Wall clock time and date at job start Wed Apr 1 2020 04:18:35
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.50704 * 1
3 3 C 1.38354 * 119.85809 * 2 1
4 4 C 1.37952 * 120.15040 * 179.97438 * 3 2 1
5 5 C 1.50699 * 120.07789 * 180.02562 * 4 3 2
6 6 C 1.39582 * 119.84955 * 0.02562 * 4 3 2
7 7 C 1.47850 * 120.14154 * 180.02562 * 6 4 3
8 8 O 1.21553 * 120.00185 * 90.00011 * 7 6 4
9 9 N 1.34777 * 119.99831 * 269.71966 * 7 6 4
10 10 C 1.46499 * 120.00199 * 180.27510 * 9 7 6
11 11 C 1.52997 * 109.47551 * 180.02562 * 10 9 7
12 12 H 1.08994 * 109.47218 * 64.99529 * 11 10 9
13 13 C 1.52989 * 109.47435 * 185.00577 * 11 10 9
14 14 N 1.46911 * 109.46704 * 305.00213 * 11 10 9
15 15 C 1.46900 * 110.99634 * 154.99967 * 14 11 10
16 16 C 1.50700 * 109.47050 * 179.97438 * 15 14 11
17 17 O 1.21298 * 119.99682 * 0.02562 * 16 15 14
18 18 N 1.34771 * 120.00362 * 180.02562 * 16 15 14
19 19 C 1.37098 * 120.00384 * 180.02562 * 18 16 15
20 20 H 1.08006 * 119.99658 * 359.97438 * 19 18 16
21 21 C 1.38951 * 120.00420 * 180.02562 * 19 18 16
22 22 N 1.31411 * 119.99551 * 359.97438 * 21 19 18
23 23 Si 1.86793 * 119.99992 * 179.97438 * 21 19 18
24 24 H 1.48504 * 109.47333 * 89.99891 * 23 21 19
25 25 H 1.48502 * 109.46989 * 209.99680 * 23 21 19
26 26 H 1.48501 * 109.47356 * 329.99604 * 23 21 19
27 27 C 1.39566 * 119.71190 * 0.27375 * 6 4 3
28 28 C 1.50705 * 120.07209 * 179.72430 * 27 6 4
29 29 C 1.37955 * 119.85413 * 359.40807 * 27 6 4
30 30 H 1.09000 * 109.46632 * 90.00687 * 1 2 3
31 31 H 1.08995 * 109.47119 * 210.00431 * 1 2 3
32 32 H 1.09001 * 109.46743 * 330.00393 * 1 2 3
33 33 H 1.07997 * 119.92617 * 359.97438 * 3 2 1
34 34 H 1.08999 * 109.47374 * 269.97836 * 5 4 3
35 35 H 1.09004 * 109.46989 * 29.97889 * 5 4 3
36 36 H 1.09001 * 109.47310 * 149.97510 * 5 4 3
37 37 H 0.97001 * 119.99727 * 0.28406 * 9 7 6
38 38 H 1.08998 * 109.47134 * 300.00670 * 10 9 7
39 39 H 1.09002 * 109.46857 * 59.99862 * 10 9 7
40 40 H 1.09001 * 109.47374 * 180.02562 * 13 11 10
41 41 H 1.09006 * 109.46977 * 299.99839 * 13 11 10
42 42 H 1.09002 * 109.47666 * 59.99555 * 13 11 10
43 43 H 1.00900 * 111.00143 * 31.04632 * 14 11 10
44 44 H 1.09001 * 109.47243 * 299.99546 * 15 14 11
45 45 H 1.08994 * 109.47412 * 60.00242 * 15 14 11
46 46 H 0.96996 * 120.00120 * 359.97438 * 18 16 15
47 47 H 0.96998 * 119.99646 * 180.02562 * 22 21 19
48 48 H 1.09001 * 109.46898 * 90.00675 * 28 27 6
49 49 H 1.08999 * 109.46910 * 210.00361 * 28 27 6
50 50 H 1.08991 * 109.47449 * 330.00032 * 28 27 6
51 51 H 1.08001 * 119.93377 * 180.33744 * 29 27 6
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5070 0.0000 0.0000
3 6 2.1958 1.1999 0.0000
4 6 3.5753 1.2069 0.0005
5 6 4.3240 2.5148 0.0011
6 6 4.2762 -0.0002 0.0005
7 6 5.7548 -0.0001 0.0017
8 8 6.3617 -0.0006 1.0548
9 7 6.4295 -0.0053 -1.1650
10 6 7.8945 -0.0114 -1.1640
11 6 8.4056 -0.0158 -2.6060
12 1 8.1214 0.9159 -3.0951
13 6 9.9298 -0.1480 -2.6065
14 7 7.8156 -1.1492 -3.3311
15 6 7.7750 -0.8860 -4.7758
16 6 7.1655 -2.0680 -5.4847
17 8 6.8005 -3.0343 -4.8489
18 7 7.0261 -2.0514 -6.8251
19 6 6.4712 -3.1265 -7.4700
20 1 6.1461 -3.9869 -6.9038
21 6 6.3279 -3.1096 -8.8520
22 7 6.7238 -2.0629 -9.5408
23 14 5.5725 -4.5747 -9.7306
24 1 4.1018 -4.3912 -9.8247
25 1 6.1462 -4.6827 -11.0960
26 1 5.8688 -5.8150 -8.9696
27 6 3.5753 -1.2070 -0.0058
28 6 4.3239 -2.5150 -0.0121
29 6 2.1958 -1.2001 0.0003
30 1 -0.3632 -0.0001 -1.0277
31 1 -0.3633 -0.8899 0.5139
32 1 -0.3633 0.8900 0.5138
33 1 1.6523 2.1331 -0.0004
34 1 4.5052 2.8302 -1.0264
35 1 3.7316 3.2723 0.5146
36 1 5.2765 2.3881 0.5157
37 1 5.9451 -0.0049 -2.0054
38 1 8.2611 0.8780 -0.6516
39 1 8.2537 -0.9019 -0.6480
40 1 10.2939 -0.1507 -3.6339
41 1 10.3676 0.6928 -2.0685
42 1 10.2139 -1.0798 -2.1175
43 1 6.8959 -1.3657 -2.9770
44 1 7.1729 0.0024 -4.9665
45 1 8.7879 -0.7246 -5.1444
46 1 7.3176 -1.2785 -7.3335
47 1 6.6235 -2.0509 -10.5055
48 1 4.5039 -2.8356 1.0140
49 1 3.7321 -3.2698 -0.5300
50 1 5.2769 -2.3858 -0.5249
51 1 1.6522 -2.1333 0.0010
RHF calculation, no. of doubly occupied orbitals= 66
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001714300528.mol2 51
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 04:18:35
Heat of formation + Delta-G solvation = -87.510673 kcal
Electronic energy + Delta-G solvation = -30468.891800 eV
Core-core repulsion = 26366.250272 eV
Total energy + Delta-G solvation = -4102.641528 eV
No. of doubly occupied orbitals = 66
Molecular weight
(most abundant/longest-lived isotopes) = 347.200 amu
Computer time = 1.50 seconds
Orbital eigenvalues (eV)
-41.61848 -40.28127 -39.74494 -38.17663 -35.98116 -35.06547 -34.65099 -34.42734
-33.27371 -32.05548 -28.99123 -28.85372 -28.12832 -27.74336 -26.83047 -25.64611
-22.95808 -21.85099 -21.69816 -21.20218 -20.97724 -19.92557 -18.92134 -17.81157
-17.47499 -17.27691 -16.92330 -16.69964 -16.31598 -15.96451 -15.73521 -15.40261
-15.24056 -15.11595 -15.04028 -14.50598 -14.29461 -14.20016 -14.04525 -14.01023
-13.74137 -13.67174 -13.59078 -13.48900 -13.31704 -13.26613 -12.94990 -12.82624
-12.68271 -12.59771 -12.43513 -12.40863 -12.22114 -12.12559 -11.98506 -11.90098
-11.50319 -11.08505 -10.34524 -10.27126 -10.01113 -9.61409 -9.59600 -9.39563
-8.46669 -5.95033 0.07777 0.32659 1.37767 1.41107 1.42058 1.54423
2.03313 2.06091 2.28906 2.59209 2.85733 3.20928 3.46531 3.56620
3.67561 3.72435 3.76162 3.86053 4.14770 4.23821 4.27982 4.33704
4.37148 4.42525 4.44318 4.54495 4.58258 4.59619 4.60253 4.61493
4.66624 4.75467 4.78402 4.84906 4.91361 4.92514 5.02333 5.03702
5.20859 5.22041 5.24880 5.39781 5.41197 5.43557 5.44363 5.58084
5.87047 5.95194 6.08166 6.26952 6.31422 6.60298 6.99965 7.13069
7.56595 8.11972 8.70671
Molecular weight = 347.20amu
Principal moments of inertia in cm(-1)
A = 0.008967 B = 0.002730 C = 0.002288
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 3121.673009 B =10252.593433 C =12233.594594
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.115 4.115
2 C -0.064 4.064
3 C -0.133 4.133
4 C -0.053 4.053
5 C -0.118 4.118
6 C -0.163 4.163
7 C 0.578 3.422
8 O -0.572 6.572
9 N -0.716 5.716
10 C 0.121 3.879
11 C 0.079 3.921
12 H 0.070 0.930
13 C -0.136 4.136
14 N -0.679 5.679
15 C 0.064 3.936
16 C 0.437 3.563
17 O -0.622 6.622
18 N -0.572 5.572
19 C -0.333 4.333
20 H 0.078 0.922
21 C -0.011 4.011
22 N -0.919 5.919
23 Si 0.990 3.010
24 H -0.270 1.270
25 H -0.271 1.271
26 H -0.274 1.274
27 C -0.055 4.055
28 C -0.121 4.121
29 C -0.138 4.138
30 H 0.081 0.919
31 H 0.076 0.924
32 H 0.082 0.918
33 H 0.152 0.848
34 H 0.086 0.914
35 H 0.093 0.907
36 H 0.051 0.949
37 H 0.405 0.595
38 H 0.089 0.911
39 H 0.063 0.937
40 H 0.059 0.941
41 H 0.082 0.918
42 H 0.053 0.947
43 H 0.341 0.659
44 H 0.071 0.929
45 H 0.106 0.894
46 H 0.397 0.603
47 H 0.277 0.723
48 H 0.077 0.923
49 H 0.085 0.915
50 H 0.052 0.948
51 H 0.143 0.857
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -7.204 12.088 16.728 21.860
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.171 4.171
2 C -0.064 4.064
3 C -0.151 4.151
4 C -0.053 4.053
5 C -0.175 4.175
6 C -0.166 4.166
7 C 0.365 3.635
8 O -0.452 6.452
9 N -0.367 5.367
10 C -0.002 4.002
11 C -0.031 4.031
12 H 0.087 0.913
13 C -0.195 4.195
14 N -0.314 5.314
15 C -0.068 4.068
16 C 0.224 3.776
17 O -0.509 6.509
18 N -0.209 5.209
19 C -0.463 4.463
20 H 0.096 0.904
21 C -0.211 4.211
22 N -0.560 5.560
23 Si 0.814 3.186
24 H -0.195 1.195
25 H -0.196 1.196
26 H -0.199 1.199
27 C -0.055 4.055
28 C -0.178 4.178
29 C -0.156 4.156
30 H 0.099 0.901
31 H 0.095 0.905
32 H 0.101 0.899
33 H 0.170 0.830
34 H 0.104 0.896
35 H 0.111 0.889
36 H 0.070 0.930
37 H 0.241 0.759
38 H 0.107 0.893
39 H 0.082 0.918
40 H 0.079 0.921
41 H 0.101 0.899
42 H 0.073 0.927
43 H 0.161 0.839
44 H 0.089 0.911
45 H 0.124 0.876
46 H 0.230 0.770
47 H 0.087 0.913
48 H 0.095 0.905
49 H 0.104 0.896
50 H 0.071 0.929
51 H 0.160 0.840
Dipole moment (debyes) X Y Z Total
from point charges -6.385 11.144 17.651 21.829
hybrid contribution -0.800 -0.031 -1.284 1.513
sum -7.185 11.113 16.367 21.047
Atomic orbital electron populations
1.20899 0.88690 1.04131 1.03422 1.20440 0.97884 0.92538 0.95580
1.21132 0.92522 0.99019 1.02408 1.20109 0.94543 0.93976 0.96717
1.20896 0.99597 0.93525 1.03454 1.19677 0.91961 0.94820 1.10106
1.18388 0.87486 0.74220 0.83382 1.90760 1.70606 1.51346 1.32443
1.46099 1.07893 1.74264 1.08478 1.21641 0.78612 1.03048 0.96928
1.21866 0.97076 0.92408 0.91734 0.91262 1.21744 0.92398 1.02618
1.02697 1.60142 1.29551 1.40026 1.01723 1.21622 1.02195 0.94203
0.88825 1.20869 0.83826 0.90309 0.82554 1.90503 1.55869 1.37979
1.66536 1.41913 1.54921 1.18280 1.05799 1.19647 1.38291 0.97667
0.90653 0.90412 1.25999 0.97646 1.00868 0.96608 1.69665 1.47462
1.30409 1.08504 0.84965 0.78461 0.77733 0.77432 1.19540 1.19602
1.19887 1.20034 0.94607 0.93893 0.97002 1.20878 0.99746 0.94332
1.02830 1.21108 0.92506 0.99244 1.02749 0.90074 0.90496 0.89885
0.82986 0.89559 0.88864 0.92998 0.75933 0.89304 0.91813 0.92149
0.89920 0.92746 0.83854 0.91133 0.87580 0.76955 0.91307 0.90461
0.89630 0.92925 0.83958
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.12 -1.29 10.01 71.24 0.71 -0.57 16
2 C -0.06 -1.13 5.89 -19.80 -0.12 -1.25 16
3 C -0.13 -2.34 9.34 22.23 0.21 -2.13 16
4 C -0.05 -1.12 5.91 -19.61 -0.12 -1.23 16
5 C -0.12 -2.01 9.62 71.24 0.69 -1.32 16
6 C -0.16 -4.15 5.63 -20.09 -0.11 -4.27 16
7 C 0.58 16.05 4.19 86.79 0.36 16.41 16
8 O -0.57 -19.70 17.10 -3.88 -0.07 -19.76 16
9 N -0.72 -16.96 4.98 -465.97 -2.32 -19.28 16
10 C 0.12 2.69 5.31 86.38 0.46 3.15 16
11 C 0.08 1.68 2.81 44.91 0.13 1.81 16
12 H 0.07 1.26 7.80 -2.39 -0.02 1.24 16
13 C -0.14 -2.66 9.41 71.98 0.68 -1.98 16
14 N -0.68 -20.26 5.93 -495.59 -2.94 -23.19 16
15 C 0.06 2.05 5.97 85.56 0.51 2.56 16
16 C 0.44 20.21 7.82 87.66 0.69 20.90 16
17 O -0.62 -33.91 15.78 -3.08 -0.05 -33.96 16
18 N -0.57 -28.68 5.29 -306.98 -1.62 -30.31 16
19 C -0.33 -18.67 9.68 84.04 0.81 -17.86 16
20 H 0.08 4.67 7.16 -2.91 -0.02 4.65 16
21 C -0.01 -0.60 5.50 84.93 0.47 -0.13 16
22 N -0.92 -48.88 13.05 21.66 0.28 -48.59 16
23 Si 0.99 42.46 29.55 68.60 2.03 44.49 16
24 H -0.27 -11.18 7.11 99.48 0.71 -10.48 16
25 H -0.27 -11.03 7.11 99.48 0.71 -10.32 16
26 H -0.27 -11.87 7.11 99.48 0.71 -11.16 16
27 C -0.05 -1.35 5.91 -19.61 -0.12 -1.47 16
28 C -0.12 -2.98 9.62 71.24 0.69 -2.29 16
29 C -0.14 -2.84 9.34 22.23 0.21 -2.63 16
30 H 0.08 0.84 8.14 -2.39 -0.02 0.82 16
31 H 0.08 0.75 8.08 -2.39 -0.02 0.73 16
32 H 0.08 0.69 8.08 -2.39 -0.02 0.67 16
33 H 0.15 1.79 8.06 -2.91 -0.02 1.77 16
34 H 0.09 1.25 8.14 -2.39 -0.02 1.24 16
35 H 0.09 1.17 8.09 -2.39 -0.02 1.15 16
36 H 0.05 1.07 7.08 -2.39 -0.02 1.05 16
37 H 0.40 9.06 7.36 -92.71 -0.68 8.37 16
38 H 0.09 1.76 8.14 -2.39 -0.02 1.74 16
39 H 0.06 1.65 8.14 -2.39 -0.02 1.63 16
40 H 0.06 1.21 7.45 -2.39 -0.02 1.19 16
41 H 0.08 1.19 8.14 -2.38 -0.02 1.17 16
42 H 0.05 1.20 8.14 -2.39 -0.02 1.18 16
43 H 0.34 10.87 6.41 -89.69 -0.58 10.29 16
44 H 0.07 1.92 8.06 -2.39 -0.02 1.90 16
45 H 0.11 3.09 7.44 -2.39 -0.02 3.07 16
46 H 0.40 18.81 7.90 -92.71 -0.73 18.08 16
47 H 0.28 13.82 8.31 -92.71 -0.77 13.05 16
48 H 0.08 1.82 8.14 -2.39 -0.02 1.80 16
49 H 0.08 1.86 8.09 -2.39 -0.02 1.84 16
50 H 0.05 1.46 7.07 -2.39 -0.02 1.44 16
51 H 0.14 2.37 8.06 -2.91 -0.02 2.35 16
Total: -1.00 -72.88 422.43 0.43 -72.45
By element:
Atomic # 1 Polarization: 51.49 SS G_CDS: -1.03 Total: 50.46 kcal
Atomic # 6 Polarization: 1.56 SS G_CDS: 6.14 Total: 7.70 kcal
Atomic # 7 Polarization: -114.78 SS G_CDS: -6.60 Total: -121.37 kcal
Atomic # 8 Polarization: -53.61 SS G_CDS: -0.12 Total: -53.72 kcal
Atomic # 14 Polarization: 42.46 SS G_CDS: 2.03 Total: 44.49 kcal
Total: -72.88 0.43 -72.45 kcal
The number of atoms in the molecule is 51
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001714300528.mol2 51
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -15.060 kcal
(2) G-P(sol) polarization free energy of solvation -72.878 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.938 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.428 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.450 kcal
(6) G-S(sol) free energy of system = (1) + (5) -87.511 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.50 seconds