Wall clock time and date at job start Wed Apr 1 2020 04:18:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.38354 * 119.85809 * 2 1 4 4 C 1.37952 * 120.15040 * 179.97438 * 3 2 1 5 5 C 1.50699 * 120.07789 * 180.02562 * 4 3 2 6 6 C 1.39582 * 119.84955 * 0.02562 * 4 3 2 7 7 C 1.47850 * 120.14154 * 180.02562 * 6 4 3 8 8 O 1.21553 * 120.00185 * 90.00011 * 7 6 4 9 9 N 1.34777 * 119.99831 * 269.71966 * 7 6 4 10 10 C 1.46499 * 120.00199 * 180.27510 * 9 7 6 11 11 C 1.52997 * 109.47551 * 180.02562 * 10 9 7 12 12 H 1.08994 * 109.47218 * 64.99529 * 11 10 9 13 13 C 1.52989 * 109.47435 * 185.00577 * 11 10 9 14 14 N 1.46911 * 109.46704 * 305.00213 * 11 10 9 15 15 C 1.46900 * 110.99634 * 154.99967 * 14 11 10 16 16 C 1.50700 * 109.47050 * 179.97438 * 15 14 11 17 17 O 1.21298 * 119.99682 * 0.02562 * 16 15 14 18 18 N 1.34771 * 120.00362 * 180.02562 * 16 15 14 19 19 C 1.37098 * 120.00384 * 180.02562 * 18 16 15 20 20 H 1.08006 * 119.99658 * 359.97438 * 19 18 16 21 21 C 1.38951 * 120.00420 * 180.02562 * 19 18 16 22 22 N 1.31411 * 119.99551 * 359.97438 * 21 19 18 23 23 Si 1.86793 * 119.99992 * 179.97438 * 21 19 18 24 24 H 1.48504 * 109.47333 * 89.99891 * 23 21 19 25 25 H 1.48502 * 109.46989 * 209.99680 * 23 21 19 26 26 H 1.48501 * 109.47356 * 329.99604 * 23 21 19 27 27 C 1.39566 * 119.71190 * 0.27375 * 6 4 3 28 28 C 1.50705 * 120.07209 * 179.72430 * 27 6 4 29 29 C 1.37955 * 119.85413 * 359.40807 * 27 6 4 30 30 H 1.09000 * 109.46632 * 90.00687 * 1 2 3 31 31 H 1.08995 * 109.47119 * 210.00431 * 1 2 3 32 32 H 1.09001 * 109.46743 * 330.00393 * 1 2 3 33 33 H 1.07997 * 119.92617 * 359.97438 * 3 2 1 34 34 H 1.08999 * 109.47374 * 269.97836 * 5 4 3 35 35 H 1.09004 * 109.46989 * 29.97889 * 5 4 3 36 36 H 1.09001 * 109.47310 * 149.97510 * 5 4 3 37 37 H 0.97001 * 119.99727 * 0.28406 * 9 7 6 38 38 H 1.08998 * 109.47134 * 300.00670 * 10 9 7 39 39 H 1.09002 * 109.46857 * 59.99862 * 10 9 7 40 40 H 1.09001 * 109.47374 * 180.02562 * 13 11 10 41 41 H 1.09006 * 109.46977 * 299.99839 * 13 11 10 42 42 H 1.09002 * 109.47666 * 59.99555 * 13 11 10 43 43 H 1.00900 * 111.00143 * 31.04632 * 14 11 10 44 44 H 1.09001 * 109.47243 * 299.99546 * 15 14 11 45 45 H 1.08994 * 109.47412 * 60.00242 * 15 14 11 46 46 H 0.96996 * 120.00120 * 359.97438 * 18 16 15 47 47 H 0.96998 * 119.99646 * 180.02562 * 22 21 19 48 48 H 1.09001 * 109.46898 * 90.00675 * 28 27 6 49 49 H 1.08999 * 109.46910 * 210.00361 * 28 27 6 50 50 H 1.08991 * 109.47449 * 330.00032 * 28 27 6 51 51 H 1.08001 * 119.93377 * 180.33744 * 29 27 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1958 1.1999 0.0000 4 6 3.5753 1.2069 0.0005 5 6 4.3240 2.5148 0.0011 6 6 4.2762 -0.0002 0.0005 7 6 5.7548 -0.0001 0.0017 8 8 6.3617 -0.0006 1.0548 9 7 6.4295 -0.0053 -1.1650 10 6 7.8945 -0.0114 -1.1640 11 6 8.4056 -0.0158 -2.6060 12 1 8.1214 0.9159 -3.0951 13 6 9.9298 -0.1480 -2.6065 14 7 7.8156 -1.1492 -3.3311 15 6 7.7750 -0.8860 -4.7758 16 6 7.1655 -2.0680 -5.4847 17 8 6.8005 -3.0343 -4.8489 18 7 7.0261 -2.0514 -6.8251 19 6 6.4712 -3.1265 -7.4700 20 1 6.1461 -3.9869 -6.9038 21 6 6.3279 -3.1096 -8.8520 22 7 6.7238 -2.0629 -9.5408 23 14 5.5725 -4.5747 -9.7306 24 1 4.1018 -4.3912 -9.8247 25 1 6.1462 -4.6827 -11.0960 26 1 5.8688 -5.8150 -8.9696 27 6 3.5753 -1.2070 -0.0058 28 6 4.3239 -2.5150 -0.0121 29 6 2.1958 -1.2001 0.0003 30 1 -0.3632 -0.0001 -1.0277 31 1 -0.3633 -0.8899 0.5139 32 1 -0.3633 0.8900 0.5138 33 1 1.6523 2.1331 -0.0004 34 1 4.5052 2.8302 -1.0264 35 1 3.7316 3.2723 0.5146 36 1 5.2765 2.3881 0.5157 37 1 5.9451 -0.0049 -2.0054 38 1 8.2611 0.8780 -0.6516 39 1 8.2537 -0.9019 -0.6480 40 1 10.2939 -0.1507 -3.6339 41 1 10.3676 0.6928 -2.0685 42 1 10.2139 -1.0798 -2.1175 43 1 6.8959 -1.3657 -2.9770 44 1 7.1729 0.0024 -4.9665 45 1 8.7879 -0.7246 -5.1444 46 1 7.3176 -1.2785 -7.3335 47 1 6.6235 -2.0509 -10.5055 48 1 4.5039 -2.8356 1.0140 49 1 3.7321 -3.2698 -0.5300 50 1 5.2769 -2.3858 -0.5249 51 1 1.6522 -2.1333 0.0010 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001714300528.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:18:35 Heat of formation + Delta-G solvation = -87.510673 kcal Electronic energy + Delta-G solvation = -30468.891800 eV Core-core repulsion = 26366.250272 eV Total energy + Delta-G solvation = -4102.641528 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.50 seconds Orbital eigenvalues (eV) -41.61848 -40.28127 -39.74494 -38.17663 -35.98116 -35.06547 -34.65099 -34.42734 -33.27371 -32.05548 -28.99123 -28.85372 -28.12832 -27.74336 -26.83047 -25.64611 -22.95808 -21.85099 -21.69816 -21.20218 -20.97724 -19.92557 -18.92134 -17.81157 -17.47499 -17.27691 -16.92330 -16.69964 -16.31598 -15.96451 -15.73521 -15.40261 -15.24056 -15.11595 -15.04028 -14.50598 -14.29461 -14.20016 -14.04525 -14.01023 -13.74137 -13.67174 -13.59078 -13.48900 -13.31704 -13.26613 -12.94990 -12.82624 -12.68271 -12.59771 -12.43513 -12.40863 -12.22114 -12.12559 -11.98506 -11.90098 -11.50319 -11.08505 -10.34524 -10.27126 -10.01113 -9.61409 -9.59600 -9.39563 -8.46669 -5.95033 0.07777 0.32659 1.37767 1.41107 1.42058 1.54423 2.03313 2.06091 2.28906 2.59209 2.85733 3.20928 3.46531 3.56620 3.67561 3.72435 3.76162 3.86053 4.14770 4.23821 4.27982 4.33704 4.37148 4.42525 4.44318 4.54495 4.58258 4.59619 4.60253 4.61493 4.66624 4.75467 4.78402 4.84906 4.91361 4.92514 5.02333 5.03702 5.20859 5.22041 5.24880 5.39781 5.41197 5.43557 5.44363 5.58084 5.87047 5.95194 6.08166 6.26952 6.31422 6.60298 6.99965 7.13069 7.56595 8.11972 8.70671 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.008967 B = 0.002730 C = 0.002288 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3121.673009 B =10252.593433 C =12233.594594 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.064 4.064 3 C -0.133 4.133 4 C -0.053 4.053 5 C -0.118 4.118 6 C -0.163 4.163 7 C 0.578 3.422 8 O -0.572 6.572 9 N -0.716 5.716 10 C 0.121 3.879 11 C 0.079 3.921 12 H 0.070 0.930 13 C -0.136 4.136 14 N -0.679 5.679 15 C 0.064 3.936 16 C 0.437 3.563 17 O -0.622 6.622 18 N -0.572 5.572 19 C -0.333 4.333 20 H 0.078 0.922 21 C -0.011 4.011 22 N -0.919 5.919 23 Si 0.990 3.010 24 H -0.270 1.270 25 H -0.271 1.271 26 H -0.274 1.274 27 C -0.055 4.055 28 C -0.121 4.121 29 C -0.138 4.138 30 H 0.081 0.919 31 H 0.076 0.924 32 H 0.082 0.918 33 H 0.152 0.848 34 H 0.086 0.914 35 H 0.093 0.907 36 H 0.051 0.949 37 H 0.405 0.595 38 H 0.089 0.911 39 H 0.063 0.937 40 H 0.059 0.941 41 H 0.082 0.918 42 H 0.053 0.947 43 H 0.341 0.659 44 H 0.071 0.929 45 H 0.106 0.894 46 H 0.397 0.603 47 H 0.277 0.723 48 H 0.077 0.923 49 H 0.085 0.915 50 H 0.052 0.948 51 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.204 12.088 16.728 21.860 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.064 4.064 3 C -0.151 4.151 4 C -0.053 4.053 5 C -0.175 4.175 6 C -0.166 4.166 7 C 0.365 3.635 8 O -0.452 6.452 9 N -0.367 5.367 10 C -0.002 4.002 11 C -0.031 4.031 12 H 0.087 0.913 13 C -0.195 4.195 14 N -0.314 5.314 15 C -0.068 4.068 16 C 0.224 3.776 17 O -0.509 6.509 18 N -0.209 5.209 19 C -0.463 4.463 20 H 0.096 0.904 21 C -0.211 4.211 22 N -0.560 5.560 23 Si 0.814 3.186 24 H -0.195 1.195 25 H -0.196 1.196 26 H -0.199 1.199 27 C -0.055 4.055 28 C -0.178 4.178 29 C -0.156 4.156 30 H 0.099 0.901 31 H 0.095 0.905 32 H 0.101 0.899 33 H 0.170 0.830 34 H 0.104 0.896 35 H 0.111 0.889 36 H 0.070 0.930 37 H 0.241 0.759 38 H 0.107 0.893 39 H 0.082 0.918 40 H 0.079 0.921 41 H 0.101 0.899 42 H 0.073 0.927 43 H 0.161 0.839 44 H 0.089 0.911 45 H 0.124 0.876 46 H 0.230 0.770 47 H 0.087 0.913 48 H 0.095 0.905 49 H 0.104 0.896 50 H 0.071 0.929 51 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -6.385 11.144 17.651 21.829 hybrid contribution -0.800 -0.031 -1.284 1.513 sum -7.185 11.113 16.367 21.047 Atomic orbital electron populations 1.20899 0.88690 1.04131 1.03422 1.20440 0.97884 0.92538 0.95580 1.21132 0.92522 0.99019 1.02408 1.20109 0.94543 0.93976 0.96717 1.20896 0.99597 0.93525 1.03454 1.19677 0.91961 0.94820 1.10106 1.18388 0.87486 0.74220 0.83382 1.90760 1.70606 1.51346 1.32443 1.46099 1.07893 1.74264 1.08478 1.21641 0.78612 1.03048 0.96928 1.21866 0.97076 0.92408 0.91734 0.91262 1.21744 0.92398 1.02618 1.02697 1.60142 1.29551 1.40026 1.01723 1.21622 1.02195 0.94203 0.88825 1.20869 0.83826 0.90309 0.82554 1.90503 1.55869 1.37979 1.66536 1.41913 1.54921 1.18280 1.05799 1.19647 1.38291 0.97667 0.90653 0.90412 1.25999 0.97646 1.00868 0.96608 1.69665 1.47462 1.30409 1.08504 0.84965 0.78461 0.77733 0.77432 1.19540 1.19602 1.19887 1.20034 0.94607 0.93893 0.97002 1.20878 0.99746 0.94332 1.02830 1.21108 0.92506 0.99244 1.02749 0.90074 0.90496 0.89885 0.82986 0.89559 0.88864 0.92998 0.75933 0.89304 0.91813 0.92149 0.89920 0.92746 0.83854 0.91133 0.87580 0.76955 0.91307 0.90461 0.89630 0.92925 0.83958 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.29 10.01 71.24 0.71 -0.57 16 2 C -0.06 -1.13 5.89 -19.80 -0.12 -1.25 16 3 C -0.13 -2.34 9.34 22.23 0.21 -2.13 16 4 C -0.05 -1.12 5.91 -19.61 -0.12 -1.23 16 5 C -0.12 -2.01 9.62 71.24 0.69 -1.32 16 6 C -0.16 -4.15 5.63 -20.09 -0.11 -4.27 16 7 C 0.58 16.05 4.19 86.79 0.36 16.41 16 8 O -0.57 -19.70 17.10 -3.88 -0.07 -19.76 16 9 N -0.72 -16.96 4.98 -465.97 -2.32 -19.28 16 10 C 0.12 2.69 5.31 86.38 0.46 3.15 16 11 C 0.08 1.68 2.81 44.91 0.13 1.81 16 12 H 0.07 1.26 7.80 -2.39 -0.02 1.24 16 13 C -0.14 -2.66 9.41 71.98 0.68 -1.98 16 14 N -0.68 -20.26 5.93 -495.59 -2.94 -23.19 16 15 C 0.06 2.05 5.97 85.56 0.51 2.56 16 16 C 0.44 20.21 7.82 87.66 0.69 20.90 16 17 O -0.62 -33.91 15.78 -3.08 -0.05 -33.96 16 18 N -0.57 -28.68 5.29 -306.98 -1.62 -30.31 16 19 C -0.33 -18.67 9.68 84.04 0.81 -17.86 16 20 H 0.08 4.67 7.16 -2.91 -0.02 4.65 16 21 C -0.01 -0.60 5.50 84.93 0.47 -0.13 16 22 N -0.92 -48.88 13.05 21.66 0.28 -48.59 16 23 Si 0.99 42.46 29.55 68.60 2.03 44.49 16 24 H -0.27 -11.18 7.11 99.48 0.71 -10.48 16 25 H -0.27 -11.03 7.11 99.48 0.71 -10.32 16 26 H -0.27 -11.87 7.11 99.48 0.71 -11.16 16 27 C -0.05 -1.35 5.91 -19.61 -0.12 -1.47 16 28 C -0.12 -2.98 9.62 71.24 0.69 -2.29 16 29 C -0.14 -2.84 9.34 22.23 0.21 -2.63 16 30 H 0.08 0.84 8.14 -2.39 -0.02 0.82 16 31 H 0.08 0.75 8.08 -2.39 -0.02 0.73 16 32 H 0.08 0.69 8.08 -2.39 -0.02 0.67 16 33 H 0.15 1.79 8.06 -2.91 -0.02 1.77 16 34 H 0.09 1.25 8.14 -2.39 -0.02 1.24 16 35 H 0.09 1.17 8.09 -2.39 -0.02 1.15 16 36 H 0.05 1.07 7.08 -2.39 -0.02 1.05 16 37 H 0.40 9.06 7.36 -92.71 -0.68 8.37 16 38 H 0.09 1.76 8.14 -2.39 -0.02 1.74 16 39 H 0.06 1.65 8.14 -2.39 -0.02 1.63 16 40 H 0.06 1.21 7.45 -2.39 -0.02 1.19 16 41 H 0.08 1.19 8.14 -2.38 -0.02 1.17 16 42 H 0.05 1.20 8.14 -2.39 -0.02 1.18 16 43 H 0.34 10.87 6.41 -89.69 -0.58 10.29 16 44 H 0.07 1.92 8.06 -2.39 -0.02 1.90 16 45 H 0.11 3.09 7.44 -2.39 -0.02 3.07 16 46 H 0.40 18.81 7.90 -92.71 -0.73 18.08 16 47 H 0.28 13.82 8.31 -92.71 -0.77 13.05 16 48 H 0.08 1.82 8.14 -2.39 -0.02 1.80 16 49 H 0.08 1.86 8.09 -2.39 -0.02 1.84 16 50 H 0.05 1.46 7.07 -2.39 -0.02 1.44 16 51 H 0.14 2.37 8.06 -2.91 -0.02 2.35 16 Total: -1.00 -72.88 422.43 0.43 -72.45 By element: Atomic # 1 Polarization: 51.49 SS G_CDS: -1.03 Total: 50.46 kcal Atomic # 6 Polarization: 1.56 SS G_CDS: 6.14 Total: 7.70 kcal Atomic # 7 Polarization: -114.78 SS G_CDS: -6.60 Total: -121.37 kcal Atomic # 8 Polarization: -53.61 SS G_CDS: -0.12 Total: -53.72 kcal Atomic # 14 Polarization: 42.46 SS G_CDS: 2.03 Total: 44.49 kcal Total: -72.88 0.43 -72.45 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001714300528.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.060 kcal (2) G-P(sol) polarization free energy of solvation -72.878 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.938 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.428 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.450 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.511 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.50 seconds