Wall clock time and date at job start Wed Apr 1 2020 05:49:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.35905 * 117.00397 * 2 1 4 4 C 1.38852 * 119.98739 * 359.97386 * 3 2 1 5 5 C 1.38244 * 120.24104 * 179.97438 * 4 3 2 6 6 C 1.38004 * 120.20858 * 359.76625 * 5 4 3 7 7 C 1.39566 * 119.96321 * 0.53535 * 6 5 4 8 8 C 1.47858 * 120.12104 * 179.72024 * 7 6 5 9 9 O 1.21546 * 120.00140 * 173.72559 * 8 7 6 10 10 N 1.34781 * 119.99580 * 353.73406 * 8 7 6 11 11 C 1.46497 * 119.99876 * 179.97438 * 10 8 7 12 12 C 1.53002 * 109.47422 * 179.97438 * 11 10 8 13 13 N 1.46898 * 109.47353 * 180.02562 * 12 11 10 14 14 C 1.46895 * 110.99755 * 170.00165 * 13 12 11 15 15 C 1.53240 * 109.33940 * 172.74660 * 14 13 12 16 16 N 1.47079 * 108.51956 * 53.82877 * 15 14 13 17 17 C 1.36945 * 120.88028 * 128.79531 * 16 15 14 18 18 H 1.08000 * 119.99740 * 210.28093 * 17 16 15 19 19 C 1.38810 * 119.99853 * 30.27988 * 17 16 15 20 20 N 1.31621 * 120.00034 * 9.52768 * 19 17 16 21 21 Si 1.86802 * 119.99719 * 189.51938 * 19 17 16 22 22 H 1.48496 * 109.47151 * 0.02562 * 21 19 17 23 23 H 1.48504 * 109.46713 * 120.00452 * 21 19 17 24 24 H 1.48494 * 109.47244 * 239.99935 * 21 19 17 25 25 C 1.47079 * 118.23888 * 308.81805 * 16 15 14 26 26 C 1.46905 * 110.99754 * 45.70072 * 13 12 11 27 27 C 1.38458 * 119.98642 * 180.02562 * 3 2 1 28 28 C 1.50695 * 120.10138 * 0.02562 * 27 3 2 29 29 H 1.08998 * 109.47557 * 179.97438 * 1 2 3 30 30 H 1.09003 * 109.47072 * 300.00825 * 1 2 3 31 31 H 1.09004 * 109.47123 * 59.99510 * 1 2 3 32 32 H 1.08004 * 119.87651 * 0.02562 * 4 3 2 33 33 H 1.08002 * 119.89490 * 180.02562 * 5 4 3 34 34 H 1.07991 * 120.02011 * 180.27712 * 6 5 4 35 35 H 0.96998 * 119.99918 * 359.97438 * 10 8 7 36 36 H 1.09002 * 109.47077 * 59.99469 * 11 10 8 37 37 H 1.09002 * 109.47373 * 300.00107 * 11 10 8 38 38 H 1.08997 * 109.46463 * 60.00042 * 12 11 10 39 39 H 1.09007 * 109.46763 * 300.00462 * 12 11 10 40 40 H 1.08998 * 109.49751 * 52.78829 * 14 13 12 41 41 H 1.09007 * 109.49700 * 292.70222 * 14 13 12 42 42 H 1.09004 * 109.63264 * 173.53713 * 15 14 13 43 43 H 1.09000 * 109.62739 * 293.92702 * 15 14 13 44 44 H 0.96999 * 119.99688 * 179.97438 * 20 19 17 45 45 H 1.09004 * 109.62944 * 170.89949 * 25 16 15 46 46 H 1.09004 * 109.62630 * 291.47150 * 25 16 15 47 47 H 1.08994 * 109.49541 * 67.29510 * 26 13 12 48 48 H 1.08998 * 109.51315 * 307.22654 * 26 13 12 49 49 H 1.08997 * 109.47454 * 260.69147 * 28 27 3 50 50 H 1.09001 * 109.47157 * 20.69345 * 28 27 3 51 51 H 1.09002 * 109.47443 * 140.68889 * 28 27 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 1.2896 2.3753 -0.0005 5 6 1.9118 3.6098 0.0000 6 6 3.2894 3.6930 0.0059 7 6 4.0581 2.5282 0.0001 8 6 5.5342 2.6133 0.0002 9 8 6.2013 1.6032 0.1102 10 7 6.1401 3.8111 -0.1215 11 6 7.6026 3.8957 -0.1209 12 6 8.0292 5.3572 -0.2721 13 7 9.4957 5.4419 -0.2721 14 6 9.9452 6.7882 -0.6504 15 6 11.4630 6.8876 -0.4638 16 7 12.0979 5.7882 -1.2065 17 6 13.1204 6.0315 -2.0845 18 1 13.2565 5.3933 -2.9450 19 6 13.9816 7.0985 -1.8684 20 7 13.9369 7.7606 -0.7317 21 14 15.2042 7.5944 -3.1908 22 1 15.0537 6.6982 -4.3652 23 1 14.9455 8.9975 -3.6029 24 1 16.5848 7.4823 -2.6556 25 6 11.6054 4.4208 -0.9815 26 6 10.0821 4.4185 -1.1478 27 6 3.4287 1.2829 -0.0005 28 6 4.2513 0.0203 -0.0017 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3633 0.5140 0.8899 31 1 -0.3633 0.5139 -0.8900 32 1 0.2112 2.3163 -0.0006 33 1 1.3180 4.5119 0.0000 34 1 3.7722 4.6589 0.0108 35 1 5.6077 4.6172 -0.2096 36 1 8.0006 3.3135 -0.9520 37 1 7.9891 3.4993 0.8181 38 1 7.6312 5.9396 0.5589 39 1 7.6427 5.7531 -1.2113 40 1 9.4520 7.5273 -0.0191 41 1 9.6942 6.9755 -1.6945 42 1 11.8177 7.8432 -0.8501 43 1 11.7077 6.8072 0.5953 44 1 14.5390 8.5059 -0.5806 45 1 12.0543 3.7454 -1.7099 46 1 11.8641 4.0998 0.0275 47 1 9.8291 4.6388 -2.1848 48 1 9.6881 3.4388 -0.8775 49 1 4.5894 -0.1941 1.0121 50 1 3.6440 -0.8087 -0.3651 51 1 5.1156 0.1503 -0.6530 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001713811861.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:49:18 Heat of formation + Delta-G solvation = -5.131389 kcal Electronic energy + Delta-G solvation = -29956.078774 eV Core-core repulsion = 25857.009480 eV Total energy + Delta-G solvation = -4099.069294 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -40.97926 -39.70091 -38.31364 -37.41201 -35.56594 -34.07892 -32.94834 -31.57558 -30.94304 -30.04491 -28.60250 -27.96039 -27.13060 -25.91343 -23.88204 -23.35874 -22.45360 -22.01213 -21.08967 -20.70587 -19.10662 -18.62881 -17.05605 -16.79920 -16.57386 -16.26983 -16.14343 -15.91066 -15.63663 -15.00751 -14.63018 -14.54891 -14.24875 -14.10290 -13.83416 -13.66573 -13.46162 -13.30400 -13.27902 -12.96207 -12.71767 -12.54983 -12.40857 -12.36755 -12.00797 -11.65643 -11.56521 -11.38159 -11.32993 -11.30660 -10.96631 -10.75185 -10.44428 -10.27065 -10.03830 -9.83834 -9.76255 -9.59535 -9.38536 -9.04923 -8.56204 -8.50742 -7.86046 -6.59181 -5.76326 -3.23119 0.45582 0.97492 2.61014 2.66472 3.07339 3.37336 3.44858 3.47013 3.47203 4.27191 4.30228 4.44025 4.50707 4.57405 4.60645 4.62295 4.67278 4.86440 4.92481 5.01229 5.09224 5.13773 5.35972 5.42156 5.45206 5.50669 5.51530 5.72337 5.79483 5.83226 5.90896 5.91638 5.93530 6.00809 6.02945 6.08163 6.15795 6.24290 6.27068 6.35913 6.41400 6.55419 6.71728 6.91339 6.96571 7.25827 7.30691 7.55629 7.65574 7.73509 7.82439 8.03770 8.48082 9.24267 9.85508 10.45584 11.32113 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.032148 B = 0.001662 C = 0.001619 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 870.774744 B =16843.763942 C =17285.192190 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.311 6.311 3 C 0.115 3.885 4 C -0.182 4.182 5 C -0.095 4.095 6 C -0.119 4.119 7 C -0.102 4.102 8 C 0.557 3.443 9 O -0.524 6.524 10 N -0.723 5.723 11 C 0.116 3.884 12 C 0.044 3.956 13 N -0.527 5.527 14 C 0.036 3.964 15 C 0.178 3.822 16 N -0.596 5.596 17 C -0.250 4.250 18 H 0.065 0.935 19 C 0.002 3.998 20 N -0.906 5.906 21 Si 0.905 3.095 22 H -0.278 1.278 23 H -0.290 1.290 24 H -0.289 1.289 25 C 0.148 3.852 26 C 0.034 3.966 27 C -0.052 4.052 28 C -0.110 4.110 29 H 0.101 0.899 30 H 0.056 0.944 31 H 0.055 0.945 32 H 0.132 0.868 33 H 0.131 0.869 34 H 0.129 0.871 35 H 0.398 0.602 36 H 0.075 0.925 37 H 0.080 0.920 38 H 0.075 0.925 39 H 0.032 0.968 40 H 0.061 0.939 41 H 0.025 0.975 42 H 0.091 0.909 43 H 0.027 0.973 44 H 0.253 0.747 45 H 0.056 0.944 46 H 0.027 0.973 47 H 0.028 0.972 48 H 0.069 0.931 49 H 0.074 0.926 50 H 0.061 0.939 51 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -30.169 -9.484 2.262 31.705 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.225 6.225 3 C 0.070 3.930 4 C -0.201 4.201 5 C -0.113 4.113 6 C -0.138 4.138 7 C -0.105 4.105 8 C 0.344 3.656 9 O -0.402 6.402 10 N -0.375 5.375 11 C -0.008 4.008 12 C -0.085 4.085 13 N -0.253 5.253 14 C -0.093 4.093 15 C 0.052 3.948 16 N -0.319 5.319 17 C -0.380 4.380 18 H 0.083 0.917 19 C -0.196 4.196 20 N -0.551 5.551 21 Si 0.735 3.265 22 H -0.203 1.203 23 H -0.216 1.216 24 H -0.216 1.216 25 C 0.021 3.979 26 C -0.095 4.095 27 C -0.054 4.054 28 C -0.166 4.166 29 H 0.119 0.881 30 H 0.074 0.926 31 H 0.074 0.926 32 H 0.149 0.851 33 H 0.149 0.851 34 H 0.147 0.853 35 H 0.233 0.767 36 H 0.093 0.907 37 H 0.098 0.902 38 H 0.094 0.906 39 H 0.050 0.950 40 H 0.079 0.921 41 H 0.044 0.956 42 H 0.109 0.891 43 H 0.045 0.955 44 H 0.064 0.936 45 H 0.074 0.926 46 H 0.045 0.955 47 H 0.046 0.954 48 H 0.088 0.912 49 H 0.093 0.907 50 H 0.080 0.920 51 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -29.270 -10.352 2.847 31.177 hybrid contribution -0.350 1.248 -1.447 1.943 sum -29.620 -9.105 1.400 31.019 Atomic orbital electron populations 1.23090 0.78298 1.04166 1.01329 1.86096 1.21297 1.26358 1.88700 1.18686 0.91538 0.84533 0.98248 1.21408 1.00249 0.92294 1.06162 1.20841 0.94272 0.97225 0.98962 1.21204 0.94068 0.97407 1.01117 1.19608 0.93003 0.93099 1.04777 1.18109 0.87075 0.83465 0.76950 1.90770 1.66154 1.34433 1.48811 1.45892 1.08205 1.08787 1.74623 1.21611 0.78174 0.97480 1.03485 1.22259 0.90881 0.94889 1.00468 1.62035 1.04204 1.05775 1.53267 1.22947 1.01109 0.87861 0.97395 1.20883 0.84864 0.93709 0.95314 1.44087 1.38657 1.00117 1.49074 1.19246 1.04472 1.12893 1.01412 0.91733 1.25158 0.97574 1.00446 0.96424 1.69970 1.39602 1.22936 1.22595 0.86181 0.81098 0.78084 0.81167 1.20308 1.21647 1.21614 1.20999 0.89856 0.88544 0.98464 1.22802 0.98580 0.94280 0.93840 1.19357 0.90560 0.95724 0.99713 1.20869 0.99382 0.92636 1.03725 0.88051 0.92584 0.92607 0.85065 0.85074 0.85347 0.76683 0.90681 0.90191 0.90637 0.94959 0.92099 0.95631 0.89094 0.95514 0.93649 0.92581 0.95532 0.95384 0.91237 0.90715 0.91964 0.88975 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.12 9.81 101.05 0.99 1.11 16 2 O -0.31 -2.72 9.39 -19.44 -0.18 -2.90 16 3 C 0.12 1.09 6.65 -39.27 -0.26 0.83 16 4 C -0.18 -1.32 9.03 -39.35 -0.36 -1.68 16 5 C -0.09 -0.64 10.03 -39.66 -0.40 -1.04 16 6 C -0.12 -0.94 9.52 -39.17 -0.37 -1.32 16 7 C -0.10 -1.08 5.87 -104.98 -0.62 -1.70 16 8 C 0.56 6.95 7.71 -12.32 -0.09 6.86 16 9 O -0.52 -8.15 13.40 5.33 0.07 -8.08 16 10 N -0.72 -7.72 5.51 -61.24 -0.34 -8.06 16 11 C 0.12 1.47 4.93 -4.04 -0.02 1.45 16 12 C 0.04 0.58 5.38 -3.82 -0.02 0.56 16 13 N -0.53 -9.21 4.78 -234.32 -1.12 -10.33 16 14 C 0.04 0.69 5.58 -3.70 -0.02 0.67 16 15 C 0.18 4.31 5.36 -3.60 -0.02 4.29 16 16 N -0.60 -15.24 3.03 -172.01 -0.52 -15.76 16 17 C -0.25 -6.95 9.63 -15.06 -0.14 -7.09 16 18 H 0.06 1.76 7.85 -52.49 -0.41 1.35 16 19 C 0.00 0.06 5.09 -17.43 -0.09 -0.03 16 20 N -0.91 -26.34 10.97 55.49 0.61 -25.73 16 21 Si 0.90 21.77 29.56 -169.99 -5.03 16.75 16 22 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 23 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 24 H -0.29 -7.03 7.11 56.52 0.40 -6.62 16 25 C 0.15 3.21 6.69 -3.60 -0.02 3.19 16 26 C 0.03 0.62 5.04 -3.70 -0.02 0.60 16 27 C -0.05 -0.58 5.93 -104.06 -0.62 -1.19 16 28 C -0.11 -1.26 8.49 36.00 0.31 -0.95 16 29 H 0.10 0.28 8.14 -51.93 -0.42 -0.15 16 30 H 0.06 0.19 7.66 -51.93 -0.40 -0.21 16 31 H 0.06 0.19 7.66 -51.93 -0.40 -0.21 16 32 H 0.13 0.62 6.28 -52.48 -0.33 0.29 16 33 H 0.13 0.55 8.06 -52.49 -0.42 0.12 16 34 H 0.13 0.71 6.45 -52.49 -0.34 0.37 16 35 H 0.40 3.12 6.54 -40.82 -0.27 2.85 16 36 H 0.08 1.05 6.18 -51.93 -0.32 0.73 16 37 H 0.08 1.13 8.14 -51.93 -0.42 0.70 16 38 H 0.08 0.90 8.14 -51.93 -0.42 0.48 16 39 H 0.03 0.41 8.08 -51.92 -0.42 -0.01 16 40 H 0.06 1.04 8.11 -51.93 -0.42 0.62 16 41 H 0.03 0.51 8.14 -51.93 -0.42 0.08 16 42 H 0.09 2.43 6.16 -51.93 -0.32 2.11 16 43 H 0.03 0.69 8.14 -51.93 -0.42 0.27 16 44 H 0.25 7.10 8.31 -40.82 -0.34 6.76 16 45 H 0.06 1.17 7.95 -51.93 -0.41 0.76 16 46 H 0.03 0.60 8.14 -51.93 -0.42 0.17 16 47 H 0.03 0.52 8.14 -51.93 -0.42 0.10 16 48 H 0.07 1.11 5.73 -51.93 -0.30 0.82 16 49 H 0.07 0.88 8.14 -51.93 -0.42 0.45 16 50 H 0.06 0.64 7.27 -51.93 -0.38 0.27 16 51 H 0.09 1.19 6.06 -51.93 -0.31 0.87 16 LS Contribution 398.17 15.07 6.00 6.00 Total: -1.00 -33.03 398.17 -10.25 -43.27 By element: Atomic # 1 Polarization: 8.25 SS G_CDS: -7.97 Total: 0.29 kcal Atomic # 6 Polarization: 6.33 SS G_CDS: -1.78 Total: 4.55 kcal Atomic # 7 Polarization: -58.51 SS G_CDS: -1.37 Total: -59.88 kcal Atomic # 8 Polarization: -10.87 SS G_CDS: -0.11 Total: -10.98 kcal Atomic # 14 Polarization: 21.77 SS G_CDS: -5.03 Total: 16.75 kcal Total LS contribution 6.00 Total: 6.00 kcal Total: -33.03 -10.25 -43.27 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001713811861.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.142 kcal (2) G-P(sol) polarization free energy of solvation -33.026 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.116 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.247 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.273 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.131 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds