Wall clock time and date at job start Wed Apr 1 2020 04:18:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.38354 * 119.85809 * 2 1 4 4 C 1.37952 * 120.15040 * 179.97438 * 3 2 1 5 5 C 1.50699 * 120.07789 * 180.02562 * 4 3 2 6 6 C 1.39582 * 119.84955 * 0.02562 * 4 3 2 7 7 C 1.47850 * 120.14154 * 180.02562 * 6 4 3 8 8 O 1.21553 * 120.00185 * 90.00011 * 7 6 4 9 9 N 1.34777 * 119.99831 * 269.71966 * 7 6 4 10 10 C 1.46499 * 120.00199 * 180.27510 * 9 7 6 11 11 C 1.52997 * 109.47551 * 180.02562 * 10 9 7 12 12 H 1.08994 * 109.47218 * 64.99529 * 11 10 9 13 13 C 1.52989 * 109.47435 * 185.00577 * 11 10 9 14 14 N 1.46911 * 109.46704 * 305.00213 * 11 10 9 15 15 C 1.46900 * 110.99634 * 154.99967 * 14 11 10 16 16 C 1.50700 * 109.47050 * 179.97438 * 15 14 11 17 17 O 1.21298 * 119.99682 * 0.02562 * 16 15 14 18 18 N 1.34771 * 120.00362 * 180.02562 * 16 15 14 19 19 C 1.37098 * 120.00384 * 180.02562 * 18 16 15 20 20 H 1.08006 * 119.99658 * 359.97438 * 19 18 16 21 21 C 1.38951 * 120.00420 * 180.02562 * 19 18 16 22 22 N 1.31411 * 119.99551 * 359.97438 * 21 19 18 23 23 Si 1.86793 * 119.99992 * 179.97438 * 21 19 18 24 24 H 1.48504 * 109.47333 * 89.99891 * 23 21 19 25 25 H 1.48502 * 109.46989 * 209.99680 * 23 21 19 26 26 H 1.48501 * 109.47356 * 329.99604 * 23 21 19 27 27 C 1.39566 * 119.71190 * 0.27375 * 6 4 3 28 28 C 1.50705 * 120.07209 * 179.72430 * 27 6 4 29 29 C 1.37955 * 119.85413 * 359.40807 * 27 6 4 30 30 H 1.09000 * 109.46632 * 90.00687 * 1 2 3 31 31 H 1.08995 * 109.47119 * 210.00431 * 1 2 3 32 32 H 1.09001 * 109.46743 * 330.00393 * 1 2 3 33 33 H 1.07997 * 119.92617 * 359.97438 * 3 2 1 34 34 H 1.08999 * 109.47374 * 269.97836 * 5 4 3 35 35 H 1.09004 * 109.46989 * 29.97889 * 5 4 3 36 36 H 1.09001 * 109.47310 * 149.97510 * 5 4 3 37 37 H 0.97001 * 119.99727 * 0.28406 * 9 7 6 38 38 H 1.08998 * 109.47134 * 300.00670 * 10 9 7 39 39 H 1.09002 * 109.46857 * 59.99862 * 10 9 7 40 40 H 1.09001 * 109.47374 * 180.02562 * 13 11 10 41 41 H 1.09006 * 109.46977 * 299.99839 * 13 11 10 42 42 H 1.09002 * 109.47666 * 59.99555 * 13 11 10 43 43 H 1.00900 * 111.00143 * 31.04632 * 14 11 10 44 44 H 1.09001 * 109.47243 * 299.99546 * 15 14 11 45 45 H 1.08994 * 109.47412 * 60.00242 * 15 14 11 46 46 H 0.96996 * 120.00120 * 359.97438 * 18 16 15 47 47 H 0.96998 * 119.99646 * 180.02562 * 22 21 19 48 48 H 1.09001 * 109.46898 * 90.00675 * 28 27 6 49 49 H 1.08999 * 109.46910 * 210.00361 * 28 27 6 50 50 H 1.08991 * 109.47449 * 330.00032 * 28 27 6 51 51 H 1.08001 * 119.93377 * 180.33744 * 29 27 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1958 1.1999 0.0000 4 6 3.5753 1.2069 0.0005 5 6 4.3240 2.5148 0.0011 6 6 4.2762 -0.0002 0.0005 7 6 5.7548 -0.0001 0.0017 8 8 6.3617 -0.0006 1.0548 9 7 6.4295 -0.0053 -1.1650 10 6 7.8945 -0.0114 -1.1640 11 6 8.4056 -0.0158 -2.6060 12 1 8.1214 0.9159 -3.0951 13 6 9.9298 -0.1480 -2.6065 14 7 7.8156 -1.1492 -3.3311 15 6 7.7750 -0.8860 -4.7758 16 6 7.1655 -2.0680 -5.4847 17 8 6.8005 -3.0343 -4.8489 18 7 7.0261 -2.0514 -6.8251 19 6 6.4712 -3.1265 -7.4700 20 1 6.1461 -3.9869 -6.9038 21 6 6.3279 -3.1096 -8.8520 22 7 6.7238 -2.0629 -9.5408 23 14 5.5725 -4.5747 -9.7306 24 1 4.1018 -4.3912 -9.8247 25 1 6.1462 -4.6827 -11.0960 26 1 5.8688 -5.8150 -8.9696 27 6 3.5753 -1.2070 -0.0058 28 6 4.3239 -2.5150 -0.0121 29 6 2.1958 -1.2001 0.0003 30 1 -0.3632 -0.0001 -1.0277 31 1 -0.3633 -0.8899 0.5139 32 1 -0.3633 0.8900 0.5138 33 1 1.6523 2.1331 -0.0004 34 1 4.5052 2.8302 -1.0264 35 1 3.7316 3.2723 0.5146 36 1 5.2765 2.3881 0.5157 37 1 5.9451 -0.0049 -2.0054 38 1 8.2611 0.8780 -0.6516 39 1 8.2537 -0.9019 -0.6480 40 1 10.2939 -0.1507 -3.6339 41 1 10.3676 0.6928 -2.0685 42 1 10.2139 -1.0798 -2.1175 43 1 6.8959 -1.3657 -2.9770 44 1 7.1729 0.0024 -4.9665 45 1 8.7879 -0.7246 -5.1444 46 1 7.3176 -1.2785 -7.3335 47 1 6.6235 -2.0509 -10.5055 48 1 4.5039 -2.8356 1.0140 49 1 3.7321 -3.2698 -0.5300 50 1 5.2769 -2.3858 -0.5249 51 1 1.6522 -2.1333 0.0010 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001714300528.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:18:36 Heat of formation + Delta-G solvation = -64.939558 kcal Electronic energy + Delta-G solvation = -30467.913043 eV Core-core repulsion = 26366.250272 eV Total energy + Delta-G solvation = -4101.662771 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -40.68127 -39.02731 -38.34296 -36.94250 -34.16598 -33.88430 -33.84029 -33.53357 -31.33604 -30.84815 -28.20496 -28.07330 -26.95622 -26.62863 -25.75424 -23.97005 -22.07925 -21.03916 -20.68438 -20.17322 -19.33479 -18.06800 -17.79563 -16.56713 -16.45634 -16.14069 -15.56610 -15.39175 -14.95036 -14.57485 -14.48132 -14.39787 -14.23765 -13.85968 -13.65475 -13.47022 -13.41502 -13.33597 -13.24570 -12.89395 -12.83069 -12.75788 -12.56856 -12.42992 -11.95215 -11.92218 -11.78284 -11.69503 -11.62250 -11.46891 -11.43264 -11.21402 -11.10144 -10.88925 -10.41592 -10.24471 -10.03715 -9.53804 -9.24942 -8.80919 -8.78370 -8.50624 -8.16046 -7.99323 -6.44672 -3.85490 0.90419 1.13553 2.45192 2.99036 3.15584 3.24646 3.30588 3.40846 3.86683 4.01751 4.25328 4.44961 4.47218 4.53468 4.58474 4.68777 4.95636 5.00367 5.05257 5.15295 5.18584 5.22246 5.26518 5.30952 5.31108 5.32682 5.35294 5.49865 5.54222 5.56507 5.60768 5.65984 5.70860 5.72766 5.75450 5.90000 5.93014 5.96172 6.06343 6.14392 6.19322 6.23084 6.25652 6.33835 6.35188 6.71446 7.12037 7.26474 7.52500 7.53949 8.01960 8.03080 8.57864 9.14927 9.50898 10.02121 10.73030 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.008967 B = 0.002730 C = 0.002288 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3121.673009 B =10252.593433 C =12233.594594 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.063 4.063 3 C -0.131 4.131 4 C -0.044 4.044 5 C -0.122 4.122 6 C -0.138 4.138 7 C 0.574 3.426 8 O -0.533 6.533 9 N -0.724 5.724 10 C 0.117 3.883 11 C 0.071 3.929 12 H 0.049 0.951 13 C -0.138 4.138 14 N -0.663 5.663 15 C 0.049 3.951 16 C 0.439 3.561 17 O -0.582 6.582 18 N -0.563 5.563 19 C -0.299 4.299 20 H 0.103 0.897 21 C 0.023 3.977 22 N -0.902 5.902 23 Si 0.930 3.070 24 H -0.278 1.278 25 H -0.283 1.283 26 H -0.269 1.269 27 C -0.036 4.036 28 C -0.124 4.124 29 C -0.128 4.128 30 H 0.074 0.926 31 H 0.068 0.932 32 H 0.067 0.933 33 H 0.126 0.874 34 H 0.075 0.925 35 H 0.072 0.928 36 H 0.069 0.931 37 H 0.401 0.599 38 H 0.075 0.925 39 H 0.080 0.920 40 H 0.061 0.939 41 H 0.056 0.944 42 H 0.066 0.934 43 H 0.347 0.653 44 H 0.043 0.957 45 H 0.088 0.912 46 H 0.392 0.608 47 H 0.272 0.728 48 H 0.076 0.924 49 H 0.076 0.924 50 H 0.071 0.929 51 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.147 10.464 17.130 20.993 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.063 4.063 3 C -0.149 4.149 4 C -0.044 4.044 5 C -0.178 4.178 6 C -0.141 4.141 7 C 0.360 3.640 8 O -0.410 6.410 9 N -0.377 5.377 10 C -0.007 4.007 11 C -0.039 4.039 12 H 0.067 0.933 13 C -0.196 4.196 14 N -0.299 5.299 15 C -0.084 4.084 16 C 0.225 3.775 17 O -0.466 6.466 18 N -0.199 5.199 19 C -0.429 4.429 20 H 0.121 0.879 21 C -0.179 4.179 22 N -0.543 5.543 23 Si 0.757 3.243 24 H -0.204 1.204 25 H -0.209 1.209 26 H -0.194 1.194 27 C -0.037 4.037 28 C -0.181 4.181 29 C -0.146 4.146 30 H 0.093 0.907 31 H 0.087 0.913 32 H 0.086 0.914 33 H 0.144 0.856 34 H 0.094 0.906 35 H 0.091 0.909 36 H 0.088 0.912 37 H 0.236 0.764 38 H 0.093 0.907 39 H 0.098 0.902 40 H 0.080 0.920 41 H 0.075 0.925 42 H 0.085 0.915 43 H 0.168 0.832 44 H 0.061 0.939 45 H 0.106 0.894 46 H 0.225 0.775 47 H 0.081 0.919 48 H 0.095 0.905 49 H 0.095 0.905 50 H 0.090 0.910 51 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -5.344 9.487 18.077 21.103 hybrid contribution -1.118 0.459 -1.458 1.894 sum -6.463 9.946 16.619 20.418 Atomic orbital electron populations 1.20840 0.90883 1.02911 1.02698 1.20046 0.96249 0.92962 0.97059 1.20787 0.92940 0.97802 1.03386 1.19815 0.93703 0.93893 0.97025 1.20884 1.00346 0.93844 1.02764 1.19596 0.92550 0.93785 1.08170 1.18205 0.86949 0.75178 0.83708 1.90795 1.69733 1.49303 1.31173 1.46142 1.07656 1.75188 1.08708 1.21651 0.78915 1.03170 0.96930 1.21811 0.96762 0.92986 0.92327 0.93315 1.21733 0.93193 1.02093 1.02585 1.60137 1.29648 1.37757 1.02323 1.21759 1.01488 0.96554 0.88560 1.19782 0.85377 0.89223 0.83135 1.90531 1.54500 1.35787 1.65808 1.41857 1.54442 1.18640 1.04984 1.19702 1.36254 0.97096 0.89850 0.87917 1.25259 0.97744 0.98356 0.96537 1.69610 1.47366 1.29284 1.08024 0.85863 0.78931 0.81157 0.78387 1.20412 1.20907 1.19370 1.19901 0.93714 0.94112 0.95926 1.20921 1.00496 0.93725 1.02941 1.20860 0.93027 0.97934 1.02802 0.90727 0.91309 0.91413 0.85598 0.90627 0.90897 0.91243 0.76365 0.90715 0.90170 0.91952 0.92489 0.91484 0.83172 0.93885 0.89373 0.77483 0.91856 0.90518 0.90496 0.91018 0.85387 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.80 10.01 36.01 0.36 -0.44 16 2 C -0.06 -0.61 5.89 -104.53 -0.62 -1.22 16 3 C -0.13 -1.28 9.34 -39.64 -0.37 -1.65 16 4 C -0.04 -0.48 5.91 -104.23 -0.62 -1.10 16 5 C -0.12 -1.11 9.62 36.01 0.35 -0.77 16 6 C -0.14 -1.74 5.63 -104.97 -0.59 -2.33 16 7 C 0.57 7.75 4.19 -12.33 -0.05 7.70 16 8 O -0.53 -8.86 17.10 5.32 0.09 -8.77 16 9 N -0.72 -8.54 4.98 -61.25 -0.30 -8.85 16 10 C 0.12 1.33 5.31 -4.04 -0.02 1.31 16 11 C 0.07 0.82 2.81 -67.71 -0.19 0.63 16 12 H 0.05 0.52 7.80 -51.93 -0.40 0.11 16 13 C -0.14 -1.47 9.41 37.15 0.35 -1.12 16 14 N -0.66 -10.12 5.93 -108.00 -0.64 -10.76 16 15 C 0.05 0.82 5.97 -4.98 -0.03 0.79 16 16 C 0.44 10.09 7.82 -10.99 -0.09 10.01 16 17 O -0.58 -15.45 15.78 5.54 0.09 -15.37 16 18 N -0.56 -13.97 5.29 -10.96 -0.06 -14.02 16 19 C -0.30 -8.24 9.68 -14.93 -0.14 -8.38 16 20 H 0.10 2.97 7.16 -52.48 -0.38 2.60 16 21 C 0.02 0.60 5.50 -17.47 -0.10 0.50 16 22 N -0.90 -24.21 13.05 55.50 0.72 -23.49 16 23 Si 0.93 20.82 29.55 -169.99 -5.02 15.80 16 24 H -0.28 -6.14 7.11 56.52 0.40 -5.74 16 25 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 26 H -0.27 -6.04 7.11 56.52 0.40 -5.63 16 27 C -0.04 -0.43 5.91 -104.23 -0.62 -1.05 16 28 C -0.12 -1.45 9.62 36.01 0.35 -1.10 16 29 C -0.13 -1.36 9.34 -39.64 -0.37 -1.73 16 30 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 31 H 0.07 0.42 8.08 -51.93 -0.42 0.00 16 32 H 0.07 0.39 8.08 -51.93 -0.42 -0.03 16 33 H 0.13 0.94 8.06 -52.49 -0.42 0.52 16 34 H 0.08 0.62 8.14 -51.93 -0.42 0.19 16 35 H 0.07 0.54 8.09 -51.93 -0.42 0.12 16 36 H 0.07 0.73 7.08 -51.93 -0.37 0.36 16 37 H 0.40 4.51 7.36 -40.82 -0.30 4.21 16 38 H 0.07 0.79 8.14 -51.93 -0.42 0.36 16 39 H 0.08 1.01 8.14 -51.93 -0.42 0.59 16 40 H 0.06 0.69 7.45 -51.93 -0.39 0.31 16 41 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 42 H 0.07 0.77 8.14 -51.93 -0.42 0.34 16 43 H 0.35 5.51 6.41 -39.29 -0.25 5.25 16 44 H 0.04 0.64 8.06 -51.93 -0.42 0.22 16 45 H 0.09 1.38 7.44 -51.93 -0.39 0.99 16 46 H 0.39 9.29 7.90 -40.82 -0.32 8.97 16 47 H 0.27 6.91 8.31 -40.82 -0.34 6.57 16 48 H 0.08 0.85 8.14 -51.93 -0.42 0.42 16 49 H 0.08 0.80 8.09 -51.93 -0.42 0.38 16 50 H 0.07 0.93 7.07 -51.93 -0.37 0.56 16 51 H 0.13 1.12 8.06 -52.49 -0.42 0.70 16 LS Contribution 422.43 15.07 6.37 6.37 Total: -1.00 -33.02 422.43 -9.35 -42.37 By element: Atomic # 1 Polarization: 24.87 SS G_CDS: -8.20 Total: 16.66 kcal Atomic # 6 Polarization: 2.45 SS G_CDS: -2.40 Total: 0.05 kcal Atomic # 7 Polarization: -56.84 SS G_CDS: -0.28 Total: -57.12 kcal Atomic # 8 Polarization: -24.31 SS G_CDS: 0.18 Total: -24.13 kcal Atomic # 14 Polarization: 20.82 SS G_CDS: -5.02 Total: 15.80 kcal Total LS contribution 6.37 Total: 6.37 kcal Total: -33.02 -9.35 -42.37 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001714300528.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.568 kcal (2) G-P(sol) polarization free energy of solvation -33.016 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.585 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.355 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.371 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.940 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds