Wall clock time and date at job start Wed Apr 1 2020 04:18:36
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.50704 * 1
3 3 C 1.38354 * 119.85809 * 2 1
4 4 C 1.37952 * 120.15040 * 179.97438 * 3 2 1
5 5 C 1.50699 * 120.07789 * 180.02562 * 4 3 2
6 6 C 1.39582 * 119.84955 * 0.02562 * 4 3 2
7 7 C 1.47850 * 120.14154 * 180.02562 * 6 4 3
8 8 O 1.21553 * 120.00185 * 90.00011 * 7 6 4
9 9 N 1.34777 * 119.99831 * 269.71966 * 7 6 4
10 10 C 1.46499 * 120.00199 * 180.27510 * 9 7 6
11 11 C 1.52997 * 109.47551 * 180.02562 * 10 9 7
12 12 H 1.08994 * 109.47218 * 64.99529 * 11 10 9
13 13 C 1.52989 * 109.47435 * 185.00577 * 11 10 9
14 14 N 1.46911 * 109.46704 * 305.00213 * 11 10 9
15 15 C 1.46900 * 110.99634 * 154.99967 * 14 11 10
16 16 C 1.50700 * 109.47050 * 179.97438 * 15 14 11
17 17 O 1.21298 * 119.99682 * 0.02562 * 16 15 14
18 18 N 1.34771 * 120.00362 * 180.02562 * 16 15 14
19 19 C 1.37098 * 120.00384 * 180.02562 * 18 16 15
20 20 H 1.08006 * 119.99658 * 359.97438 * 19 18 16
21 21 C 1.38951 * 120.00420 * 180.02562 * 19 18 16
22 22 N 1.31411 * 119.99551 * 359.97438 * 21 19 18
23 23 Si 1.86793 * 119.99992 * 179.97438 * 21 19 18
24 24 H 1.48504 * 109.47333 * 89.99891 * 23 21 19
25 25 H 1.48502 * 109.46989 * 209.99680 * 23 21 19
26 26 H 1.48501 * 109.47356 * 329.99604 * 23 21 19
27 27 C 1.39566 * 119.71190 * 0.27375 * 6 4 3
28 28 C 1.50705 * 120.07209 * 179.72430 * 27 6 4
29 29 C 1.37955 * 119.85413 * 359.40807 * 27 6 4
30 30 H 1.09000 * 109.46632 * 90.00687 * 1 2 3
31 31 H 1.08995 * 109.47119 * 210.00431 * 1 2 3
32 32 H 1.09001 * 109.46743 * 330.00393 * 1 2 3
33 33 H 1.07997 * 119.92617 * 359.97438 * 3 2 1
34 34 H 1.08999 * 109.47374 * 269.97836 * 5 4 3
35 35 H 1.09004 * 109.46989 * 29.97889 * 5 4 3
36 36 H 1.09001 * 109.47310 * 149.97510 * 5 4 3
37 37 H 0.97001 * 119.99727 * 0.28406 * 9 7 6
38 38 H 1.08998 * 109.47134 * 300.00670 * 10 9 7
39 39 H 1.09002 * 109.46857 * 59.99862 * 10 9 7
40 40 H 1.09001 * 109.47374 * 180.02562 * 13 11 10
41 41 H 1.09006 * 109.46977 * 299.99839 * 13 11 10
42 42 H 1.09002 * 109.47666 * 59.99555 * 13 11 10
43 43 H 1.00900 * 111.00143 * 31.04632 * 14 11 10
44 44 H 1.09001 * 109.47243 * 299.99546 * 15 14 11
45 45 H 1.08994 * 109.47412 * 60.00242 * 15 14 11
46 46 H 0.96996 * 120.00120 * 359.97438 * 18 16 15
47 47 H 0.96998 * 119.99646 * 180.02562 * 22 21 19
48 48 H 1.09001 * 109.46898 * 90.00675 * 28 27 6
49 49 H 1.08999 * 109.46910 * 210.00361 * 28 27 6
50 50 H 1.08991 * 109.47449 * 330.00032 * 28 27 6
51 51 H 1.08001 * 119.93377 * 180.33744 * 29 27 6
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5070 0.0000 0.0000
3 6 2.1958 1.1999 0.0000
4 6 3.5753 1.2069 0.0005
5 6 4.3240 2.5148 0.0011
6 6 4.2762 -0.0002 0.0005
7 6 5.7548 -0.0001 0.0017
8 8 6.3617 -0.0006 1.0548
9 7 6.4295 -0.0053 -1.1650
10 6 7.8945 -0.0114 -1.1640
11 6 8.4056 -0.0158 -2.6060
12 1 8.1214 0.9159 -3.0951
13 6 9.9298 -0.1480 -2.6065
14 7 7.8156 -1.1492 -3.3311
15 6 7.7750 -0.8860 -4.7758
16 6 7.1655 -2.0680 -5.4847
17 8 6.8005 -3.0343 -4.8489
18 7 7.0261 -2.0514 -6.8251
19 6 6.4712 -3.1265 -7.4700
20 1 6.1461 -3.9869 -6.9038
21 6 6.3279 -3.1096 -8.8520
22 7 6.7238 -2.0629 -9.5408
23 14 5.5725 -4.5747 -9.7306
24 1 4.1018 -4.3912 -9.8247
25 1 6.1462 -4.6827 -11.0960
26 1 5.8688 -5.8150 -8.9696
27 6 3.5753 -1.2070 -0.0058
28 6 4.3239 -2.5150 -0.0121
29 6 2.1958 -1.2001 0.0003
30 1 -0.3632 -0.0001 -1.0277
31 1 -0.3633 -0.8899 0.5139
32 1 -0.3633 0.8900 0.5138
33 1 1.6523 2.1331 -0.0004
34 1 4.5052 2.8302 -1.0264
35 1 3.7316 3.2723 0.5146
36 1 5.2765 2.3881 0.5157
37 1 5.9451 -0.0049 -2.0054
38 1 8.2611 0.8780 -0.6516
39 1 8.2537 -0.9019 -0.6480
40 1 10.2939 -0.1507 -3.6339
41 1 10.3676 0.6928 -2.0685
42 1 10.2139 -1.0798 -2.1175
43 1 6.8959 -1.3657 -2.9770
44 1 7.1729 0.0024 -4.9665
45 1 8.7879 -0.7246 -5.1444
46 1 7.3176 -1.2785 -7.3335
47 1 6.6235 -2.0509 -10.5055
48 1 4.5039 -2.8356 1.0140
49 1 3.7321 -3.2698 -0.5300
50 1 5.2769 -2.3858 -0.5249
51 1 1.6522 -2.1333 0.0010
RHF calculation, no. of doubly occupied orbitals= 66
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001714300528.mol2 51
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 04:18:36
Heat of formation + Delta-G solvation = -64.939558 kcal
Electronic energy + Delta-G solvation = -30467.913043 eV
Core-core repulsion = 26366.250272 eV
Total energy + Delta-G solvation = -4101.662771 eV
No. of doubly occupied orbitals = 66
Molecular weight
(most abundant/longest-lived isotopes) = 347.200 amu
Computer time = 1.13 seconds
Orbital eigenvalues (eV)
-40.68127 -39.02731 -38.34296 -36.94250 -34.16598 -33.88430 -33.84029 -33.53357
-31.33604 -30.84815 -28.20496 -28.07330 -26.95622 -26.62863 -25.75424 -23.97005
-22.07925 -21.03916 -20.68438 -20.17322 -19.33479 -18.06800 -17.79563 -16.56713
-16.45634 -16.14069 -15.56610 -15.39175 -14.95036 -14.57485 -14.48132 -14.39787
-14.23765 -13.85968 -13.65475 -13.47022 -13.41502 -13.33597 -13.24570 -12.89395
-12.83069 -12.75788 -12.56856 -12.42992 -11.95215 -11.92218 -11.78284 -11.69503
-11.62250 -11.46891 -11.43264 -11.21402 -11.10144 -10.88925 -10.41592 -10.24471
-10.03715 -9.53804 -9.24942 -8.80919 -8.78370 -8.50624 -8.16046 -7.99323
-6.44672 -3.85490 0.90419 1.13553 2.45192 2.99036 3.15584 3.24646
3.30588 3.40846 3.86683 4.01751 4.25328 4.44961 4.47218 4.53468
4.58474 4.68777 4.95636 5.00367 5.05257 5.15295 5.18584 5.22246
5.26518 5.30952 5.31108 5.32682 5.35294 5.49865 5.54222 5.56507
5.60768 5.65984 5.70860 5.72766 5.75450 5.90000 5.93014 5.96172
6.06343 6.14392 6.19322 6.23084 6.25652 6.33835 6.35188 6.71446
7.12037 7.26474 7.52500 7.53949 8.01960 8.03080 8.57864 9.14927
9.50898 10.02121 10.73030
Molecular weight = 347.20amu
Principal moments of inertia in cm(-1)
A = 0.008967 B = 0.002730 C = 0.002288
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 3121.673009 B =10252.593433 C =12233.594594
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.117 4.117
2 C -0.063 4.063
3 C -0.131 4.131
4 C -0.044 4.044
5 C -0.122 4.122
6 C -0.138 4.138
7 C 0.574 3.426
8 O -0.533 6.533
9 N -0.724 5.724
10 C 0.117 3.883
11 C 0.071 3.929
12 H 0.049 0.951
13 C -0.138 4.138
14 N -0.663 5.663
15 C 0.049 3.951
16 C 0.439 3.561
17 O -0.582 6.582
18 N -0.563 5.563
19 C -0.299 4.299
20 H 0.103 0.897
21 C 0.023 3.977
22 N -0.902 5.902
23 Si 0.930 3.070
24 H -0.278 1.278
25 H -0.283 1.283
26 H -0.269 1.269
27 C -0.036 4.036
28 C -0.124 4.124
29 C -0.128 4.128
30 H 0.074 0.926
31 H 0.068 0.932
32 H 0.067 0.933
33 H 0.126 0.874
34 H 0.075 0.925
35 H 0.072 0.928
36 H 0.069 0.931
37 H 0.401 0.599
38 H 0.075 0.925
39 H 0.080 0.920
40 H 0.061 0.939
41 H 0.056 0.944
42 H 0.066 0.934
43 H 0.347 0.653
44 H 0.043 0.957
45 H 0.088 0.912
46 H 0.392 0.608
47 H 0.272 0.728
48 H 0.076 0.924
49 H 0.076 0.924
50 H 0.071 0.929
51 H 0.128 0.872
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -6.147 10.464 17.130 20.993
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.173 4.173
2 C -0.063 4.063
3 C -0.149 4.149
4 C -0.044 4.044
5 C -0.178 4.178
6 C -0.141 4.141
7 C 0.360 3.640
8 O -0.410 6.410
9 N -0.377 5.377
10 C -0.007 4.007
11 C -0.039 4.039
12 H 0.067 0.933
13 C -0.196 4.196
14 N -0.299 5.299
15 C -0.084 4.084
16 C 0.225 3.775
17 O -0.466 6.466
18 N -0.199 5.199
19 C -0.429 4.429
20 H 0.121 0.879
21 C -0.179 4.179
22 N -0.543 5.543
23 Si 0.757 3.243
24 H -0.204 1.204
25 H -0.209 1.209
26 H -0.194 1.194
27 C -0.037 4.037
28 C -0.181 4.181
29 C -0.146 4.146
30 H 0.093 0.907
31 H 0.087 0.913
32 H 0.086 0.914
33 H 0.144 0.856
34 H 0.094 0.906
35 H 0.091 0.909
36 H 0.088 0.912
37 H 0.236 0.764
38 H 0.093 0.907
39 H 0.098 0.902
40 H 0.080 0.920
41 H 0.075 0.925
42 H 0.085 0.915
43 H 0.168 0.832
44 H 0.061 0.939
45 H 0.106 0.894
46 H 0.225 0.775
47 H 0.081 0.919
48 H 0.095 0.905
49 H 0.095 0.905
50 H 0.090 0.910
51 H 0.146 0.854
Dipole moment (debyes) X Y Z Total
from point charges -5.344 9.487 18.077 21.103
hybrid contribution -1.118 0.459 -1.458 1.894
sum -6.463 9.946 16.619 20.418
Atomic orbital electron populations
1.20840 0.90883 1.02911 1.02698 1.20046 0.96249 0.92962 0.97059
1.20787 0.92940 0.97802 1.03386 1.19815 0.93703 0.93893 0.97025
1.20884 1.00346 0.93844 1.02764 1.19596 0.92550 0.93785 1.08170
1.18205 0.86949 0.75178 0.83708 1.90795 1.69733 1.49303 1.31173
1.46142 1.07656 1.75188 1.08708 1.21651 0.78915 1.03170 0.96930
1.21811 0.96762 0.92986 0.92327 0.93315 1.21733 0.93193 1.02093
1.02585 1.60137 1.29648 1.37757 1.02323 1.21759 1.01488 0.96554
0.88560 1.19782 0.85377 0.89223 0.83135 1.90531 1.54500 1.35787
1.65808 1.41857 1.54442 1.18640 1.04984 1.19702 1.36254 0.97096
0.89850 0.87917 1.25259 0.97744 0.98356 0.96537 1.69610 1.47366
1.29284 1.08024 0.85863 0.78931 0.81157 0.78387 1.20412 1.20907
1.19370 1.19901 0.93714 0.94112 0.95926 1.20921 1.00496 0.93725
1.02941 1.20860 0.93027 0.97934 1.02802 0.90727 0.91309 0.91413
0.85598 0.90627 0.90897 0.91243 0.76365 0.90715 0.90170 0.91952
0.92489 0.91484 0.83172 0.93885 0.89373 0.77483 0.91856 0.90518
0.90496 0.91018 0.85387
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.12 -0.80 10.01 36.01 0.36 -0.44 16
2 C -0.06 -0.61 5.89 -104.53 -0.62 -1.22 16
3 C -0.13 -1.28 9.34 -39.64 -0.37 -1.65 16
4 C -0.04 -0.48 5.91 -104.23 -0.62 -1.10 16
5 C -0.12 -1.11 9.62 36.01 0.35 -0.77 16
6 C -0.14 -1.74 5.63 -104.97 -0.59 -2.33 16
7 C 0.57 7.75 4.19 -12.33 -0.05 7.70 16
8 O -0.53 -8.86 17.10 5.32 0.09 -8.77 16
9 N -0.72 -8.54 4.98 -61.25 -0.30 -8.85 16
10 C 0.12 1.33 5.31 -4.04 -0.02 1.31 16
11 C 0.07 0.82 2.81 -67.71 -0.19 0.63 16
12 H 0.05 0.52 7.80 -51.93 -0.40 0.11 16
13 C -0.14 -1.47 9.41 37.15 0.35 -1.12 16
14 N -0.66 -10.12 5.93 -108.00 -0.64 -10.76 16
15 C 0.05 0.82 5.97 -4.98 -0.03 0.79 16
16 C 0.44 10.09 7.82 -10.99 -0.09 10.01 16
17 O -0.58 -15.45 15.78 5.54 0.09 -15.37 16
18 N -0.56 -13.97 5.29 -10.96 -0.06 -14.02 16
19 C -0.30 -8.24 9.68 -14.93 -0.14 -8.38 16
20 H 0.10 2.97 7.16 -52.48 -0.38 2.60 16
21 C 0.02 0.60 5.50 -17.47 -0.10 0.50 16
22 N -0.90 -24.21 13.05 55.50 0.72 -23.49 16
23 Si 0.93 20.82 29.55 -169.99 -5.02 15.80 16
24 H -0.28 -6.14 7.11 56.52 0.40 -5.74 16
25 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16
26 H -0.27 -6.04 7.11 56.52 0.40 -5.63 16
27 C -0.04 -0.43 5.91 -104.23 -0.62 -1.05 16
28 C -0.12 -1.45 9.62 36.01 0.35 -1.10 16
29 C -0.13 -1.36 9.34 -39.64 -0.37 -1.73 16
30 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16
31 H 0.07 0.42 8.08 -51.93 -0.42 0.00 16
32 H 0.07 0.39 8.08 -51.93 -0.42 -0.03 16
33 H 0.13 0.94 8.06 -52.49 -0.42 0.52 16
34 H 0.08 0.62 8.14 -51.93 -0.42 0.19 16
35 H 0.07 0.54 8.09 -51.93 -0.42 0.12 16
36 H 0.07 0.73 7.08 -51.93 -0.37 0.36 16
37 H 0.40 4.51 7.36 -40.82 -0.30 4.21 16
38 H 0.07 0.79 8.14 -51.93 -0.42 0.36 16
39 H 0.08 1.01 8.14 -51.93 -0.42 0.59 16
40 H 0.06 0.69 7.45 -51.93 -0.39 0.31 16
41 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16
42 H 0.07 0.77 8.14 -51.93 -0.42 0.34 16
43 H 0.35 5.51 6.41 -39.29 -0.25 5.25 16
44 H 0.04 0.64 8.06 -51.93 -0.42 0.22 16
45 H 0.09 1.38 7.44 -51.93 -0.39 0.99 16
46 H 0.39 9.29 7.90 -40.82 -0.32 8.97 16
47 H 0.27 6.91 8.31 -40.82 -0.34 6.57 16
48 H 0.08 0.85 8.14 -51.93 -0.42 0.42 16
49 H 0.08 0.80 8.09 -51.93 -0.42 0.38 16
50 H 0.07 0.93 7.07 -51.93 -0.37 0.56 16
51 H 0.13 1.12 8.06 -52.49 -0.42 0.70 16
LS Contribution 422.43 15.07 6.37 6.37
Total: -1.00 -33.02 422.43 -9.35 -42.37
By element:
Atomic # 1 Polarization: 24.87 SS G_CDS: -8.20 Total: 16.66 kcal
Atomic # 6 Polarization: 2.45 SS G_CDS: -2.40 Total: 0.05 kcal
Atomic # 7 Polarization: -56.84 SS G_CDS: -0.28 Total: -57.12 kcal
Atomic # 8 Polarization: -24.31 SS G_CDS: 0.18 Total: -24.13 kcal
Atomic # 14 Polarization: 20.82 SS G_CDS: -5.02 Total: 15.80 kcal
Total LS contribution 6.37 Total: 6.37 kcal
Total: -33.02 -9.35 -42.37 kcal
The number of atoms in the molecule is 51
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001714300528.mol2 51
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -22.568 kcal
(2) G-P(sol) polarization free energy of solvation -33.016 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.585 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.355 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.371 kcal
(6) G-S(sol) free energy of system = (1) + (5) -64.940 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.13 seconds