Wall clock time and date at job start Wed Apr 1 2020 04:18:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38260 * 119.99837 * 2 1 4 4 C 1.38221 * 119.99924 * 180.02562 * 3 2 1 5 5 C 1.38256 * 119.99741 * 0.02562 * 4 3 2 6 6 C 1.50705 * 119.99371 * 179.97438 * 5 4 3 7 7 C 1.38211 * 120.00342 * 0.02562 * 5 4 3 8 8 C 1.50698 * 119.99886 * 179.97438 * 7 5 4 9 9 C 1.50706 * 109.47266 * 84.99735 * 8 7 5 10 10 O 1.21288 * 119.99707 * 359.97438 * 9 8 7 11 11 N 1.34775 * 119.99969 * 179.97438 * 9 8 7 12 12 C 1.46498 * 119.99673 * 179.97438 * 11 9 8 13 13 C 1.53000 * 109.47043 * 179.97438 * 12 11 9 14 14 H 1.08999 * 109.47446 * 295.00641 * 13 12 11 15 15 C 1.52995 * 109.47146 * 174.99892 * 13 12 11 16 16 N 1.46906 * 109.46965 * 55.00259 * 13 12 11 17 17 C 1.46898 * 110.99888 * 204.99952 * 16 13 12 18 18 C 1.50705 * 109.46661 * 180.02562 * 17 16 13 19 19 O 1.21288 * 120.00125 * 359.97438 * 18 17 16 20 20 N 1.34775 * 119.99549 * 179.97438 * 18 17 16 21 21 C 1.37103 * 120.00062 * 179.97438 * 20 18 17 22 22 H 1.08003 * 119.99229 * 0.02562 * 21 20 18 23 23 C 1.38942 * 120.00207 * 179.97438 * 21 20 18 24 24 N 1.31411 * 119.99885 * 0.02562 * 23 21 20 25 25 Si 1.86804 * 120.00123 * 180.02562 * 23 21 20 26 26 H 1.48494 * 109.47090 * 89.99727 * 25 23 21 27 27 H 1.48497 * 109.47239 * 210.00393 * 25 23 21 28 28 H 1.48506 * 109.46789 * 329.99864 * 25 23 21 29 29 C 1.38215 * 120.00208 * 180.28127 * 2 1 3 30 30 H 1.09001 * 109.47022 * 89.99533 * 1 2 3 31 31 H 1.09005 * 109.46874 * 209.99889 * 1 2 3 32 32 H 1.09001 * 109.47087 * 329.99676 * 1 2 3 33 33 H 1.08001 * 120.00296 * 0.02562 * 3 2 1 34 34 H 1.07995 * 119.99640 * 179.97438 * 4 3 2 35 35 H 1.09005 * 109.46830 * 270.02351 * 6 5 4 36 36 H 1.08994 * 109.47371 * 30.02361 * 6 5 4 37 37 H 1.08997 * 109.46802 * 150.02698 * 6 5 4 38 38 H 1.08994 * 109.47221 * 324.99394 * 8 7 5 39 39 H 1.09001 * 109.46957 * 204.99225 * 8 7 5 40 40 H 0.96995 * 120.00100 * 0.02562 * 11 9 8 41 41 H 1.09004 * 109.47353 * 60.00016 * 12 11 9 42 42 H 1.08999 * 109.47248 * 300.00266 * 12 11 9 43 43 H 1.09002 * 109.46959 * 60.00507 * 15 13 12 44 44 H 1.09003 * 109.47335 * 180.02562 * 15 13 12 45 45 H 1.09002 * 109.47311 * 300.00221 * 15 13 12 46 46 H 1.00902 * 110.99923 * 328.95894 * 16 13 12 47 47 H 1.08995 * 109.47296 * 299.99911 * 17 16 13 48 48 H 1.08997 * 109.47334 * 60.00212 * 17 16 13 49 49 H 0.97003 * 120.00664 * 0.02562 * 20 18 17 50 50 H 0.97010 * 119.99812 * 180.02562 * 24 23 21 51 51 H 1.07994 * 119.99866 * 359.97438 * 29 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1974 0.0000 4 6 3.5805 1.1974 -0.0005 5 6 4.2717 0.0001 -0.0016 6 6 5.7788 0.0002 -0.0028 7 6 3.5807 -1.1969 -0.0027 8 6 4.3342 -2.5020 -0.0044 9 6 4.6933 -2.8767 1.4105 10 8 4.3696 -2.1547 2.3297 11 7 5.3741 -4.0140 1.6543 12 6 5.7236 -4.3778 3.0296 13 6 6.4875 -5.7035 3.0280 14 1 5.8319 -6.5002 2.6766 15 6 6.9606 -6.0213 4.4478 16 7 7.6504 -5.5975 2.1366 17 6 8.0542 -6.9192 1.6386 18 6 9.2475 -6.7705 0.7303 19 8 9.7152 -5.6717 0.5183 20 7 9.7950 -7.8587 0.1536 21 6 10.8803 -7.7236 -0.6732 22 1 11.2966 -6.7451 -0.8620 23 6 11.4450 -8.8454 -1.2674 24 7 10.9386 -10.0360 -1.0372 25 14 12.9242 -8.6613 -2.3933 26 1 14.1710 -8.7638 -1.5933 27 1 12.9034 -9.7362 -3.4177 28 1 12.8738 -7.3373 -3.0641 29 6 2.1981 -1.1969 -0.0059 30 1 -0.3633 0.0001 -1.0277 31 1 -0.3633 -0.8900 0.5138 32 1 -0.3633 0.8900 0.5139 33 1 1.6583 2.1327 0.0004 34 1 4.1204 2.1327 -0.0010 35 1 6.1413 0.0011 -1.0308 36 1 6.1424 0.8897 0.5115 37 1 6.1425 -0.8902 0.5100 38 1 5.2446 -2.3951 -0.5942 39 1 3.7091 -3.2819 -0.4393 40 1 5.6333 -4.5911 0.9191 41 1 4.8134 -4.4841 3.6199 42 1 6.3493 -3.5981 3.4640 43 1 6.0977 -6.1000 5.1092 44 1 7.5052 -6.9655 4.4466 45 1 7.6163 -5.2245 4.7992 46 1 7.4642 -4.9647 1.3731 47 1 8.3163 -7.5601 2.4804 48 1 7.2289 -7.3664 1.0846 49 1 9.4208 -8.7375 0.3228 50 1 11.3331 -10.8193 -1.4518 51 1 1.6582 -2.1322 -0.0100 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001714269469.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:18:23 Heat of formation + Delta-G solvation = -86.137437 kcal Electronic energy + Delta-G solvation = -29646.221231 eV Core-core repulsion = 25543.639251 eV Total energy + Delta-G solvation = -4102.581980 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.54 seconds Orbital eigenvalues (eV) -41.32096 -40.31134 -39.91602 -38.17325 -35.97096 -35.12048 -34.94382 -33.37134 -33.23936 -32.04019 -30.15011 -29.26113 -28.12496 -26.83479 -25.70476 -25.52842 -23.19356 -21.92506 -21.65994 -21.13956 -20.71157 -19.90752 -18.40666 -17.72599 -17.28414 -17.13648 -16.82658 -16.70491 -16.51911 -16.30970 -15.84810 -15.61459 -15.45515 -15.31681 -14.91695 -14.51212 -14.27923 -14.08812 -14.01293 -13.83312 -13.70349 -13.62575 -13.49286 -13.43912 -13.27987 -12.96017 -12.88759 -12.79243 -12.73590 -12.56902 -12.40085 -12.36738 -12.11645 -11.90496 -11.83622 -11.79981 -11.49856 -11.01799 -10.33296 -10.16188 -10.00337 -9.68519 -9.36717 -9.26839 -8.45950 -5.94238 0.40450 0.48907 1.38433 1.42782 1.54809 1.60000 2.06237 2.14492 2.29481 2.82530 2.89698 3.21791 3.49317 3.63778 3.70606 3.85925 3.97473 4.02796 4.11801 4.17634 4.26229 4.29785 4.33741 4.39669 4.46579 4.51198 4.60566 4.62278 4.63098 4.69873 4.74779 4.81464 4.84143 4.85017 4.89214 4.92662 5.04777 5.11364 5.22783 5.30450 5.36454 5.42113 5.45650 5.53043 5.69594 5.73373 5.88835 6.09752 6.14985 6.36638 6.43136 6.61135 7.13899 7.18180 7.57768 8.12979 8.71179 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.013049 B = 0.001948 C = 0.001797 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2145.286035 B =14371.797958 C =15580.155491 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.105 4.105 3 C -0.127 4.127 4 C -0.129 4.129 5 C -0.094 4.094 6 C -0.115 4.115 7 C -0.078 4.078 8 C -0.103 4.103 9 C 0.518 3.482 10 O -0.571 6.571 11 N -0.726 5.726 12 C 0.124 3.876 13 C 0.079 3.921 14 H 0.070 0.930 15 C -0.138 4.138 16 N -0.680 5.680 17 C 0.064 3.936 18 C 0.437 3.563 19 O -0.623 6.623 20 N -0.572 5.572 21 C -0.332 4.332 22 H 0.078 0.922 23 C -0.012 4.012 24 N -0.919 5.919 25 Si 0.991 3.009 26 H -0.273 1.273 27 H -0.271 1.271 28 H -0.273 1.273 29 C -0.119 4.119 30 H 0.080 0.920 31 H 0.068 0.932 32 H 0.074 0.926 33 H 0.139 0.861 34 H 0.134 0.866 35 H 0.083 0.917 36 H 0.070 0.930 37 H 0.052 0.948 38 H 0.116 0.884 39 H 0.127 0.873 40 H 0.408 0.592 41 H 0.082 0.918 42 H 0.058 0.942 43 H 0.080 0.920 44 H 0.059 0.941 45 H 0.052 0.948 46 H 0.344 0.656 47 H 0.104 0.896 48 H 0.074 0.926 49 H 0.397 0.603 50 H 0.277 0.723 51 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.955 12.994 2.924 24.830 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.105 4.105 3 C -0.145 4.145 4 C -0.147 4.147 5 C -0.094 4.094 6 C -0.172 4.172 7 C -0.078 4.078 8 C -0.143 4.143 9 C 0.306 3.694 10 O -0.450 6.450 11 N -0.379 5.379 12 C 0.000 4.000 13 C -0.030 4.030 14 H 0.088 0.912 15 C -0.196 4.196 16 N -0.316 5.316 17 C -0.068 4.068 18 C 0.225 3.775 19 O -0.510 6.510 20 N -0.210 5.210 21 C -0.462 4.462 22 H 0.096 0.904 23 C -0.212 4.212 24 N -0.560 5.560 25 Si 0.814 3.186 26 H -0.199 1.199 27 H -0.196 1.196 28 H -0.197 1.197 29 C -0.137 4.137 30 H 0.098 0.902 31 H 0.087 0.913 32 H 0.093 0.907 33 H 0.157 0.843 34 H 0.152 0.848 35 H 0.102 0.898 36 H 0.088 0.912 37 H 0.071 0.929 38 H 0.134 0.866 39 H 0.145 0.855 40 H 0.244 0.756 41 H 0.100 0.900 42 H 0.077 0.923 43 H 0.099 0.901 44 H 0.078 0.922 45 H 0.071 0.929 46 H 0.164 0.836 47 H 0.122 0.878 48 H 0.092 0.908 49 H 0.231 0.769 50 H 0.087 0.913 51 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -20.369 14.031 3.897 25.040 hybrid contribution 0.388 -0.945 -1.278 1.637 sum -19.981 13.086 2.619 24.028 Atomic orbital electron populations 1.20797 0.89454 1.03340 1.03042 1.20209 0.97462 0.92951 0.99844 1.21293 0.94133 0.98370 1.00666 1.21238 0.94779 0.97724 1.00934 1.19955 0.96462 0.93206 0.99757 1.20817 0.91001 1.02593 1.02753 1.19319 0.93846 0.93582 1.01050 1.20758 1.03202 0.96805 0.93499 1.20863 0.76777 0.80101 0.91693 1.90708 1.54861 1.51882 1.47552 1.46037 1.57591 1.24348 1.09932 1.21509 0.99175 0.96110 0.83164 1.21844 0.89778 0.96001 0.95401 0.91215 1.21753 1.01838 1.01990 0.94027 1.60110 1.37816 1.09785 1.23882 1.21615 0.94822 0.92493 0.97858 1.20887 0.87828 0.84328 0.84481 1.90502 1.66428 1.27361 1.66670 1.41927 1.28323 1.08616 1.42092 1.19643 1.07811 0.94874 1.23846 0.90362 1.26001 1.01613 0.94155 0.99461 1.69667 1.42595 0.98642 1.45091 0.84961 0.77738 0.78048 0.77806 1.19875 1.19572 1.19741 1.21090 0.93229 0.98550 1.00814 0.90163 0.91298 0.90743 0.84278 0.84777 0.89833 0.91151 0.92938 0.86594 0.85486 0.75601 0.89961 0.92341 0.90117 0.92209 0.92893 0.83561 0.87821 0.90840 0.76934 0.91340 0.85122 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.36 10.01 71.24 0.71 -0.65 16 2 C -0.10 -1.94 5.88 -19.86 -0.12 -2.05 16 3 C -0.13 -2.33 9.70 22.27 0.22 -2.11 16 4 C -0.13 -2.60 9.70 22.27 0.22 -2.39 16 5 C -0.09 -2.10 5.88 -19.86 -0.12 -2.22 16 6 C -0.12 -2.37 9.22 71.24 0.66 -1.72 16 7 C -0.08 -1.69 4.37 -19.87 -0.09 -1.78 16 8 C -0.10 -1.90 5.15 29.10 0.15 -1.75 16 9 C 0.52 12.25 7.05 87.66 0.62 12.86 16 10 O -0.57 -18.16 16.03 -3.05 -0.05 -18.21 16 11 N -0.73 -14.79 4.99 -463.05 -2.31 -17.10 16 12 C 0.12 2.64 5.31 86.38 0.46 3.10 16 13 C 0.08 1.63 2.81 44.91 0.13 1.76 16 14 H 0.07 1.20 7.80 -2.39 -0.02 1.19 16 15 C -0.14 -2.68 9.41 71.98 0.68 -2.00 16 16 N -0.68 -19.47 5.92 -495.58 -2.94 -22.41 16 17 C 0.06 2.00 5.97 85.56 0.51 2.51 16 18 C 0.44 19.80 7.82 87.66 0.69 20.48 16 19 O -0.62 -33.35 15.78 -3.05 -0.05 -33.40 16 20 N -0.57 -28.26 5.29 -306.99 -1.62 -29.88 16 21 C -0.33 -18.42 9.68 84.04 0.81 -17.60 16 22 H 0.08 4.65 7.16 -2.91 -0.02 4.63 16 23 C -0.01 -0.65 5.50 84.92 0.47 -0.18 16 24 N -0.92 -48.47 13.05 21.66 0.28 -48.19 16 25 Si 0.99 42.20 29.55 68.60 2.03 44.22 16 26 H -0.27 -11.39 7.11 99.48 0.71 -10.69 16 27 H -0.27 -10.92 7.11 99.48 0.71 -10.21 16 28 H -0.27 -11.65 7.11 99.48 0.71 -10.94 16 29 C -0.12 -2.40 9.34 22.27 0.21 -2.19 16 30 H 0.08 0.81 8.14 -2.39 -0.02 0.79 16 31 H 0.07 0.80 8.09 -2.38 -0.02 0.78 16 32 H 0.07 0.77 8.09 -2.39 -0.02 0.75 16 33 H 0.14 1.86 8.06 -2.91 -0.02 1.83 16 34 H 0.13 2.17 8.06 -2.91 -0.02 2.15 16 35 H 0.08 1.46 8.14 -2.38 -0.02 1.44 16 36 H 0.07 1.36 8.09 -2.39 -0.02 1.34 16 37 H 0.05 1.21 6.16 -2.39 -0.01 1.20 16 38 H 0.12 1.91 6.99 -2.39 -0.02 1.89 16 39 H 0.13 1.63 8.05 -2.39 -0.02 1.61 16 40 H 0.41 7.02 7.37 -92.71 -0.68 6.33 16 41 H 0.08 1.63 8.14 -2.39 -0.02 1.61 16 42 H 0.06 1.49 8.14 -2.39 -0.02 1.47 16 43 H 0.08 1.19 8.14 -2.39 -0.02 1.17 16 44 H 0.06 1.20 7.45 -2.39 -0.02 1.18 16 45 H 0.05 1.17 8.14 -2.39 -0.02 1.16 16 46 H 0.34 10.19 6.41 -89.69 -0.58 9.62 16 47 H 0.10 2.95 7.43 -2.39 -0.02 2.93 16 48 H 0.07 1.88 8.05 -2.39 -0.02 1.86 16 49 H 0.40 18.52 7.90 -92.71 -0.73 17.79 16 50 H 0.28 13.72 8.31 -92.70 -0.77 12.94 16 51 H 0.13 2.16 8.06 -2.91 -0.02 2.13 16 Total: -1.00 -73.46 421.11 0.51 -72.95 By element: Atomic # 1 Polarization: 48.98 SS G_CDS: -1.03 Total: 47.95 kcal Atomic # 6 Polarization: -2.13 SS G_CDS: 6.20 Total: 4.07 kcal Atomic # 7 Polarization: -110.99 SS G_CDS: -6.59 Total: -117.58 kcal Atomic # 8 Polarization: -51.52 SS G_CDS: -0.10 Total: -51.61 kcal Atomic # 14 Polarization: 42.20 SS G_CDS: 2.03 Total: 44.22 kcal Total: -73.46 0.51 -72.95 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001714269469.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.187 kcal (2) G-P(sol) polarization free energy of solvation -73.460 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.647 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.509 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.950 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.137 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.54 seconds