1 5.3517 0.0001 -0.0010 36 1 4.1206 -2.1322 -0.0103 37 1 1.3624 -4.2960 -1.2019 38 1 1.7135 -2.8158 -2.1265 39 1 2.9753 -3.5496 -1.1078 40 1 0.8454 -5.6368 -0.2105 41 1 -0.4919 -5.6523 0.9642 42 1 -0.2384 -4.2311 -0.0771 43 1 1.3405 -6.2376 2.5578 44 1 2.3954 -4.9116 3.1031 45 1 0.4163 -3.6911 3.9645 46 1 -0.6387 -5.0171 3.4192 47 1 1.5577 -5.3205 5.3611 48 1 -0.3116 -4.0563 6.2624 49 1 -1.3675 -5.3815 5.7171 50 1 -1.5971 -5.1021 8.3877 51 1 -2.9535 -5.2751 11.4324 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001713666571.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:26:42 Heat of formation + Delta-G solvation = -66.238568 kcal Electronic energy + Delta-G solvation = -29806.709990 eV Core-core repulsion = 25704.990890 eV Total energy + Delta-G solvation = -4101.719100 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.43 seconds Orbital eigenvalues (eV) -41.63787 -40.22519 -39.92367 -37.50600 -36.35266 -35.85455 -35.12771 -33.55459 -33.29594 -31.31444 -30.06935 -28.12833 -27.67533 -27.52219 -26.01384 -25.14911 -23.58244 -22.65799 -21.81217 -21.13436 -20.07280 -19.86437 -18.24556 -17.88641 -17.63385 -17.15656 -17.05031 -16.59107 -16.38680 -16.03452 -15.97710 -15.64110 -15.39622 -15.15827 -14.87163 -14.68802 -14.53039 -14.13948 -14.10192 -13.98186 -13.82319 -13.61780 -13.48897 -13.43183 -13.22460 -13.16847 -12.92182 -12.83232 -12.75576 -12.49989 -12.43621 -12.38202 -12.12535 -12.10145 -11.80918 -11.56616 -11.52982 -10.75111 -10.41877 -10.04321 -9.72341 -9.67938 -9.48683 -9.45887 -8.48507 -5.97650 0.41373 0.50789 1.37077 1.40914 1.54029 1.58912 1.92446 2.01336 2.28666 2.83267 2.97753 3.18124 3.47288 3.53111 3.67925 3.89873 4.00683 4.04339 4.08578 4.13955 4.19997 4.25380 4.27258 4.36538 4.44209 4.45357 4.47061 4.54322 4.62703 4.66321 4.75352 4.77199 4.81106 4.81545 4.91669 4.93236 4.96664 5.02327 5.16666 5.26867 5.31278 5.39043 5.45008 5.59033 5.62620 5.72118 5.81105 6.03480 6.13168 6.24004 6.38055 6.57137 7.09878 7.15353 7.52568 8.07677 8.68929 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.016623 B = 0.001751 C = 0.001685 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1683.989081 B =15983.986561 C =16609.590026 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.093 4.093 3 C -0.134 4.134 4 C -0.125 4.125 5 C -0.143 4.143 6 C -0.104 4.104 7 C -0.081 4.081 8 C -0.068 4.068 9 H 0.130 0.870 10 C -0.149 4.149 11 C 0.511 3.489 12 O -0.578 6.578 13 N -0.610 5.610 14 C 0.063 3.937 15 C 0.123 3.877 16 C 0.056 3.944 17 N -0.675 5.675 18 C 0.066 3.934 19 C 0.437 3.563 20 O -0.622 6.622 21 N -0.572 5.572 22 C -0.335 4.335 23 H 0.079 0.921 24 C -0.014 4.014 25 N -0.920 5.920 26 Si 0.995 3.005 27 H -0.271 1.271 28 H -0.269 1.269 29 H -0.272 1.272 30 H 0.064 0.936 31 H 0.085 0.915 32 H 0.082 0.918 33 H 0.140 0.860 34 H 0.139 0.861 35 H 0.131 0.869 36 H 0.110 0.890 37 H 0.096 0.904 38 H 0.083 0.917 39 H 0.049 0.951 40 H 0.081 0.919 41 H 0.085 0.915 42 H 0.095 0.905 43 H 0.103 0.897 44 H 0.058 0.942 45 H 0.016 0.984 46 H 0.090 0.910 47 H 0.342 0.658 48 H 0.059 0.941 49 H 0.110 0.890 50 H 0.397 0.603 51 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.379 10.888 -30.926 32.873 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.093 4.093 3 C -0.151 4.151 4 C -0.143 4.143 5 C -0.161 4.161 6 C -0.122 4.122 7 C -0.081 4.081 8 C -0.089 4.089 9 H 0.147 0.853 10 C -0.206 4.206 11 C 0.300 3.700 12 O -0.457 6.457 13 N -0.342 5.342 14 C -0.078 4.078 15 C -0.001 4.001 16 C -0.074 4.074 17 N -0.307 5.307 18 C -0.066 4.066 19 C 0.225 3.775 20 O -0.509 6.509 21 N -0.209 5.209 22 C -0.465 4.465 23 H 0.097 0.903 24 C -0.214 4.214 25 N -0.561 5.561 26 Si 0.819 3.181 27 H -0.197 1.197 28 H -0.194 1.194 29 H -0.197 1.197 30 H 0.082 0.918 31 H 0.104 0.896 32 H 0.101 0.899 33 H 0.158 0.842 34 H 0.157 0.843 35 H 0.149 0.851 36 H 0.128 0.872 37 H 0.115 0.885 38 H 0.102 0.898 39 H 0.068 0.932 40 H 0.099 0.901 41 H 0.103 0.897 42 H 0.114 0.886 43 H 0.121 0.879 44 H 0.077 0.923 45 H 0.034 0.966 46 H 0.108 0.892 47 H 0.160 0.840 48 H 0.077 0.923 49 H 0.128 0.872 50 H 0.231 0.769 51 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 2.875 10.098 -30.534 32.288 hybrid contribution 0.373 0.845 1.552 1.807 sum 3.248 10.943 -28.981 31.148 Atomic orbital electron populations 1.20919 0.89679 1.04316 1.02526 1.20090 0.97332 0.92510 0.99330 1.21316 0.94563 0.98073 1.01197 1.21421 0.94746 0.98549 0.99573 1.21341 1.00655 0.92694 1.01374 1.20995 0.94170 0.98121 0.98893 1.19365 0.93580 0.93758 1.01393 1.20396 1.02933 0.92492 0.93033 0.85258 1.22091 1.01971 1.00692 0.95882 1.21159 0.79067 0.80999 0.88787 1.90723 1.39039 1.67726 1.48258 1.47873 1.48316 1.19200 1.18842 1.22365 0.93919 1.00312 0.91227 1.21231 0.97905 0.97437 0.83490 1.22261 1.00810 0.94744 0.89590 1.60066 1.06495 1.60373 1.03780 1.21523 0.98351 0.97201 0.89531 1.20801 0.84607 0.86214 0.85923 1.90489 1.33279 1.42172 1.84948 1.41925 1.28431 1.40159 1.10383 1.19683 1.13917 1.22942 0.89914 0.90268 1.26084 0.95111 0.97975 1.02218 1.69675 1.17497 1.36538 1.32354 0.84896 0.78005 0.78258 0.76978 1.19687 1.19364 1.19710 0.91756 0.89590 0.89920 0.84244 0.84288 0.85141 0.87205 0.88507 0.89828 0.93181 0.90115 0.89659 0.88634 0.87910 0.92297 0.96590 0.89169 0.84007 0.92347 0.87206 0.76946 0.91230 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.40 9.27 71.24 0.66 -0.74 16 2 C -0.09 -1.65 5.88 -19.86 -0.12 -1.76 16 3 C -0.13 -2.29 9.68 22.27 0.22 -2.07 16 4 C -0.13 -2.19 10.05 22.27 0.22 -1.97 16 5 C -0.14 -2.81 10.05 22.27 0.22 -2.59 16 6 C -0.10 -2.25 8.20 22.27 0.18 -2.06 16 7 C -0.08 -1.58 4.32 -19.87 -0.09 -1.67 16 8 C -0.07 -1.02 1.91 -12.29 -0.02 -1.04 16 9 H 0.13 1.33 4.81 -2.39 -0.01 1.32 16 10 C -0.15 -1.44 8.58 71.98 0.62 -0.82 16 11 C 0.51 11.40 6.97 87.66 0.61 12.01 16 12 O -0.58 -18.94 14.95 -3.03 -0.05 -18.99 16 13 N -0.61 -10.88 2.87 -846.74 -2.43 -13.31 16 14 C 0.06 0.51 8.80 127.77 1.12 1.63 16 15 C 0.12 2.79 5.67 86.38 0.49 3.28 16 16 C 0.06 1.44 6.01 86.31 0.52 1.96 16 17 N -0.68 -22.68 6.13 -517.95 -3.17 -25.85 16 18 C 0.07 2.41 6.17 85.56 0.53 2.94 16 19 C 0.44 21.58 7.82 87.66 0.69 22.26 16 20 O -0.62 -35.59 15.78 -3.07 -0.05 -35.64 16 21 N -0.57 -30.17 5.29 -306.98 -1.62 -31.79 16 22 C -0.34 -19.43 9.68 84.04 0.81 -18.62 16 23 H 0.08 4.89 7.16 -2.91 -0.02 4.87 16 24 C -0.01 -0.77 5.50 84.93 0.47 -0.30 16 25 N -0.92 -50.28 13.05 21.66 0.28 -50.00 16 26 Si 1.00 43.54 29.55 68.60 2.03 45.57 16 27 H -0.27 -11.54 7.11 99.48 0.71 -10.84 16 28 H -0.27 -11.07 7.11 99.48 0.71 -10.36 16 29 H -0.27 -11.96 7.11 99.48 0.71 -11.25 16 30 H 0.06 0.88 8.14 -2.39 -0.02 0.86 16 31 H 0.09 0.68 6.35 -2.39 -0.02 0.66 16 32 H 0.08 0.72 8.04 -2.39 -0.02 0.71 16 33 H 0.14 1.72 8.06 -2.91 -0.02 1.70 16 34 H 0.14 1.76 8.06 -2.91 -0.02 1.73 16 35 H 0.13 2.10 8.06 -2.91 -0.02 2.08 16 36 H 0.11 2.41 7.28 -2.91 -0.02 2.38 16 37 H 0.10 0.51 4.53 -2.38 -0.01 0.49 16 38 H 0.08 0.60 8.14 -2.39 -0.02 0.58 16 39 H 0.05 0.63 7.12 -2.38 -0.02 0.61 16 40 H 0.08 0.40 6.95 -2.39 -0.02 0.39 16 41 H 0.08 0.60 8.07 -2.39 -0.02 0.58 16 42 H 0.10 0.37 6.01 -2.39 -0.01 0.35 16 43 H 0.10 2.04 8.07 -2.38 -0.02 2.02 16 44 H 0.06 1.65 7.42 -2.39 -0.02 1.63 16 45 H 0.02 0.46 8.14 -2.39 -0.02 0.44 16 46 H 0.09 1.97 8.14 -2.39 -0.02 1.95 16 47 H 0.34 12.55 8.43 -89.70 -0.76 11.79 16 48 H 0.06 1.97 8.14 -2.39 -0.02 1.95 16 49 H 0.11 3.48 8.14 -2.39 -0.02 3.46 16 50 H 0.40 19.82 7.90 -92.71 -0.73 19.09 16 51 H 0.28 14.19 8.31 -92.71 -0.77 13.42 16 Total: -1.00 -78.55 412.97 1.59 -76.96 By element: Atomic # 1 Polarization: 43.13 SS G_CDS: -0.53 Total: 42.60 kcal Atomic # 6 Polarization: 3.31 SS G_CDS: 7.13 Total: 10.44 kcal Atomic # 7 Polarization: -114.01 SS G_CDS: -6.95 Total: -120.95 kcal Atomic # 8 Polarization: -54.53 SS G_CDS: -0.09 Total: -54.62 kcal Atomic # 14 Polarization: 43.54 SS G_CDS: 2.03 Total: 45.57 kcal Total: -78.55 1.59 -76.96 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001713666571.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.717 kcal (2) G-P(sol) polarization free energy of solvation -78.551 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.833 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.595 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.956 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.239 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.44 seconds