Wall clock time and date at job start Wed Apr 1 2020 04:18:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38260 * 119.99837 * 2 1 4 4 C 1.38221 * 119.99924 * 180.02562 * 3 2 1 5 5 C 1.38256 * 119.99741 * 0.02562 * 4 3 2 6 6 C 1.50705 * 119.99371 * 179.97438 * 5 4 3 7 7 C 1.38211 * 120.00342 * 0.02562 * 5 4 3 8 8 C 1.50698 * 119.99886 * 179.97438 * 7 5 4 9 9 C 1.50706 * 109.47266 * 84.99735 * 8 7 5 10 10 O 1.21288 * 119.99707 * 359.97438 * 9 8 7 11 11 N 1.34775 * 119.99969 * 179.97438 * 9 8 7 12 12 C 1.46498 * 119.99673 * 179.97438 * 11 9 8 13 13 C 1.53000 * 109.47043 * 179.97438 * 12 11 9 14 14 H 1.08999 * 109.47446 * 295.00641 * 13 12 11 15 15 C 1.52995 * 109.47146 * 174.99892 * 13 12 11 16 16 N 1.46906 * 109.46965 * 55.00259 * 13 12 11 17 17 C 1.46898 * 110.99888 * 204.99952 * 16 13 12 18 18 C 1.50705 * 109.46661 * 180.02562 * 17 16 13 19 19 O 1.21288 * 120.00125 * 359.97438 * 18 17 16 20 20 N 1.34775 * 119.99549 * 179.97438 * 18 17 16 21 21 C 1.37103 * 120.00062 * 179.97438 * 20 18 17 22 22 H 1.08003 * 119.99229 * 0.02562 * 21 20 18 23 23 C 1.38942 * 120.00207 * 179.97438 * 21 20 18 24 24 N 1.31411 * 119.99885 * 0.02562 * 23 21 20 25 25 Si 1.86804 * 120.00123 * 180.02562 * 23 21 20 26 26 H 1.48494 * 109.47090 * 89.99727 * 25 23 21 27 27 H 1.48497 * 109.47239 * 210.00393 * 25 23 21 28 28 H 1.48506 * 109.46789 * 329.99864 * 25 23 21 29 29 C 1.38215 * 120.00208 * 180.28127 * 2 1 3 30 30 H 1.09001 * 109.47022 * 89.99533 * 1 2 3 31 31 H 1.09005 * 109.46874 * 209.99889 * 1 2 3 32 32 H 1.09001 * 109.47087 * 329.99676 * 1 2 3 33 33 H 1.08001 * 120.00296 * 0.02562 * 3 2 1 34 34 H 1.07995 * 119.99640 * 179.97438 * 4 3 2 35 35 H 1.09005 * 109.46830 * 270.02351 * 6 5 4 36 36 H 1.08994 * 109.47371 * 30.02361 * 6 5 4 37 37 H 1.08997 * 109.46802 * 150.02698 * 6 5 4 38 38 H 1.08994 * 109.47221 * 324.99394 * 8 7 5 39 39 H 1.09001 * 109.46957 * 204.99225 * 8 7 5 40 40 H 0.96995 * 120.00100 * 0.02562 * 11 9 8 41 41 H 1.09004 * 109.47353 * 60.00016 * 12 11 9 42 42 H 1.08999 * 109.47248 * 300.00266 * 12 11 9 43 43 H 1.09002 * 109.46959 * 60.00507 * 15 13 12 44 44 H 1.09003 * 109.47335 * 180.02562 * 15 13 12 45 45 H 1.09002 * 109.47311 * 300.00221 * 15 13 12 46 46 H 1.00902 * 110.99923 * 328.95894 * 16 13 12 47 47 H 1.08995 * 109.47296 * 299.99911 * 17 16 13 48 48 H 1.08997 * 109.47334 * 60.00212 * 17 16 13 49 49 H 0.97003 * 120.00664 * 0.02562 * 20 18 17 50 50 H 0.97010 * 119.99812 * 180.02562 * 24 23 21 51 51 H 1.07994 * 119.99866 * 359.97438 * 29 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1974 0.0000 4 6 3.5805 1.1974 -0.0005 5 6 4.2717 0.0001 -0.0016 6 6 5.7788 0.0002 -0.0028 7 6 3.5807 -1.1969 -0.0027 8 6 4.3342 -2.5020 -0.0044 9 6 4.6933 -2.8767 1.4105 10 8 4.3696 -2.1547 2.3297 11 7 5.3741 -4.0140 1.6543 12 6 5.7236 -4.3778 3.0296 13 6 6.4875 -5.7035 3.0280 14 1 5.8319 -6.5002 2.6766 15 6 6.9606 -6.0213 4.4478 16 7 7.6504 -5.5975 2.1366 17 6 8.0542 -6.9192 1.6386 18 6 9.2475 -6.7705 0.7303 19 8 9.7152 -5.6717 0.5183 20 7 9.7950 -7.8587 0.1536 21 6 10.8803 -7.7236 -0.6732 22 1 11.2966 -6.7451 -0.8620 23 6 11.4450 -8.8454 -1.2674 24 7 10.9386 -10.0360 -1.0372 25 14 12.9242 -8.6613 -2.3933 26 1 14.1710 -8.7638 -1.5933 27 1 12.9034 -9.7362 -3.4177 28 1 12.8738 -7.3373 -3.0641 29 6 2.1981 -1.1969 -0.0059 30 1 -0.3633 0.0001 -1.0277 31 1 -0.3633 -0.8900 0.5138 32 1 -0.3633 0.8900 0.5139 33 1 1.6583 2.1327 0.0004 34 1 4.1204 2.1327 -0.0010 35 1 6.1413 0.0011 -1.0308 36 1 6.1424 0.8897 0.5115 37 1 6.1425 -0.8902 0.5100 38 1 5.2446 -2.3951 -0.5942 39 1 3.7091 -3.2819 -0.4393 40 1 5.6333 -4.5911 0.9191 41 1 4.8134 -4.4841 3.6199 42 1 6.3493 -3.5981 3.4640 43 1 6.0977 -6.1000 5.1092 44 1 7.5052 -6.9655 4.4466 45 1 7.6163 -5.2245 4.7992 46 1 7.4642 -4.9647 1.3731 47 1 8.3163 -7.5601 2.4804 48 1 7.2289 -7.3664 1.0846 49 1 9.4208 -8.7375 0.3228 50 1 11.3331 -10.8193 -1.4518 51 1 1.6582 -2.1322 -0.0100 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001714269469.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:18:24 Heat of formation + Delta-G solvation = -63.348893 kcal Electronic energy + Delta-G solvation = -29645.233045 eV Core-core repulsion = 25543.639251 eV Total energy + Delta-G solvation = -4101.593794 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -40.45896 -39.27666 -38.40970 -36.98219 -34.39992 -34.14637 -33.73921 -32.56938 -31.35065 -30.86932 -29.47077 -28.46982 -26.65622 -25.77267 -24.91513 -23.96692 -22.42983 -21.07642 -20.68792 -19.95686 -19.32445 -17.96946 -17.34967 -16.53764 -16.40571 -16.06292 -15.87095 -15.52457 -15.29055 -14.87601 -14.71372 -14.47920 -14.26365 -13.92931 -13.77383 -13.46177 -13.42253 -13.24215 -13.04472 -12.92434 -12.81630 -12.63260 -12.56549 -12.12734 -12.03966 -11.92793 -11.77125 -11.69207 -11.65925 -11.44619 -11.13451 -11.12312 -11.08716 -10.88261 -10.42594 -10.25674 -10.02878 -9.55132 -9.21684 -8.92568 -8.52672 -8.52018 -8.17083 -8.00682 -6.45836 -3.86813 1.16202 1.24454 2.52731 3.00421 3.15043 3.24096 3.29527 3.60275 3.85178 4.01231 4.24780 4.39578 4.56203 4.61174 4.69211 4.80783 4.82544 4.94799 4.99455 5.00589 5.15488 5.20930 5.21305 5.26663 5.29963 5.33993 5.37793 5.50512 5.51628 5.55410 5.56247 5.65207 5.72759 5.74623 5.77633 5.92142 5.94276 5.96115 6.07308 6.15813 6.23024 6.27480 6.34454 6.41370 6.49980 6.86892 7.11328 7.29942 7.51324 7.53629 8.01802 8.08743 8.56430 9.13624 9.49497 10.00589 10.71711 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.013049 B = 0.001948 C = 0.001797 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2145.286035 B =14371.797958 C =15580.155491 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.095 4.095 3 C -0.118 4.118 4 C -0.117 4.117 5 C -0.071 4.071 6 C -0.118 4.118 7 C -0.061 4.061 8 C -0.107 4.107 9 C 0.517 3.483 10 O -0.530 6.530 11 N -0.733 5.733 12 C 0.119 3.881 13 C 0.072 3.928 14 H 0.049 0.951 15 C -0.138 4.138 16 N -0.664 5.664 17 C 0.049 3.951 18 C 0.439 3.561 19 O -0.583 6.583 20 N -0.562 5.562 21 C -0.300 4.300 22 H 0.103 0.897 23 C 0.022 3.978 24 N -0.901 5.901 25 Si 0.930 3.070 26 H -0.278 1.278 27 H -0.284 1.284 28 H -0.270 1.270 29 C -0.104 4.104 30 H 0.068 0.932 31 H 0.064 0.936 32 H 0.064 0.936 33 H 0.119 0.881 34 H 0.121 0.879 35 H 0.072 0.928 36 H 0.067 0.933 37 H 0.066 0.934 38 H 0.108 0.892 39 H 0.102 0.898 40 H 0.399 0.601 41 H 0.073 0.927 42 H 0.078 0.922 43 H 0.056 0.944 44 H 0.061 0.939 45 H 0.066 0.934 46 H 0.347 0.653 47 H 0.088 0.912 48 H 0.043 0.957 49 H 0.392 0.608 50 H 0.272 0.728 51 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.636 13.624 3.203 24.114 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.095 4.095 3 C -0.136 4.136 4 C -0.135 4.135 5 C -0.071 4.071 6 C -0.175 4.175 7 C -0.061 4.061 8 C -0.147 4.147 9 C 0.304 3.696 10 O -0.405 6.405 11 N -0.387 5.387 12 C -0.005 4.005 13 C -0.039 4.039 14 H 0.066 0.934 15 C -0.197 4.197 16 N -0.299 5.299 17 C -0.083 4.083 18 C 0.224 3.776 19 O -0.467 6.467 20 N -0.199 5.199 21 C -0.429 4.429 22 H 0.121 0.879 23 C -0.179 4.179 24 N -0.542 5.542 25 Si 0.757 3.243 26 H -0.204 1.204 27 H -0.209 1.209 28 H -0.194 1.194 29 C -0.122 4.122 30 H 0.087 0.913 31 H 0.083 0.917 32 H 0.083 0.917 33 H 0.137 0.863 34 H 0.139 0.861 35 H 0.091 0.909 36 H 0.086 0.914 37 H 0.085 0.915 38 H 0.126 0.874 39 H 0.120 0.880 40 H 0.234 0.766 41 H 0.091 0.909 42 H 0.096 0.904 43 H 0.075 0.925 44 H 0.080 0.920 45 H 0.085 0.915 46 H 0.168 0.832 47 H 0.106 0.894 48 H 0.061 0.939 49 H 0.225 0.775 50 H 0.082 0.918 51 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -19.038 14.702 4.172 24.413 hybrid contribution 0.019 -1.193 -1.416 1.852 sum -19.020 13.509 2.756 23.491 Atomic orbital electron populations 1.20761 0.91326 1.02674 1.02099 1.19816 0.95919 0.93099 1.00676 1.20975 0.94152 0.97364 1.01099 1.20965 0.94131 0.97361 1.01032 1.19717 0.96018 0.92541 0.98826 1.20845 0.91170 1.03234 1.02243 1.19078 0.93256 0.93087 1.00725 1.20723 1.02455 0.96532 0.95004 1.20463 0.77514 0.80517 0.91150 1.90731 1.53045 1.50613 1.46152 1.46082 1.58301 1.24555 1.09756 1.21590 0.99206 0.96796 0.82864 1.21810 0.90788 0.95432 0.95846 0.93359 1.21737 1.01088 1.02740 0.94089 1.60119 1.35548 1.10593 1.23641 1.21758 0.96889 0.91204 0.98489 1.19788 0.87079 0.85570 0.85130 1.90530 1.64885 1.25862 1.65423 1.41867 1.28429 1.07851 1.41758 1.19701 1.05994 0.95430 1.21813 0.87904 1.25266 0.99412 0.94643 0.98605 1.69613 1.41723 0.98241 1.44652 0.85855 0.80920 0.78073 0.79435 1.20367 1.20930 1.19411 1.20817 0.93199 0.97581 1.00598 0.91344 0.91671 0.91681 0.86302 0.86111 0.90935 0.91400 0.91475 0.87433 0.87985 0.76577 0.90922 0.90365 0.92505 0.91974 0.91514 0.83168 0.89402 0.93859 0.77466 0.91845 0.86346 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.79 10.01 36.01 0.36 -0.43 16 2 C -0.10 -0.93 5.88 -104.62 -0.62 -1.54 16 3 C -0.12 -1.13 9.70 -39.58 -0.38 -1.52 16 4 C -0.12 -1.20 9.70 -39.58 -0.38 -1.58 16 5 C -0.07 -0.79 5.88 -104.62 -0.62 -1.41 16 6 C -0.12 -1.20 9.22 36.01 0.33 -0.87 16 7 C -0.06 -0.68 4.37 -104.63 -0.46 -1.13 16 8 C -0.11 -1.02 5.15 -29.03 -0.15 -1.17 16 9 C 0.52 6.21 7.05 -10.98 -0.08 6.14 16 10 O -0.53 -8.33 16.03 5.55 0.09 -8.24 16 11 N -0.73 -7.84 4.99 -60.29 -0.30 -8.14 16 12 C 0.12 1.33 5.31 -4.04 -0.02 1.31 16 13 C 0.07 0.81 2.81 -67.71 -0.19 0.62 16 14 H 0.05 0.51 7.80 -51.93 -0.40 0.10 16 15 C -0.14 -1.48 9.41 37.16 0.35 -1.13 16 16 N -0.66 -9.94 5.92 -107.99 -0.64 -10.58 16 17 C 0.05 0.81 5.97 -4.97 -0.03 0.78 16 18 C 0.44 9.96 7.82 -10.98 -0.09 9.88 16 19 O -0.58 -15.34 15.78 5.55 0.09 -15.25 16 20 N -0.56 -13.82 5.29 -10.96 -0.06 -13.88 16 21 C -0.30 -8.19 9.68 -14.93 -0.14 -8.33 16 22 H 0.10 2.95 7.16 -52.48 -0.38 2.58 16 23 C 0.02 0.59 5.50 -17.47 -0.10 0.49 16 24 N -0.90 -24.04 13.05 55.50 0.72 -23.32 16 25 Si 0.93 20.71 29.55 -169.99 -5.02 15.69 16 26 H -0.28 -6.14 7.11 56.52 0.40 -5.74 16 27 H -0.28 -6.18 7.11 56.52 0.40 -5.78 16 28 H -0.27 -5.99 7.11 56.52 0.40 -5.58 16 29 C -0.10 -1.08 9.34 -39.58 -0.37 -1.45 16 30 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 31 H 0.06 0.43 8.09 -51.93 -0.42 0.01 16 32 H 0.06 0.40 8.09 -51.93 -0.42 -0.02 16 33 H 0.12 0.88 8.06 -52.49 -0.42 0.46 16 34 H 0.12 1.00 8.06 -52.49 -0.42 0.58 16 35 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 36 H 0.07 0.64 8.09 -51.93 -0.42 0.22 16 37 H 0.07 0.75 6.16 -51.93 -0.32 0.43 16 38 H 0.11 0.91 6.99 -51.93 -0.36 0.55 16 39 H 0.10 0.74 8.05 -51.93 -0.42 0.32 16 40 H 0.40 3.74 7.37 -40.82 -0.30 3.44 16 41 H 0.07 0.78 8.14 -51.93 -0.42 0.35 16 42 H 0.08 1.00 8.14 -51.93 -0.42 0.57 16 43 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 44 H 0.06 0.69 7.45 -51.93 -0.39 0.31 16 45 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 46 H 0.35 5.29 6.41 -39.29 -0.25 5.04 16 47 H 0.09 1.36 7.43 -51.93 -0.39 0.97 16 48 H 0.04 0.62 8.05 -51.93 -0.42 0.21 16 49 H 0.39 9.20 7.90 -40.82 -0.32 8.88 16 50 H 0.27 6.87 8.31 -40.82 -0.34 6.53 16 51 H 0.12 1.04 8.06 -52.49 -0.42 0.62 16 LS Contribution 421.11 15.07 6.35 6.35 Total: -1.00 -33.58 421.11 -9.50 -43.08 By element: Atomic # 1 Polarization: 23.79 SS G_CDS: -8.15 Total: 15.64 kcal Atomic # 6 Polarization: 1.24 SS G_CDS: -2.58 Total: -1.34 kcal Atomic # 7 Polarization: -55.64 SS G_CDS: -0.27 Total: -55.92 kcal Atomic # 8 Polarization: -23.67 SS G_CDS: 0.18 Total: -23.50 kcal Atomic # 14 Polarization: 20.71 SS G_CDS: -5.02 Total: 15.69 kcal Total LS contribution 6.35 Total: 6.35 kcal Total: -33.58 -9.50 -43.08 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001714269469.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.264 kcal (2) G-P(sol) polarization free energy of solvation -33.583 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.848 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.501 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.085 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.349 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds