Wall clock time and date at job start Wed Apr 1 2020 05:49:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.35905 * 117.00397 * 2 1 4 4 C 1.38852 * 119.98739 * 359.97386 * 3 2 1 5 5 C 1.38244 * 120.24104 * 179.97438 * 4 3 2 6 6 C 1.38004 * 120.20858 * 359.76625 * 5 4 3 7 7 C 1.39566 * 119.96321 * 0.53535 * 6 5 4 8 8 C 1.47858 * 120.12104 * 179.72024 * 7 6 5 9 9 O 1.21546 * 120.00140 * 173.72559 * 8 7 6 10 10 N 1.34781 * 119.99580 * 353.73406 * 8 7 6 11 11 C 1.46497 * 119.99876 * 179.97438 * 10 8 7 12 12 C 1.53002 * 109.47422 * 179.97438 * 11 10 8 13 13 N 1.46898 * 109.47353 * 180.02562 * 12 11 10 14 14 C 1.46895 * 110.99755 * 170.00165 * 13 12 11 15 15 C 1.53240 * 109.33940 * 172.74660 * 14 13 12 16 16 N 1.47079 * 108.51956 * 53.82877 * 15 14 13 17 17 C 1.36945 * 120.88028 * 128.79531 * 16 15 14 18 18 H 1.08000 * 119.99740 * 210.28093 * 17 16 15 19 19 C 1.38810 * 119.99853 * 30.27988 * 17 16 15 20 20 N 1.31621 * 120.00034 * 9.52768 * 19 17 16 21 21 Si 1.86802 * 119.99719 * 189.51938 * 19 17 16 22 22 H 1.48496 * 109.47151 * 0.02562 * 21 19 17 23 23 H 1.48504 * 109.46713 * 120.00452 * 21 19 17 24 24 H 1.48494 * 109.47244 * 239.99935 * 21 19 17 25 25 C 1.47079 * 118.23888 * 308.81805 * 16 15 14 26 26 C 1.46905 * 110.99754 * 45.70072 * 13 12 11 27 27 C 1.38458 * 119.98642 * 180.02562 * 3 2 1 28 28 C 1.50695 * 120.10138 * 0.02562 * 27 3 2 29 29 H 1.08998 * 109.47557 * 179.97438 * 1 2 3 30 30 H 1.09003 * 109.47072 * 300.00825 * 1 2 3 31 31 H 1.09004 * 109.47123 * 59.99510 * 1 2 3 32 32 H 1.08004 * 119.87651 * 0.02562 * 4 3 2 33 33 H 1.08002 * 119.89490 * 180.02562 * 5 4 3 34 34 H 1.07991 * 120.02011 * 180.27712 * 6 5 4 35 35 H 0.96998 * 119.99918 * 359.97438 * 10 8 7 36 36 H 1.09002 * 109.47077 * 59.99469 * 11 10 8 37 37 H 1.09002 * 109.47373 * 300.00107 * 11 10 8 38 38 H 1.08997 * 109.46463 * 60.00042 * 12 11 10 39 39 H 1.09007 * 109.46763 * 300.00462 * 12 11 10 40 40 H 1.08998 * 109.49751 * 52.78829 * 14 13 12 41 41 H 1.09007 * 109.49700 * 292.70222 * 14 13 12 42 42 H 1.09004 * 109.63264 * 173.53713 * 15 14 13 43 43 H 1.09000 * 109.62739 * 293.92702 * 15 14 13 44 44 H 0.96999 * 119.99688 * 179.97438 * 20 19 17 45 45 H 1.09004 * 109.62944 * 170.89949 * 25 16 15 46 46 H 1.09004 * 109.62630 * 291.47150 * 25 16 15 47 47 H 1.08994 * 109.49541 * 67.29510 * 26 13 12 48 48 H 1.08998 * 109.51315 * 307.22654 * 26 13 12 49 49 H 1.08997 * 109.47454 * 260.69147 * 28 27 3 50 50 H 1.09001 * 109.47157 * 20.69345 * 28 27 3 51 51 H 1.09002 * 109.47443 * 140.68889 * 28 27 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 1.2896 2.3753 -0.0005 5 6 1.9118 3.6098 0.0000 6 6 3.2894 3.6930 0.0059 7 6 4.0581 2.5282 0.0001 8 6 5.5342 2.6133 0.0002 9 8 6.2013 1.6032 0.1102 10 7 6.1401 3.8111 -0.1215 11 6 7.6026 3.8957 -0.1209 12 6 8.0292 5.3572 -0.2721 13 7 9.4957 5.4419 -0.2721 14 6 9.9452 6.7882 -0.6504 15 6 11.4630 6.8876 -0.4638 16 7 12.0979 5.7882 -1.2065 17 6 13.1204 6.0315 -2.0845 18 1 13.2565 5.3933 -2.9450 19 6 13.9816 7.0985 -1.8684 20 7 13.9369 7.7606 -0.7317 21 14 15.2042 7.5944 -3.1908 22 1 15.0537 6.6982 -4.3652 23 1 14.9455 8.9975 -3.6029 24 1 16.5848 7.4823 -2.6556 25 6 11.6054 4.4208 -0.9815 26 6 10.0821 4.4185 -1.1478 27 6 3.4287 1.2829 -0.0005 28 6 4.2513 0.0203 -0.0017 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3633 0.5140 0.8899 31 1 -0.3633 0.5139 -0.8900 32 1 0.2112 2.3163 -0.0006 33 1 1.3180 4.5119 0.0000 34 1 3.7722 4.6589 0.0108 35 1 5.6077 4.6172 -0.2096 36 1 8.0006 3.3135 -0.9520 37 1 7.9891 3.4993 0.8181 38 1 7.6312 5.9396 0.5589 39 1 7.6427 5.7531 -1.2113 40 1 9.4520 7.5273 -0.0191 41 1 9.6942 6.9755 -1.6945 42 1 11.8177 7.8432 -0.8501 43 1 11.7077 6.8072 0.5953 44 1 14.5390 8.5059 -0.5806 45 1 12.0543 3.7454 -1.7099 46 1 11.8641 4.0998 0.0275 47 1 9.8291 4.6388 -2.1848 48 1 9.6881 3.4388 -0.8775 49 1 4.5894 -0.1941 1.0121 50 1 3.6440 -0.8087 -0.3651 51 1 5.1156 0.1503 -0.6530 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001713811861.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:49:17 Heat of formation + Delta-G solvation = -27.946954 kcal Electronic energy + Delta-G solvation = -29957.068131 eV Core-core repulsion = 25857.009480 eV Total energy + Delta-G solvation = -4100.058651 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -41.69450 -40.52759 -39.75082 -38.09010 -36.93690 -35.53641 -33.67112 -33.30909 -32.07473 -31.47634 -29.90491 -28.45807 -27.98978 -27.39506 -25.33471 -24.46094 -24.01628 -22.87866 -22.22845 -21.55940 -20.79915 -19.34104 -18.73133 -17.73367 -17.37322 -17.09485 -16.89558 -16.75701 -16.63987 -16.54546 -15.96498 -15.80081 -15.50601 -15.29065 -15.17107 -14.92478 -14.71349 -14.55873 -14.32926 -14.13547 -13.90885 -13.28155 -13.21818 -13.14949 -13.05535 -12.96563 -12.95305 -12.66040 -12.60870 -12.41205 -12.26375 -12.02326 -12.01021 -11.91414 -11.89428 -11.51605 -11.42808 -10.78139 -10.60446 -10.25328 -9.83835 -9.28129 -9.17753 -8.62557 -7.86908 -5.37678 -0.23191 0.36808 1.46137 1.47281 1.58130 1.80072 1.89983 2.41573 2.50090 2.77393 3.07934 3.29916 3.63437 3.69213 3.74562 3.78736 4.00829 4.02071 4.06613 4.20279 4.29597 4.34515 4.41992 4.43362 4.43961 4.47547 4.57269 4.63480 4.69181 4.71151 4.75391 4.78980 4.81177 4.86495 4.90871 4.94797 5.04821 5.18010 5.20879 5.22613 5.33116 5.36037 5.38860 5.46032 5.61060 5.67972 5.72970 6.13616 6.21794 6.38757 6.40244 6.48297 7.15014 7.15268 7.83338 8.38824 9.19364 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.032148 B = 0.001662 C = 0.001619 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 870.774744 B =16843.763942 C =17285.192190 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 O -0.334 6.334 3 C 0.105 3.895 4 C -0.176 4.176 5 C -0.089 4.089 6 C -0.116 4.116 7 C -0.119 4.119 8 C 0.553 3.447 9 O -0.565 6.565 10 N -0.708 5.708 11 C 0.126 3.874 12 C 0.053 3.947 13 N -0.540 5.540 14 C 0.053 3.947 15 C 0.184 3.816 16 N -0.615 5.615 17 C -0.265 4.265 18 H 0.065 0.935 19 C -0.049 4.049 20 N -0.936 5.936 21 Si 0.972 3.028 22 H -0.268 1.268 23 H -0.287 1.287 24 H -0.291 1.291 25 C 0.143 3.857 26 C 0.049 3.951 27 C -0.084 4.084 28 C -0.101 4.101 29 H 0.115 0.885 30 H 0.068 0.932 31 H 0.068 0.932 32 H 0.161 0.839 33 H 0.167 0.833 34 H 0.154 0.846 35 H 0.415 0.585 36 H 0.062 0.938 37 H 0.065 0.935 38 H 0.098 0.902 39 H 0.047 0.953 40 H 0.087 0.913 41 H 0.023 0.977 42 H 0.060 0.940 43 H -0.002 1.002 44 H 0.251 0.749 45 H 0.058 0.942 46 H 0.015 0.985 47 H 0.025 0.975 48 H 0.092 0.908 49 H 0.061 0.939 50 H 0.065 0.935 51 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -33.524 -8.417 1.624 34.603 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 O -0.248 6.248 3 C 0.060 3.940 4 C -0.194 4.194 5 C -0.106 4.106 6 C -0.135 4.135 7 C -0.122 4.122 8 C 0.342 3.658 9 O -0.445 6.445 10 N -0.361 5.361 11 C 0.002 3.998 12 C -0.075 4.075 13 N -0.265 5.265 14 C -0.076 4.076 15 C 0.058 3.942 16 N -0.339 5.339 17 C -0.395 4.395 18 H 0.082 0.918 19 C -0.245 4.245 20 N -0.583 5.583 21 Si 0.800 3.200 22 H -0.192 1.192 23 H -0.214 1.214 24 H -0.218 1.218 25 C 0.017 3.983 26 C -0.081 4.081 27 C -0.085 4.085 28 C -0.157 4.157 29 H 0.133 0.867 30 H 0.087 0.913 31 H 0.087 0.913 32 H 0.178 0.822 33 H 0.185 0.815 34 H 0.172 0.828 35 H 0.253 0.747 36 H 0.080 0.920 37 H 0.083 0.917 38 H 0.116 0.884 39 H 0.066 0.934 40 H 0.106 0.894 41 H 0.041 0.959 42 H 0.079 0.921 43 H 0.016 0.984 44 H 0.060 0.940 45 H 0.076 0.924 46 H 0.033 0.967 47 H 0.043 0.957 48 H 0.110 0.890 49 H 0.080 0.920 50 H 0.084 0.916 51 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -32.678 -9.281 2.205 34.042 hybrid contribution 0.584 0.855 -1.202 1.586 sum -32.094 -8.425 1.004 33.197 Atomic orbital electron populations 1.23386 0.76172 1.05646 1.02537 1.86066 1.23570 1.26474 1.88704 1.18802 0.91129 0.85654 0.98456 1.21798 1.01673 0.91635 1.04335 1.21296 0.94004 0.98336 0.96990 1.21520 0.94719 0.97331 0.99944 1.19538 0.91833 0.94142 1.06697 1.18514 0.88025 0.83192 0.76105 1.90753 1.67187 1.35862 1.50735 1.45673 1.07384 1.09144 1.73945 1.21339 0.79375 0.96923 1.02203 1.22250 0.87763 0.95370 1.02152 1.61921 1.07153 1.04488 1.52972 1.22608 0.97466 0.89675 0.97883 1.20658 0.88321 0.92103 0.93099 1.44363 1.38759 1.01826 1.48951 1.19560 1.05090 1.12963 1.01886 0.91753 1.25922 0.99457 1.00615 0.98477 1.70142 1.40411 1.23317 1.24382 0.85142 0.78377 0.77683 0.78841 1.19225 1.21402 1.21841 1.21132 0.92583 0.86828 0.97772 1.22580 0.95798 0.95775 0.93912 1.19438 0.91678 0.95485 1.01947 1.20680 0.98836 0.93783 1.02409 0.86673 0.91296 0.91301 0.82193 0.81543 0.82798 0.74701 0.91969 0.91655 0.88417 0.93436 0.89427 0.95871 0.92121 0.98390 0.93993 0.92397 0.96713 0.95665 0.89046 0.92045 0.91634 0.91066 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.11 9.81 113.37 1.11 1.22 16 2 O -0.33 -5.52 9.39 -92.48 -0.87 -6.39 16 3 C 0.10 1.85 6.65 22.47 0.15 2.00 16 4 C -0.18 -1.98 9.03 22.42 0.20 -1.78 16 5 C -0.09 -0.84 10.03 22.22 0.22 -0.61 16 6 C -0.12 -1.48 9.52 22.53 0.21 -1.27 16 7 C -0.12 -2.42 5.87 -20.10 -0.12 -2.54 16 8 C 0.55 13.63 7.71 86.79 0.67 14.30 16 9 O -0.57 -18.27 13.40 -3.86 -0.05 -18.32 16 10 N -0.71 -13.83 5.51 -465.96 -2.57 -16.40 16 11 C 0.13 3.00 4.93 86.38 0.43 3.43 16 12 C 0.05 1.24 5.38 86.30 0.46 1.70 16 13 N -0.54 -18.02 4.78 -895.26 -4.28 -22.30 16 14 C 0.05 1.97 5.58 86.38 0.48 2.45 16 15 C 0.18 9.09 5.36 86.35 0.46 9.56 16 16 N -0.61 -32.05 3.03 -698.12 -2.12 -34.17 16 17 C -0.26 -14.92 9.63 84.03 0.81 -14.11 16 18 H 0.06 3.55 7.85 -2.91 -0.02 3.52 16 19 C -0.05 -2.80 5.09 84.86 0.43 -2.37 16 20 N -0.94 -55.88 10.97 21.65 0.24 -55.65 16 21 Si 0.97 45.30 29.56 68.60 2.03 47.33 16 22 H -0.27 -11.91 7.11 99.48 0.71 -11.20 16 23 H -0.29 -13.20 7.11 99.48 0.71 -12.50 16 24 H -0.29 -13.61 7.11 99.48 0.71 -12.90 16 25 C 0.14 6.26 6.69 86.35 0.58 6.84 16 26 C 0.05 1.71 5.04 86.38 0.44 2.15 16 27 C -0.08 -1.86 5.93 -19.50 -0.12 -1.98 16 28 C -0.10 -2.48 8.49 71.23 0.60 -1.88 16 29 H 0.12 0.41 8.14 -2.39 -0.02 0.39 16 30 H 0.07 0.28 7.66 -2.39 -0.02 0.26 16 31 H 0.07 0.27 7.66 -2.39 -0.02 0.26 16 32 H 0.16 0.80 6.28 -2.91 -0.02 0.78 16 33 H 0.17 0.42 8.06 -2.91 -0.02 0.40 16 34 H 0.15 1.04 6.45 -2.92 -0.02 1.03 16 35 H 0.41 5.15 6.54 -92.71 -0.61 4.55 16 36 H 0.06 1.67 6.18 -2.39 -0.01 1.65 16 37 H 0.07 1.79 8.14 -2.39 -0.02 1.77 16 38 H 0.10 1.94 8.14 -2.39 -0.02 1.92 16 39 H 0.05 1.03 8.08 -2.38 -0.02 1.01 16 40 H 0.09 2.80 8.11 -2.39 -0.02 2.78 16 41 H 0.02 0.88 8.14 -2.38 -0.02 0.86 16 42 H 0.06 3.34 6.16 -2.38 -0.01 3.33 16 43 H 0.00 -0.11 8.14 -2.39 -0.02 -0.13 16 44 H 0.25 14.40 8.31 -92.71 -0.77 13.63 16 45 H 0.06 2.46 7.95 -2.39 -0.02 2.44 16 46 H 0.01 0.68 8.14 -2.39 -0.02 0.66 16 47 H 0.03 0.91 8.14 -2.39 -0.02 0.89 16 48 H 0.09 2.84 5.73 -2.39 -0.01 2.83 16 49 H 0.06 1.59 8.14 -2.39 -0.02 1.57 16 50 H 0.06 1.47 7.27 -2.39 -0.02 1.45 16 51 H 0.07 2.01 6.06 -2.39 -0.01 2.00 16 Total: -1.00 -75.28 398.17 -0.25 -75.52 By element: Atomic # 1 Polarization: 12.91 SS G_CDS: 0.34 Total: 13.25 kcal Atomic # 6 Polarization: 10.09 SS G_CDS: 7.03 Total: 17.12 kcal Atomic # 7 Polarization: -119.79 SS G_CDS: -8.72 Total: -128.51 kcal Atomic # 8 Polarization: -23.79 SS G_CDS: -0.92 Total: -24.71 kcal Atomic # 14 Polarization: 45.30 SS G_CDS: 2.03 Total: 47.33 kcal Total: -75.28 -0.25 -75.52 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001713811861.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.576 kcal (2) G-P(sol) polarization free energy of solvation -75.276 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.700 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.247 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.523 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.947 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds